Wall clock time and date at job start Sun Mar 29 2020 22:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47173 * 2 1 4 4 O 1.42899 * 109.47047 * 120.00416 * 2 1 3 5 5 C 1.42898 * 113.99995 * 150.00009 * 4 2 1 6 6 C 1.52996 * 109.47476 * 180.02562 * 5 4 2 7 7 O 1.42896 * 109.47131 * 64.99326 * 6 5 4 8 8 C 1.35642 * 117.00365 * 180.02562 * 7 6 5 9 9 C 1.38449 * 120.26131 * 0.28192 * 8 7 6 10 10 C 1.38309 * 120.04764 * 180.25632 * 9 8 7 11 11 C 1.38823 * 120.59178 * 359.74123 * 10 9 8 12 12 C 1.36486 * 120.54052 * 359.97438 * 11 10 9 13 13 C 1.40723 * 119.92690 * 0.02562 * 12 11 10 14 14 C 1.41149 * 120.28821 * 179.97438 * 13 12 11 15 15 H 1.08009 * 120.00238 * 205.26740 * 14 13 12 16 16 C 1.39941 * 120.00200 * 25.26787 * 14 13 12 17 17 N 1.30862 * 119.99614 * 26.52478 * 16 14 13 18 18 Si 1.86803 * 120.00095 * 206.52797 * 16 14 13 19 19 H 1.48500 * 109.46947 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.46859 * 299.99821 * 18 16 14 21 21 H 1.48501 * 109.47170 * 59.99665 * 18 16 14 22 22 H 1.09003 * 109.46914 * 300.00078 * 1 2 3 23 23 H 1.09005 * 109.47062 * 59.99591 * 1 2 3 24 24 H 1.08996 * 109.47035 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46643 * 240.00632 * 2 1 3 26 26 H 1.08995 * 109.47432 * 300.00318 * 3 2 1 27 27 H 1.09008 * 109.46962 * 60.00488 * 3 2 1 28 28 H 1.08998 * 109.47053 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47056 * 59.99642 * 5 4 2 30 30 H 1.09000 * 109.47139 * 299.99937 * 5 4 2 31 31 H 1.09007 * 109.46852 * 305.00256 * 6 5 4 32 32 H 1.08992 * 109.47653 * 184.99991 * 6 5 4 33 33 H 1.08001 * 119.97891 * 359.97153 * 9 8 7 34 34 H 1.07997 * 119.70209 * 179.76369 * 10 9 8 35 35 H 1.07998 * 119.73084 * 179.97438 * 11 10 9 36 36 H 1.07996 * 120.03916 * 180.02562 * 12 11 10 37 37 H 0.97002 * 120.00148 * 5.89107 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9885 6 6 3.6755 -2.0093 2.2940 7 8 2.7489 -3.0548 2.5945 8 6 2.9694 -3.7661 3.7282 9 6 4.0489 -3.4659 4.5414 10 6 4.2726 -4.1975 5.6936 11 6 3.4192 -5.2329 6.0499 12 6 2.3444 -5.5457 5.2690 13 6 2.0958 -4.8158 4.0918 14 6 0.9869 -5.1332 3.2782 15 1 1.0028 -4.8922 2.2255 16 6 -0.1333 -5.7600 3.8356 17 7 -0.4089 -5.5996 5.1047 18 14 -1.2349 -6.8259 2.7679 19 1 -2.3445 -7.3707 3.5908 20 1 -1.7948 -6.0074 1.6625 21 1 -0.4416 -7.9462 2.2016 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.6767 1.9564 -0.8899 27 1 1.6768 1.9563 0.8901 28 1 3.1300 1.4425 0.0005 29 1 4.0199 -0.5874 0.7124 30 1 3.1809 -2.0707 0.1985 31 1 3.6742 -1.2790 3.1032 32 1 4.6752 -2.4299 2.1857 33 1 4.7194 -2.6628 4.2735 34 1 5.1186 -3.9610 6.3219 35 1 3.6072 -5.7954 6.9525 36 1 1.6856 -6.3525 5.5541 37 1 0.1115 -4.9798 5.6395 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230271539.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:22 Heat of formation + Delta-G solvation = -100.068842 kcal Electronic energy + Delta-G solvation = -18189.004193 eV Core-core repulsion = 15316.236211 eV Total energy + Delta-G solvation = -2872.767982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.136 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.64537 -39.36028 -37.98685 -35.70204 -33.94842 -31.64134 -30.89453 -29.90827 -28.11425 -26.89685 -24.40365 -22.74284 -22.25391 -22.13848 -19.95462 -18.58063 -17.91593 -16.85947 -16.62564 -16.39108 -15.83718 -15.82064 -15.64396 -14.88923 -14.70236 -14.31566 -13.87608 -13.81663 -13.47345 -13.31949 -13.08843 -12.95889 -12.72969 -12.45255 -12.37156 -12.07400 -11.94005 -11.80489 -11.69497 -11.55735 -11.24303 -10.83143 -10.54232 -9.60200 -9.29689 -8.87966 -6.31425 0.83849 0.95711 1.48712 1.62743 1.79249 2.34362 2.62441 2.68064 2.70237 3.51965 3.87078 4.03864 4.11747 4.15069 4.24997 4.26379 4.36468 4.39097 4.40535 4.53188 4.69967 4.72662 4.85855 4.91233 4.91883 4.93255 5.16096 5.25698 5.29452 5.31983 5.52747 5.75973 5.81676 5.99047 6.15448 6.32638 6.36393 6.52317 6.91352 7.13901 8.05940 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.007111 C = 0.005217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.965223 B = 3936.651941 C = 5365.716238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.068 3.932 3 C -0.167 4.167 4 O -0.408 6.408 5 C 0.071 3.929 6 C 0.054 3.946 7 O -0.326 6.326 8 C -0.002 4.002 9 C -0.173 4.173 10 C -0.215 4.215 11 C -0.117 4.117 12 C -0.220 4.220 13 C 0.048 3.952 14 C -0.542 4.542 15 H 0.062 0.938 16 C 0.003 3.997 17 N -0.819 5.819 18 Si 1.115 2.885 19 H -0.267 1.267 20 H -0.263 1.263 21 H -0.262 1.262 22 H 0.052 0.948 23 H 0.097 0.903 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 9.355 -9.557 14.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.011 3.989 3 C -0.224 4.224 4 O -0.328 6.328 5 C -0.006 4.006 6 C -0.021 4.021 7 O -0.242 6.242 8 C -0.047 4.047 9 C -0.192 4.192 10 C -0.235 4.235 11 C -0.135 4.135 12 C -0.239 4.239 13 C 0.046 3.954 14 C -0.570 4.570 15 H 0.080 0.920 16 C -0.212 4.212 17 N -0.443 5.443 18 Si 0.931 3.069 19 H -0.191 1.191 20 H -0.187 1.187 21 H -0.187 1.187 22 H 0.071 0.929 23 H 0.115 0.885 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.426 8.371 -9.427 13.064 hybrid contribution 1.654 1.087 0.234 1.993 sum 5.080 9.458 -9.193 14.134 Atomic orbital electron populations 1.21896 0.93822 1.01978 1.03090 1.22349 0.95346 0.93438 0.87740 1.22251 1.01751 0.95320 1.03094 1.88043 1.37440 1.70327 1.37033 1.22632 0.86764 0.95587 0.95581 1.22912 0.92843 0.88714 0.97617 1.85981 1.52246 1.46161 1.39765 1.19352 0.99613 0.95669 0.90027 1.21049 0.98095 1.02674 0.97352 1.20583 1.02743 1.00755 0.99382 1.20628 0.95199 0.98498 0.99160 1.20663 1.01460 1.02586 0.99231 1.17506 0.93765 0.90427 0.93733 1.20443 1.01610 1.37545 0.97418 0.91975 1.28409 0.98594 0.96761 0.97478 1.70582 1.36923 1.28300 1.08456 0.83061 0.74418 0.75301 0.74089 1.19102 1.18727 1.18658 0.92910 0.88473 0.93847 0.91163 0.89483 0.92795 0.91859 0.88134 0.92655 0.92570 0.89743 0.85242 0.85361 0.86441 0.88856 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.56 71.98 0.69 -2.98 16 2 C 0.07 1.68 3.34 30.60 0.10 1.78 16 3 C -0.17 -3.10 9.53 71.98 0.69 -2.41 16 4 O -0.41 -13.81 9.95 -144.33 -1.44 -15.25 16 5 C 0.07 2.04 6.13 71.98 0.44 2.48 16 6 C 0.05 1.91 5.12 71.98 0.37 2.28 16 7 O -0.33 -15.99 9.40 -84.91 -0.80 -16.79 16 8 C 0.00 -0.11 6.72 23.08 0.16 0.05 16 9 C -0.17 -7.75 9.04 22.34 0.20 -7.54 16 10 C -0.22 -9.34 10.04 22.43 0.23 -9.11 16 11 C -0.12 -5.47 9.97 22.00 0.22 -5.25 16 12 C -0.22 -11.94 7.93 22.47 0.18 -11.77 16 13 C 0.05 2.79 5.30 -21.20 -0.11 2.68 16 14 C -0.54 -31.89 8.64 23.40 0.20 -31.69 16 15 H 0.06 3.73 7.72 -2.91 -0.02 3.71 16 16 C 0.00 0.14 4.91 85.25 0.42 0.56 16 17 N -0.82 -46.92 12.32 21.83 0.27 -46.65 16 18 Si 1.11 46.38 30.01 68.60 2.06 48.44 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 22 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.52 7.79 -2.39 -0.02 1.50 16 26 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.05 1.10 8.14 -2.38 -0.02 1.09 16 28 H 0.06 1.05 7.87 -2.39 -0.02 1.04 16 29 H 0.10 2.05 7.87 -2.39 -0.02 2.03 16 30 H 0.06 1.59 8.09 -2.39 -0.02 1.57 16 31 H 0.06 1.95 7.65 -2.38 -0.02 1.93 16 32 H 0.08 2.53 7.68 -2.39 -0.02 2.51 16 33 H 0.13 4.80 6.31 -2.91 -0.02 4.78 16 34 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 35 H 0.12 4.76 8.06 -2.91 -0.02 4.73 16 36 H 0.09 5.27 6.52 -2.91 -0.02 5.25 16 37 H 0.28 16.78 6.78 -92.71 -0.63 16.15 16 Total: -1.00 -69.02 310.33 5.04 -63.98 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 1.18 Total: 27.19 kcal Atomic # 6 Polarization: -64.70 SS G_CDS: 3.77 Total: -60.93 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.27 Total: -46.65 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -2.23 Total: -32.04 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.06 Total: 48.44 kcal Total: -69.02 5.04 -63.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230271539.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.090 kcal (2) G-P(sol) polarization free energy of solvation -69.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds