Wall clock time and date at job start Sun Mar 29 2020 22:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00251 * 2 1 4 4 C 1.38753 * 120.05684 * 359.95691 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02482 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.46613 * 145.00276 * 9 8 7 11 11 C 1.52997 * 109.47072 * 264.99471 * 9 8 7 12 12 O 1.42894 * 109.47573 * 25.00397 * 9 8 7 13 13 C 1.42900 * 114.00502 * 149.99941 * 12 9 8 14 14 C 1.53000 * 109.47257 * 179.97438 * 13 12 9 15 15 C 1.50693 * 109.47011 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00657 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99939 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99976 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00083 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47364 * 89.99647 * 19 17 15 21 21 H 1.48497 * 109.47211 * 210.00222 * 19 17 15 22 22 H 1.48509 * 109.46824 * 329.99760 * 19 17 15 23 23 H 1.08993 * 109.47446 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47023 * 300.00310 * 1 2 3 25 25 H 1.09001 * 109.47048 * 59.99886 * 1 2 3 26 26 H 1.08002 * 120.02760 * 0.04235 * 4 3 2 27 27 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 28 28 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 29 29 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 30 30 H 1.09005 * 109.46744 * 60.00885 * 11 9 8 31 31 H 1.09001 * 109.47431 * 179.97438 * 11 9 8 32 32 H 1.08995 * 109.47459 * 300.00397 * 11 9 8 33 33 H 1.09001 * 109.47051 * 299.99873 * 13 12 9 34 34 H 1.09003 * 109.46987 * 59.99547 * 13 12 9 35 35 H 1.09001 * 109.47181 * 300.00032 * 14 13 12 36 36 H 1.08996 * 109.47209 * 59.99560 * 14 13 12 37 37 H 0.96999 * 120.00044 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6048 -0.0014 6 6 3.3021 3.6757 -0.0005 7 6 4.0561 2.5170 0.0004 8 6 3.4312 1.2847 0.0009 9 6 4.2538 0.0221 0.0025 10 1 3.7463 -0.7414 0.5922 11 6 4.4277 -0.4750 -1.4340 12 8 5.5364 0.2898 0.5726 13 6 6.1224 -0.8310 1.2378 14 6 7.4858 -0.4315 1.8056 15 6 8.1039 -1.6137 2.5065 16 1 7.5770 -2.5557 2.5437 17 6 9.3419 -1.4925 3.1013 18 7 9.9835 -0.3453 3.0565 19 14 10.1085 -2.9581 3.9695 20 1 10.9248 -3.7350 3.0024 21 1 10.9748 -2.4799 5.0768 22 1 9.0351 -3.8245 4.5196 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.2129 2.3204 -0.0009 27 1 1.3342 4.5114 0.0020 28 1 3.7924 4.6380 -0.0014 29 1 5.1345 2.5751 0.0006 30 1 4.9352 0.2884 -2.0237 31 1 5.0231 -1.3881 -1.4330 32 1 3.4494 -0.6793 -1.8688 33 1 5.4705 -1.1531 2.0498 34 1 6.2501 -1.6486 0.5282 35 1 8.1375 -0.1096 0.9933 36 1 7.3585 0.3862 2.5149 37 1 10.8543 -0.2599 3.4753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205631606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:53 Heat of formation + Delta-G solvation = -91.956980 kcal Electronic energy + Delta-G solvation = -17924.284350 eV Core-core repulsion = 15051.868125 eV Total energy + Delta-G solvation = -2872.416225 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.29058 -39.23408 -38.10308 -35.51131 -33.84599 -31.62125 -31.11384 -30.10514 -28.08556 -26.73996 -24.69601 -23.21032 -22.64348 -21.87812 -18.98727 -18.67460 -17.57981 -17.17814 -16.69703 -16.54077 -16.34953 -16.25697 -15.43497 -15.15999 -14.52761 -14.45335 -14.27909 -14.01565 -13.52173 -13.20202 -13.12363 -12.89006 -12.78107 -12.60582 -12.44176 -12.29383 -11.98056 -11.96333 -11.57248 -11.42608 -11.34085 -10.68031 -10.43720 -9.79571 -9.10590 -8.23639 -6.36938 0.36423 0.48612 1.40758 1.43454 1.54610 2.37321 2.39231 2.75825 2.87228 3.10073 3.76400 3.99161 4.11663 4.12591 4.27961 4.32752 4.42967 4.44007 4.46423 4.47408 4.55159 4.73319 4.75894 4.82581 4.88108 4.92625 5.06919 5.21669 5.31259 5.38668 5.49435 5.57595 5.62361 5.73994 5.88431 6.12134 6.45571 6.46423 6.78463 7.32732 8.89525 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.032207 B = 0.004287 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.169252 B = 6529.687023 C = 6965.151617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.122 3.878 4 C -0.208 4.208 5 C -0.079 4.079 6 C -0.164 4.164 7 C -0.077 4.077 8 C -0.137 4.137 9 C 0.128 3.872 10 H 0.062 0.938 11 C -0.155 4.155 12 O -0.400 6.400 13 C 0.087 3.913 14 C 0.031 3.969 15 C -0.547 4.547 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.975 3.025 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.261 1.261 23 H 0.115 0.885 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.046 0.954 35 H -0.004 1.004 36 H -0.007 1.007 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.233 4.179 -7.953 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.076 3.924 4 C -0.227 4.227 5 C -0.097 4.097 6 C -0.182 4.182 7 C -0.095 4.095 8 C -0.138 4.138 9 C 0.070 3.930 10 H 0.080 0.920 11 C -0.212 4.212 12 O -0.320 6.320 13 C 0.011 3.989 14 C -0.007 4.007 15 C -0.585 4.585 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.798 3.202 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.185 1.185 23 H 0.134 0.866 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.175 0.825 27 H 0.176 0.824 28 H 0.159 0.841 29 H 0.134 0.866 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.014 0.986 36 H 0.011 0.989 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.923 4.238 -7.918 22.769 hybrid contribution 0.595 -0.591 0.515 0.984 sum -20.329 3.648 -7.403 21.940 Atomic orbital electron populations 1.23360 0.76319 1.05505 1.02435 1.86062 1.23584 1.26693 1.88618 1.18850 0.90848 0.85538 0.97128 1.21494 1.01165 0.91509 1.08500 1.21336 0.94232 0.98111 0.96033 1.21357 0.94739 0.98331 1.03779 1.20956 1.00340 0.91701 0.96553 1.19250 0.91030 0.95384 1.08128 1.20691 0.83313 0.94118 0.94860 0.91957 1.22119 1.02592 1.01206 0.95297 1.87881 1.33189 1.37566 1.73407 1.22493 0.94587 0.87734 0.94069 1.18911 0.90844 0.96290 0.94611 1.21467 1.03703 0.97687 1.35632 0.91557 1.26041 0.97497 0.99305 0.96849 1.70127 1.14993 1.26640 1.45357 0.85305 0.78381 0.78447 0.78034 1.19459 1.20528 1.18489 0.86639 0.91705 0.91152 0.82471 0.82449 0.84061 0.86561 0.92409 0.92335 0.90260 0.94297 0.93599 0.98586 0.98862 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.21 9.63 -92.39 -0.89 -9.10 16 3 C 0.12 3.26 6.66 22.51 0.15 3.41 16 4 C -0.21 -4.28 9.04 22.37 0.20 -4.08 16 5 C -0.08 -1.56 10.04 22.26 0.22 -1.34 16 6 C -0.16 -4.00 10.04 22.28 0.22 -3.77 16 7 C -0.08 -2.44 9.35 22.25 0.21 -2.23 16 8 C -0.14 -4.43 5.08 -19.77 -0.10 -4.53 16 9 C 0.13 4.53 2.66 29.85 0.08 4.61 16 10 H 0.06 2.23 7.34 -2.38 -0.02 2.21 16 11 C -0.15 -4.73 9.51 71.98 0.68 -4.05 16 12 O -0.40 -17.56 8.83 -148.98 -1.31 -18.87 16 13 C 0.09 4.09 5.69 71.98 0.41 4.50 16 14 C 0.03 1.76 5.34 29.85 0.16 1.92 16 15 C -0.55 -32.30 9.11 25.60 0.23 -32.07 16 16 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 17 C 0.00 0.08 5.46 84.66 0.46 0.54 16 18 N -0.93 -58.27 13.29 21.45 0.28 -57.98 16 19 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.06 0.75 7.66 -2.38 -0.02 0.73 16 25 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 26 H 0.16 2.13 6.30 -2.91 -0.02 2.12 16 27 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 28 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 29 H 0.12 4.09 7.35 -2.91 -0.02 4.07 16 30 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.06 1.78 7.87 -2.39 -0.02 1.76 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.04 1.77 8.09 -2.39 -0.02 1.75 16 34 H 0.05 2.03 7.87 -2.39 -0.02 2.01 16 35 H 0.00 -0.27 8.14 -2.39 -0.02 -0.28 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -71.05 313.40 5.19 -65.87 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 1.03 Total: 9.01 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 4.05 Total: -35.74 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.28 Total: -57.98 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -2.20 Total: -27.97 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -71.05 5.19 -65.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.091 kcal (2) G-P(sol) polarization free energy of solvation -71.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds