Wall clock time and date at job start Sun Mar 29 2020 23:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00021 * 2 1 4 4 H 1.48493 * 109.47174 * 274.99123 * 3 2 1 5 5 H 1.48497 * 109.46989 * 34.99238 * 3 2 1 6 6 H 1.48503 * 109.47112 * 154.99009 * 3 2 1 7 7 C 1.37874 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00169 * 189.57144 * 7 2 1 9 9 C 1.50695 * 120.00353 * 9.57086 * 7 2 1 10 10 C 1.52999 * 109.47427 * 185.44343 * 9 7 2 11 11 C 1.52999 * 109.47492 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47359 * 59.99740 * 11 10 9 13 13 N 1.46900 * 109.46441 * 60.00300 * 12 11 10 14 14 C 1.46906 * 110.99736 * 155.00180 * 13 12 11 15 15 C 1.50702 * 109.47009 * 179.97438 * 14 13 12 16 16 C 1.34326 * 126.16552 * 95.01780 * 15 14 13 17 17 O 1.34755 * 107.11485 * 179.74194 * 16 15 14 18 18 C 1.33970 * 107.75218 * 0.35697 * 17 16 15 19 19 N 1.30255 * 108.75949 * 359.63769 * 18 17 16 20 20 C 1.53003 * 109.47190 * 300.00860 * 12 11 10 21 21 C 1.52996 * 109.47367 * 59.99526 * 20 12 11 22 22 H 0.96991 * 119.99686 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47430 * 305.44677 * 9 7 2 24 24 H 1.09006 * 109.46941 * 60.00543 * 10 9 7 25 25 H 1.09004 * 109.47448 * 300.00393 * 10 9 7 26 26 H 1.09004 * 109.46871 * 300.00472 * 11 10 9 27 27 H 1.08993 * 109.47949 * 180.02562 * 11 10 9 28 28 H 1.08994 * 109.47256 * 180.02562 * 12 11 10 29 29 H 1.00899 * 111.00497 * 31.05022 * 13 12 11 30 30 H 1.08995 * 109.47134 * 60.00430 * 14 13 12 31 31 H 1.08997 * 109.47048 * 300.00077 * 14 13 12 32 32 H 1.08005 * 126.44605 * 359.97438 * 16 15 14 33 33 H 1.08000 * 125.61620 * 179.89567 * 18 17 16 34 34 H 1.09000 * 109.46968 * 179.97438 * 20 12 11 35 35 H 1.08997 * 109.46749 * 299.99161 * 20 12 11 36 36 H 1.09000 * 109.46945 * 180.02562 * 21 20 12 37 37 H 1.09004 * 109.47182 * 59.99830 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0733 -1.2007 0.1550 9 6 1.2668 -2.4899 -0.2181 10 6 2.2324 -3.6630 -0.0377 11 6 1.4836 -4.9787 -0.2593 12 6 0.9077 -5.0055 -1.6765 13 7 2.0010 -4.8942 -2.6513 14 6 1.6198 -5.4880 -3.9398 15 6 2.7634 -5.3547 -4.9122 16 6 3.7011 -6.2827 -5.1651 17 8 4.5280 -5.7674 -6.0961 18 6 4.0924 -4.5357 -6.3926 19 7 3.0286 -4.2857 -5.6837 20 6 -0.0579 -3.8324 -1.8569 21 6 0.6910 -2.5167 -1.6354 22 1 -0.4849 0.8400 0.0004 23 1 0.4559 -2.5723 0.5055 24 1 2.6429 -3.6438 0.9719 25 1 3.0434 -3.5807 -0.7614 26 1 0.6723 -5.0613 0.4641 27 1 2.1712 -5.8144 -0.1303 28 1 0.3738 -5.9426 -1.8341 29 1 2.8467 -5.3141 -2.2958 30 1 0.7458 -4.9698 -4.3343 31 1 1.3838 -6.5426 -3.7982 32 1 3.7759 -7.2597 -4.7109 33 1 4.5459 -3.8628 -7.1053 34 1 -0.4678 -3.8512 -2.8667 35 1 -0.8690 -3.9150 -1.1336 36 1 0.0030 -1.6811 -1.7636 37 1 1.5023 -2.4342 -2.3588 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:05 Heat of formation + Delta-G solvation = 10.206708 kcal Electronic energy + Delta-G solvation = -18476.584435 eV Core-core repulsion = 15640.891111 eV Total energy + Delta-G solvation = -2835.693324 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.30231 -38.33368 -35.45153 -33.94969 -32.22973 -30.36420 -29.66572 -28.47295 -25.34508 -24.11717 -22.75280 -21.58242 -20.98651 -20.47688 -18.12440 -17.57756 -16.51587 -16.16874 -15.46657 -15.29035 -14.70605 -14.46637 -14.06740 -13.87611 -13.15180 -12.64549 -12.51993 -12.00243 -11.94425 -11.44105 -11.30348 -11.08289 -10.98355 -10.69574 -10.56546 -10.42860 -10.15653 -10.01991 -9.69777 -9.20056 -8.96205 -8.66886 -8.49467 -8.11991 -7.92110 -5.85508 -3.84803 1.44875 2.69982 2.85367 3.40922 3.47623 3.50695 4.13180 4.54909 4.58913 4.88278 4.93038 5.38541 5.45102 5.48337 5.54302 5.65238 5.74195 5.81657 5.97950 6.20884 6.27284 6.36495 6.46266 6.54721 6.59875 6.85386 6.91909 7.09201 7.33211 7.42630 7.61675 7.68862 7.74444 7.78878 7.94974 8.24882 8.27732 8.67108 9.19324 9.77070 11.23749 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.005806 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.248935 B = 4821.038428 C = 5526.845433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.882 3.118 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.051 0.949 9 C 0.050 3.950 10 C -0.102 4.102 11 C -0.118 4.118 12 C 0.096 3.904 13 N -0.663 5.663 14 C 0.138 3.862 15 C 0.003 3.997 16 C -0.080 4.080 17 O -0.210 6.210 18 C 0.164 3.836 19 N -0.464 5.464 20 C -0.106 4.106 21 C -0.091 4.091 22 H 0.257 0.743 23 H 0.025 0.975 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.027 0.973 29 H 0.335 0.665 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.211 0.789 33 H 0.248 0.752 34 H 0.039 0.961 35 H 0.051 0.949 36 H 0.061 0.939 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.011 -14.036 -9.669 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.710 3.290 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.546 4.546 8 H 0.069 0.931 9 C 0.032 3.968 10 C -0.139 4.139 11 C -0.156 4.156 12 C -0.013 4.013 13 N -0.296 5.296 14 C 0.009 3.991 15 C -0.117 4.117 16 C -0.151 4.151 17 O -0.096 6.096 18 C -0.063 4.063 19 N -0.193 5.193 20 C -0.144 4.144 21 C -0.129 4.129 22 H 0.067 0.933 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.153 0.847 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.227 0.773 33 H 0.263 0.737 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.367 -12.728 -9.887 16.698 hybrid contribution 0.895 -0.524 0.145 1.047 sum 5.262 -13.252 -9.742 17.269 Atomic orbital electron populations 1.69976 1.05848 1.26084 1.51038 1.24930 0.94696 0.98774 0.95400 0.86743 0.80062 0.84276 0.77887 1.20818 1.21528 1.20066 1.21205 0.93896 0.91312 1.48161 0.93075 1.18620 0.93691 0.91313 0.93208 1.21534 0.99145 0.93965 0.99294 1.21752 0.99724 0.98917 0.95202 1.21521 0.91745 0.96770 0.91253 1.60377 1.06114 1.60906 1.02155 1.20206 0.93808 0.96954 0.88163 1.21739 0.99744 0.90089 1.00140 1.24761 0.92903 1.01724 0.95716 1.84467 1.48671 1.29459 1.47050 1.28164 0.93116 0.83980 1.00995 1.70411 1.14366 1.27061 1.07447 1.21602 0.96761 0.96933 0.99111 1.21362 0.98910 0.93362 0.99293 0.93334 0.95726 0.94165 0.92666 0.91965 0.93985 0.95483 0.84657 0.89269 0.94232 0.77267 0.73662 0.94197 0.93013 0.92029 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 12.16 55.43 0.67 -25.88 16 2 C 0.06 1.81 5.20 -17.82 -0.09 1.72 16 3 Si 0.88 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.49 8.48 -34.44 -0.29 -14.78 16 8 H 0.05 1.46 7.77 -52.48 -0.41 1.05 16 9 C 0.05 1.28 1.97 -91.77 -0.18 1.10 16 10 C -0.10 -2.15 4.99 -26.73 -0.13 -2.28 16 11 C -0.12 -2.01 5.30 -26.73 -0.14 -2.16 16 12 C 0.10 1.58 2.82 -67.71 -0.19 1.39 16 13 N -0.66 -10.47 4.81 -107.99 -0.52 -10.99 16 14 C 0.14 1.88 6.02 -4.97 -0.03 1.85 16 15 C 0.00 0.04 6.62 -82.81 -0.55 -0.51 16 16 C -0.08 -0.86 12.08 29.35 0.35 -0.50 16 17 O -0.21 -2.35 10.78 5.35 0.06 -2.30 16 18 C 0.16 1.83 13.23 52.09 0.69 2.52 16 19 N -0.46 -7.01 11.29 -11.18 -0.13 -7.14 16 20 C -0.11 -2.08 5.53 -26.73 -0.15 -2.23 16 21 C -0.09 -2.21 4.88 -26.73 -0.13 -2.34 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.02 0.69 8.09 -51.93 -0.42 0.27 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 1.18 7.48 -51.93 -0.39 0.80 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 28 H 0.03 0.40 7.80 -51.93 -0.41 -0.01 16 29 H 0.34 4.89 8.18 -39.29 -0.32 4.57 16 30 H 0.09 1.35 7.43 -51.93 -0.39 0.96 16 31 H 0.04 0.44 8.06 -51.93 -0.42 0.02 16 32 H 0.21 1.45 8.06 -52.48 -0.42 1.02 16 33 H 0.25 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.04 0.74 7.45 -51.93 -0.39 0.36 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.69 6.91 -51.93 -0.36 1.33 16 37 H 0.05 1.34 7.60 -51.93 -0.39 0.95 16 LS Contribution 300.78 15.07 4.53 4.53 Total: -1.00 -32.67 300.78 -6.81 -39.48 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.56 Total: 1.36 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -0.84 Total: -16.23 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.03 Total: -44.01 kcal Atomic # 8 Polarization: -2.35 SS G_CDS: 0.06 Total: -2.30 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.67 -6.81 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.684 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds