Wall clock time and date at job start Sun Mar 29 2020 22:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00251 * 2 1 4 4 C 1.38753 * 120.05684 * 359.95691 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02482 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.46613 * 145.00276 * 9 8 7 11 11 C 1.52997 * 109.47072 * 264.99471 * 9 8 7 12 12 O 1.42894 * 109.47573 * 25.00397 * 9 8 7 13 13 C 1.42900 * 114.00502 * 149.99941 * 12 9 8 14 14 C 1.53000 * 109.47257 * 179.97438 * 13 12 9 15 15 C 1.50693 * 109.47011 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00657 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99939 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99976 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00083 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47364 * 89.99647 * 19 17 15 21 21 H 1.48497 * 109.47211 * 210.00222 * 19 17 15 22 22 H 1.48509 * 109.46824 * 329.99760 * 19 17 15 23 23 H 1.08993 * 109.47446 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47023 * 300.00310 * 1 2 3 25 25 H 1.09001 * 109.47048 * 59.99886 * 1 2 3 26 26 H 1.08002 * 120.02760 * 0.04235 * 4 3 2 27 27 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 28 28 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 30 30 H 1.09005 * 109.46744 * 60.00885 * 11 9 8 31 31 H 1.09001 * 109.47431 * 179.97438 * 11 9 8 32 32 H 1.08995 * 109.47459 * 300.00397 * 11 9 8 33 33 H 1.09001 * 109.47051 * 299.99873 * 13 12 9 34 34 H 1.09003 * 109.46987 * 59.99547 * 13 12 9 35 35 H 1.09001 * 109.47181 * 300.00032 * 14 13 12 36 36 H 1.08996 * 109.47209 * 59.99560 * 14 13 12 37 37 H 0.96999 * 120.00044 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6048 -0.0014 6 6 3.3021 3.6757 -0.0005 7 6 4.0561 2.5170 0.0004 8 6 3.4312 1.2847 0.0009 9 6 4.2538 0.0221 0.0025 10 1 3.7463 -0.7414 0.5922 11 6 4.4277 -0.4750 -1.4340 12 8 5.5364 0.2898 0.5726 13 6 6.1224 -0.8310 1.2378 14 6 7.4858 -0.4315 1.8056 15 6 8.1039 -1.6137 2.5065 16 1 7.5770 -2.5557 2.5437 17 6 9.3419 -1.4925 3.1013 18 7 9.9835 -0.3453 3.0565 19 14 10.1085 -2.9581 3.9695 20 1 10.9248 -3.7350 3.0024 21 1 10.9748 -2.4799 5.0768 22 1 9.0351 -3.8245 4.5196 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2129 2.3204 -0.0009 27 1 1.3342 4.5114 0.0020 28 1 3.7924 4.6380 -0.0014 29 1 5.1345 2.5751 0.0006 30 1 4.9352 0.2884 -2.0237 31 1 5.0231 -1.3881 -1.4330 32 1 3.4494 -0.6793 -1.8688 33 1 5.4705 -1.1531 2.0498 34 1 6.2501 -1.6486 0.5282 35 1 8.1375 -0.1096 0.9933 36 1 7.3585 0.3862 2.5149 37 1 10.8543 -0.2599 3.4753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205631606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:53 Heat of formation + Delta-G solvation = -72.849146 kcal Electronic energy + Delta-G solvation = -17923.455773 eV Core-core repulsion = 15051.868125 eV Total energy + Delta-G solvation = -2871.587647 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.29244 -37.87238 -36.96589 -33.48331 -32.33110 -30.12789 -29.72737 -28.87972 -27.34005 -24.70426 -23.46164 -22.05929 -20.76613 -20.68502 -18.02261 -16.72790 -16.25904 -15.89306 -15.78668 -15.04196 -14.68688 -14.56954 -14.35960 -14.00097 -13.51339 -13.03409 -12.56736 -12.38645 -12.23003 -12.12469 -11.83333 -11.61953 -11.23286 -11.16956 -10.99054 -10.84838 -10.49906 -10.29888 -10.22260 -9.44951 -9.16203 -8.90978 -8.71312 -8.32273 -8.10915 -6.00150 -4.03365 1.38836 1.48803 3.22195 3.33095 3.38830 3.42259 3.81364 4.22670 4.50539 4.74841 4.95621 4.98058 4.98591 5.15267 5.27684 5.35663 5.35986 5.48425 5.50502 5.62635 5.84854 5.93123 6.04185 6.13225 6.30457 6.34695 6.38033 6.47659 6.51391 6.66869 6.87740 6.95233 7.36602 7.60587 7.83799 7.88161 8.16795 8.40335 9.03257 9.60111 11.11564 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032207 B = 0.004287 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.169252 B = 6529.687023 C = 6965.151617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.128 3.872 4 C -0.213 4.213 5 C -0.088 4.088 6 C -0.159 4.159 7 C -0.053 4.053 8 C -0.107 4.107 9 C 0.131 3.869 10 H 0.067 0.933 11 C -0.162 4.162 12 O -0.384 6.384 13 C 0.070 3.930 14 C 0.026 3.974 15 C -0.523 4.523 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.896 3.104 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 H 0.098 0.902 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.141 0.859 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.034 0.966 34 H 0.035 0.965 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.060 4.689 -7.938 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.083 3.917 4 C -0.232 4.232 5 C -0.106 4.106 6 C -0.177 4.177 7 C -0.071 4.071 8 C -0.108 4.108 9 C 0.073 3.927 10 H 0.085 0.915 11 C -0.220 4.220 12 O -0.303 6.303 13 C -0.005 4.005 14 C -0.011 4.011 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 H 0.116 0.884 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.143 0.857 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.159 0.841 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.723 4.750 -7.888 20.864 hybrid contribution 0.038 -0.833 0.548 0.998 sum -18.685 3.917 -7.340 20.453 Atomic orbital electron populations 1.23025 0.78766 1.03770 1.01132 1.86094 1.21018 1.26927 1.88747 1.18770 0.91428 0.84247 0.97258 1.21095 0.99593 0.92331 1.10184 1.20895 0.94750 0.96713 0.98218 1.21114 0.93787 0.98583 1.04256 1.21015 1.01118 0.90446 0.94556 1.19277 0.89877 0.96134 1.05500 1.20508 0.85073 0.92864 0.94246 0.91487 1.22187 1.01629 1.01665 0.96516 1.87910 1.31064 1.38159 1.73203 1.22908 0.96832 0.87167 0.93629 1.19062 0.88535 0.97361 0.96176 1.21066 1.02926 0.97044 1.35085 0.92575 1.24988 0.97047 0.95953 0.96270 1.69982 1.14437 1.24088 1.44525 0.86538 0.79227 0.82615 0.79290 1.20587 1.21138 1.19837 0.88369 0.92781 0.92845 0.85735 0.86132 0.85888 0.84146 0.92067 0.92033 0.92172 0.94740 0.94661 0.95747 0.95767 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.09 9.63 -19.41 -0.19 -4.28 16 3 C 0.13 1.80 6.66 -39.22 -0.26 1.54 16 4 C -0.21 -2.51 9.04 -39.43 -0.36 -2.87 16 5 C -0.09 -1.00 10.04 -39.60 -0.40 -1.39 16 6 C -0.16 -2.02 10.04 -39.56 -0.40 -2.42 16 7 C -0.05 -0.82 9.35 -39.61 -0.37 -1.19 16 8 C -0.11 -1.71 5.08 -104.47 -0.53 -2.24 16 9 C 0.13 2.27 2.66 -27.89 -0.07 2.20 16 10 H 0.07 1.17 7.34 -51.93 -0.38 0.79 16 11 C -0.16 -2.46 9.51 37.16 0.35 -2.11 16 12 O -0.38 -8.01 8.83 -35.23 -0.31 -8.33 16 13 C 0.07 1.59 5.69 37.16 0.21 1.80 16 14 C 0.03 0.71 5.34 -27.89 -0.15 0.56 16 15 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 19 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 25 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 26 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 27 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.14 2.26 7.35 -52.49 -0.39 1.88 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.93 7.87 -51.93 -0.41 0.52 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 34 H 0.04 0.76 7.87 -51.93 -0.41 0.36 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -32.01 313.40 -7.08 -39.09 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -5.63 Total: -2.80 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -1.39 Total: -18.73 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.50 Total: -12.60 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.01 -7.08 -39.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.758 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds