Wall clock time and date at job start Sun Mar 29 2020 22:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.89098 * 31.11259 * 10 9 7 12 12 C 1.55159 * 111.00840 * 154.99548 * 10 9 7 13 13 C 1.54322 * 102.94499 * 153.57161 * 12 10 9 14 14 N 1.47022 * 107.27131 * 337.80902 * 13 12 10 15 15 C 1.34772 * 125.64795 * 178.95610 * 14 13 12 16 16 O 1.21615 * 120.00281 * 179.97438 * 15 14 13 17 17 C 1.47102 * 120.00085 * 359.97438 * 15 14 13 18 18 C 1.32996 * 120.00366 * 179.97438 * 17 15 14 19 19 C 1.51406 * 136.31411 * 359.62596 * 18 17 15 20 20 C 1.53377 * 87.51792 * 206.05984 * 19 18 17 21 21 C 1.51398 * 136.31776 * 180.02562 * 18 17 15 22 22 C 1.47426 * 108.70354 * 358.94437 * 14 13 12 23 23 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 24 24 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 25 25 H 1.08998 * 110.72180 * 271.94451 * 12 10 9 26 26 H 1.09001 * 110.71684 * 35.03174 * 12 10 9 27 27 H 1.08997 * 109.88046 * 97.22707 * 13 12 10 28 28 H 1.08994 * 109.88425 * 218.23845 * 13 12 10 29 29 H 1.08003 * 119.99880 * 359.97438 * 17 15 14 30 30 H 1.09004 * 113.56054 * 320.64647 * 19 18 17 31 31 H 1.09003 * 113.55737 * 91.37539 * 19 18 17 32 32 H 1.09000 * 113.96305 * 220.29315 * 20 19 18 33 33 H 1.09002 * 113.70903 * 88.80992 * 20 19 18 34 34 H 1.08998 * 113.56519 * 268.62213 * 21 18 17 35 35 H 1.08999 * 113.56594 * 39.28426 * 21 18 17 36 36 H 1.09006 * 110.36031 * 265.28612 * 22 14 13 37 37 H 1.08995 * 110.37034 * 142.97033 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0069 -3.5577 0.5254 12 6 1.1988 -4.7951 0.6095 13 6 1.7705 -6.0599 -0.0650 14 7 2.4315 -5.6317 -1.3065 15 6 3.0735 -6.4395 -2.1735 16 8 3.5856 -5.9738 -3.1734 17 6 3.1548 -7.8845 -1.9103 18 6 3.7879 -8.6818 -2.7661 19 6 4.5239 -8.5148 -4.0786 20 6 4.1641 -9.9731 -4.3892 21 6 4.0880 -10.1623 -2.8663 22 6 2.2754 -4.1724 -1.4461 23 1 -0.4850 -0.8401 -0.0004 24 1 0.3556 -2.3880 -0.0016 25 1 1.3316 -4.8408 1.6904 26 1 0.1468 -4.6622 0.3570 27 1 2.4949 -6.5368 0.5952 28 1 0.9630 -6.7556 -0.2932 29 1 2.7003 -8.2980 -1.0221 30 1 4.0547 -7.7987 -4.7532 31 1 5.5942 -8.3460 -3.9595 32 1 4.9680 -10.5361 -4.8635 33 1 3.2059 -10.0898 -4.8956 34 1 5.0386 -10.4458 -2.4145 35 1 3.2619 -10.7971 -2.5458 36 1 1.4090 -3.9412 -2.0658 37 1 3.1767 -3.7336 -1.8739 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018704832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:35 Heat of formation + Delta-G solvation = 20.574231 kcal Electronic energy + Delta-G solvation = -17842.330781 eV Core-core repulsion = 15007.087026 eV Total energy + Delta-G solvation = -2835.243754 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.89565 -38.67684 -37.09608 -34.40367 -31.81400 -30.70899 -29.51265 -27.39638 -25.95569 -24.29241 -23.12059 -22.37488 -20.42970 -19.59538 -17.87056 -17.45366 -17.05069 -15.97452 -15.59714 -15.42762 -14.65374 -14.40598 -14.01871 -13.67829 -13.21662 -13.02284 -12.66882 -12.57955 -12.33322 -12.02187 -11.84880 -11.42872 -11.16965 -11.14430 -10.74002 -10.65523 -10.64199 -10.29728 -9.99977 -9.55394 -9.29480 -9.23195 -9.01564 -8.30764 -7.15070 -6.16586 -3.18607 1.33741 3.21004 3.45508 3.51295 3.54665 3.71789 4.17389 4.29701 4.55297 4.63433 4.86810 4.90023 4.95787 5.18141 5.26050 5.31100 5.41201 5.47778 5.50053 5.58883 5.65778 5.71322 5.84864 5.88599 5.98316 6.00893 6.10425 6.18923 6.30937 6.45977 6.51581 6.64833 6.81610 7.75864 7.81956 8.42937 8.69196 9.12985 9.99515 10.12451 11.31325 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.044438 B = 0.003983 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.941859 B = 7028.110556 C = 7444.070135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.041 4.041 3 Si 1.081 2.919 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.339 4.339 8 H 0.067 0.933 9 N -0.723 5.723 10 C 0.177 3.823 11 H 0.069 0.931 12 C -0.144 4.144 13 C 0.106 3.894 14 N -0.612 5.612 15 C 0.559 3.441 16 O -0.547 6.547 17 C -0.189 4.189 18 C -0.070 4.070 19 C -0.105 4.105 20 C -0.142 4.142 21 C -0.107 4.107 22 C 0.083 3.917 23 H 0.255 0.745 24 H 0.370 0.630 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.130 0.870 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.923 -20.602 -2.197 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.238 4.238 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.470 4.470 8 H 0.085 0.915 9 N -0.364 5.364 10 C 0.065 3.935 11 H 0.087 0.913 12 C -0.183 4.183 13 C -0.018 4.018 14 N -0.345 5.345 15 C 0.350 3.650 16 O -0.427 6.427 17 C -0.210 4.210 18 C -0.072 4.072 19 C -0.142 4.142 20 C -0.180 4.180 21 C -0.144 4.144 22 C -0.042 4.042 23 H 0.067 0.933 24 H 0.204 0.796 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.277 -18.663 -2.752 19.882 hybrid contribution -0.240 -1.779 0.097 1.798 sum 6.037 -20.442 -2.656 21.479 Atomic orbital electron populations 1.70899 1.06071 1.28481 1.53048 1.25827 0.97001 1.01112 0.99907 0.83240 0.74253 0.75441 0.75989 1.20977 1.22141 1.22097 1.20079 0.92165 0.85589 1.49178 0.91485 1.42308 1.04838 1.00428 1.88799 1.21250 0.95157 0.85541 0.91591 0.91320 1.22961 1.00659 0.94284 1.00348 1.21979 0.96324 0.97712 0.85738 1.48413 1.53994 1.09361 1.22763 1.18076 0.78274 0.86244 0.82421 1.90760 1.47526 1.76938 1.27490 1.21654 1.06561 0.92275 1.00533 1.23427 0.93150 0.96194 0.94434 1.22203 1.00535 0.96866 0.94611 1.22722 1.02375 0.97273 0.95608 1.22325 1.02508 0.92661 0.96896 1.23337 1.01744 0.77433 1.01670 0.93350 0.79620 0.90185 0.90702 0.91662 0.91856 0.85200 0.89525 0.88527 0.90499 0.89800 0.88251 0.90525 0.91797 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.80 13.70 55.49 0.76 -28.04 16 2 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 3 Si 1.08 25.86 29.92 -169.99 -5.09 20.77 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.34 -9.46 9.96 -15.06 -0.15 -9.61 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.77 5.24 -51.36 -0.27 -18.04 16 10 C 0.18 3.50 3.71 -65.79 -0.24 3.26 16 11 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 12 C -0.14 -2.18 6.60 -24.90 -0.16 -2.34 16 13 C 0.11 1.39 6.06 -3.06 -0.02 1.37 16 14 N -0.61 -10.22 3.33 -171.92 -0.57 -10.79 16 15 C 0.56 9.54 7.80 -12.67 -0.10 9.44 16 16 O -0.55 -11.20 15.41 5.26 0.08 -11.12 16 17 C -0.19 -2.44 9.54 -37.80 -0.36 -2.80 16 18 C -0.07 -0.81 6.93 -100.49 -0.70 -1.51 16 19 C -0.11 -1.18 6.99 -27.56 -0.19 -1.37 16 20 C -0.14 -1.15 8.17 -26.20 -0.21 -1.37 16 21 C -0.11 -0.85 7.95 -27.42 -0.22 -1.07 16 22 C 0.08 1.65 6.60 -2.53 -0.02 1.63 16 23 H 0.26 7.65 6.77 -40.82 -0.28 7.37 16 24 H 0.37 9.28 6.59 -40.82 -0.27 9.01 16 25 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.07 1.14 8.00 -51.93 -0.42 0.73 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.13 1.32 7.38 -52.48 -0.39 0.94 16 30 H 0.09 1.16 7.49 -51.93 -0.39 0.77 16 31 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.07 1.55 8.04 -51.93 -0.42 1.13 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -33.07 308.20 -8.50 -41.57 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.59 Total: 6.62 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -2.47 Total: -5.62 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.08 Total: -56.86 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.09 Total: 20.77 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.07 -8.50 -41.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018704832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.142 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds