Wall clock time and date at job start Sun Mar 29 2020 23:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34489 * 126.83466 * 2 1 4 4 N 1.36446 * 108.85872 * 180.26539 * 3 2 1 5 5 H 0.96998 * 124.85109 * 179.72900 * 4 3 2 6 6 C 1.34662 * 110.29449 * 359.71014 * 4 3 2 7 7 C 1.50701 * 125.79663 * 180.02562 * 6 4 3 8 8 C 1.36763 * 108.39941 * 359.97438 * 6 4 3 9 9 C 1.47264 * 126.94337 * 179.97438 * 8 6 4 10 10 O 1.21633 * 119.99665 * 90.00653 * 9 8 6 11 11 N 1.34777 * 120.00360 * 270.01091 * 9 8 6 12 12 C 1.46498 * 119.99828 * 180.27622 * 11 9 8 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 C 1.53003 * 109.47301 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47008 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00362 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99653 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00420 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47172 * 90.00092 * 19 17 15 21 21 H 1.48503 * 109.46928 * 209.99961 * 19 17 15 22 22 H 1.48499 * 109.46876 * 329.99803 * 19 17 15 23 23 H 1.08991 * 109.47282 * 270.20308 * 1 2 3 24 24 H 1.08998 * 109.47137 * 30.20865 * 1 2 3 25 25 H 1.09002 * 109.46828 * 150.20533 * 1 2 3 26 26 H 1.08002 * 125.56989 * 359.97207 * 3 2 1 27 27 H 1.09002 * 109.46759 * 269.96832 * 7 6 4 28 28 H 1.08997 * 109.47370 * 29.97034 * 7 6 4 29 29 H 1.09002 * 109.46730 * 149.97507 * 7 6 4 30 30 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 31 31 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 32 32 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 33 33 H 1.09004 * 109.47066 * 299.99732 * 13 12 11 34 34 H 1.09000 * 109.47665 * 59.99541 * 13 12 11 35 35 H 1.08990 * 109.47021 * 299.99845 * 14 13 12 36 36 H 1.09002 * 109.46620 * 60.00037 * 14 13 12 37 37 H 0.97000 * 120.00497 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 -0.0060 5 1 4.3840 1.2414 -0.0110 6 6 3.6656 -0.6902 -0.0035 7 6 4.9226 -1.5215 -0.0079 8 6 2.3865 -1.1740 0.0048 9 6 1.9750 -2.5880 0.0095 10 8 1.8112 -3.1701 1.0648 11 7 1.7801 -3.2371 -1.1555 12 6 1.3649 -4.6420 -1.1506 13 6 1.2088 -5.1326 -2.5913 14 6 0.7758 -6.6001 -2.5863 15 6 0.6214 -7.0831 -4.0055 16 1 0.8134 -6.4109 -4.8286 17 6 0.2361 -8.3836 -4.2529 18 7 0.0029 -9.2025 -3.2505 19 14 0.0455 -8.9827 -6.0120 20 1 1.3378 -9.5372 -6.4889 21 1 -0.9963 -10.0397 -6.0648 22 1 -0.3568 -7.8474 -6.8806 23 1 -0.3633 0.0036 1.0276 24 1 -0.3633 0.8881 -0.5171 25 1 -0.3633 -0.8919 -0.5107 26 1 1.9868 2.1059 -0.0004 27 1 5.2204 -1.7244 -1.0367 28 1 5.7192 -0.9784 0.5005 29 1 4.7373 -2.4630 0.5091 30 1 1.9104 -2.7727 -1.9971 31 1 2.1196 -5.2421 -0.6422 32 1 0.4127 -4.7377 -0.6290 33 1 0.4541 -4.5325 -3.0998 34 1 2.1610 -5.0370 -3.1130 35 1 1.5307 -7.1999 -2.0781 36 1 -0.1764 -6.6961 -2.0646 37 1 -0.2678 -10.1175 -3.4246 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193360140.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:18 Heat of formation + Delta-G solvation = -45.260821 kcal Electronic energy + Delta-G solvation = -17538.799928 eV Core-core repulsion = 14700.701351 eV Total energy + Delta-G solvation = -2838.098577 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.17305 -40.17750 -36.91486 -35.15545 -33.75498 -33.16099 -32.20911 -29.27723 -28.27472 -26.47775 -25.20483 -23.13385 -22.30152 -20.39824 -20.21234 -18.54888 -18.39653 -17.33826 -16.82145 -16.56239 -16.41384 -15.57498 -15.35495 -14.78891 -14.27473 -14.20881 -14.09492 -14.00649 -13.76038 -13.54539 -13.42952 -13.16002 -13.05767 -12.74233 -12.55261 -12.37905 -12.15304 -11.67647 -11.62939 -11.25648 -10.94347 -10.54748 -10.09816 -9.51357 -8.99191 -8.18606 -6.30387 1.17540 1.42275 1.43986 1.55036 1.59920 1.63534 2.22888 2.42621 2.60169 3.14961 3.85509 4.00128 4.18701 4.19720 4.24462 4.36451 4.53108 4.54833 4.67238 4.68366 4.87509 4.93096 4.99134 4.99411 5.07783 5.15906 5.17153 5.32737 5.44929 5.53179 5.70714 5.84430 5.85156 6.05247 6.22854 6.60640 6.75539 6.86864 7.27826 7.39189 8.93622 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.035537 B = 0.003637 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.720026 B = 7696.070832 C = 7789.617322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.164 4.164 3 C 0.004 3.996 4 N -0.535 5.535 5 H 0.435 0.565 6 C 0.075 3.925 7 C -0.093 4.093 8 C -0.260 4.260 9 C 0.592 3.408 10 O -0.595 6.595 11 N -0.706 5.706 12 C 0.129 3.871 13 C -0.100 4.100 14 C 0.024 3.976 15 C -0.541 4.541 16 H 0.066 0.934 17 C -0.003 4.003 18 N -0.936 5.936 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.260 1.260 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.041 0.959 26 H 0.208 0.792 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.413 0.587 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.069 0.931 35 H -0.007 1.007 36 H -0.008 1.008 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.784 24.578 3.271 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.170 4.170 3 C -0.124 4.124 4 N -0.131 5.131 5 H 0.275 0.725 6 C -0.043 4.043 7 C -0.150 4.150 8 C -0.271 4.271 9 C 0.379 3.621 10 O -0.476 6.476 11 N -0.357 5.357 12 C 0.005 3.995 13 C -0.138 4.138 14 C -0.014 4.014 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.201 4.201 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.184 1.184 23 H 0.077 0.923 24 H 0.109 0.891 25 H 0.060 0.940 26 H 0.224 0.776 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.249 0.751 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.012 0.988 36 H 0.010 0.990 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.723 24.098 4.037 25.944 hybrid contribution -0.074 -0.686 -0.767 1.031 sum 8.649 23.412 3.270 25.172 Atomic orbital electron populations 1.20130 0.89500 1.02478 1.01642 1.20709 0.95810 0.90735 1.09774 1.21967 0.81866 0.99819 1.08777 1.41355 1.08941 1.05180 1.57640 0.72511 1.20263 0.95129 0.84608 1.04289 1.20493 0.92223 0.98144 1.04157 1.20067 0.94680 0.91413 1.20898 1.17991 0.75104 0.86076 0.82895 1.90739 1.53772 1.69981 1.33097 1.46049 1.68475 1.12211 1.08947 1.21269 0.98893 0.81056 0.98316 1.21587 1.01645 0.97078 0.93462 1.18946 0.94787 0.91643 0.96027 1.21673 1.45858 0.96929 0.93453 0.91549 1.26037 0.94958 0.97218 1.01891 1.70116 1.47821 1.06403 1.33238 0.85397 0.77989 0.78163 0.79182 1.19736 1.21008 1.18426 0.92313 0.89054 0.93982 0.77572 0.89007 0.88386 0.92263 0.75111 0.93062 0.93471 0.91560 0.91282 0.98850 0.99007 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.70 10.35 71.24 0.74 -0.96 16 2 C -0.16 -3.74 6.36 -18.51 -0.12 -3.86 16 3 C 0.00 0.06 11.82 83.12 0.98 1.05 16 4 N -0.53 -7.01 5.90 -182.72 -1.08 -8.09 16 5 H 0.43 2.18 8.96 -92.71 -0.83 1.35 16 6 C 0.07 1.52 7.17 41.78 0.30 1.82 16 7 C -0.09 -1.52 10.23 71.24 0.73 -0.79 16 8 C -0.26 -7.21 6.05 -19.04 -0.12 -7.33 16 9 C 0.59 20.79 7.21 86.62 0.62 21.41 16 10 O -0.59 -26.39 17.11 -4.14 -0.07 -26.46 16 11 N -0.71 -22.81 5.55 -466.53 -2.59 -25.40 16 12 C 0.13 4.94 5.67 86.38 0.49 5.43 16 13 C -0.10 -4.04 5.27 30.59 0.16 -3.88 16 14 C 0.02 1.26 4.97 29.85 0.15 1.41 16 15 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 16 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 17 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 18 N -0.94 -57.86 13.29 21.45 0.28 -57.58 16 19 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 23 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.21 1.31 8.06 -2.91 -0.02 1.28 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.30 7.93 -2.39 -0.02 1.28 16 30 H 0.41 10.97 8.46 -92.71 -0.78 10.19 16 31 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 35 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 36 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -77.60 321.39 2.66 -74.94 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -0.54 Total: 12.27 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 4.63 Total: -15.91 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -3.38 Total: -91.07 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.07 Total: -26.46 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -77.60 2.66 -74.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193360140.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.675 kcal (2) G-P(sol) polarization free energy of solvation -77.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds