Wall clock time and date at job start Sun Mar 29 2020 22:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99858 * 2 1 4 4 H 1.48490 * 109.47473 * 240.00388 * 3 2 1 5 5 H 1.48503 * 109.47236 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47208 * 120.00079 * 3 2 1 7 7 C 1.37869 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99912 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00476 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47262 * 179.97438 * 9 7 2 11 11 C 1.50710 * 109.46884 * 180.02562 * 10 9 7 12 12 N 1.30274 * 126.27763 * 89.96319 * 11 10 9 13 13 N 1.28674 * 109.37802 * 180.02562 * 12 11 10 14 14 C 1.30274 * 109.37972 * 359.97438 * 13 12 11 15 15 C 1.50703 * 126.28371 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47277 * 89.95481 * 15 14 13 17 17 C 1.54264 * 110.03132 * 292.17002 * 16 15 14 18 18 C 1.54886 * 104.19691 * 217.10410 * 17 16 15 19 19 C 1.54896 * 102.74640 * 37.94337 * 18 17 16 20 20 C 1.53869 * 110.03231 * 175.00167 * 16 15 14 21 21 O 1.34356 * 126.28319 * 270.00440 * 11 10 9 22 22 H 0.96999 * 120.00261 * 359.97438 * 1 2 3 23 23 H 1.09008 * 109.46842 * 60.00415 * 9 7 2 24 24 H 1.08995 * 109.47321 * 300.00810 * 9 7 2 25 25 H 1.08998 * 109.46581 * 60.00993 * 10 9 7 26 26 H 1.08990 * 109.47483 * 300.00020 * 10 9 7 27 27 H 1.08999 * 109.46841 * 209.95855 * 15 14 13 28 28 H 1.09002 * 109.46633 * 329.95567 * 15 14 13 29 29 H 1.08996 * 110.01341 * 53.60797 * 16 15 14 30 30 H 1.09006 * 110.48643 * 335.78081 * 17 16 15 31 31 H 1.08998 * 110.48787 * 98.42490 * 17 16 15 32 32 H 1.08994 * 110.75625 * 279.63117 * 18 17 16 33 33 H 1.09005 * 110.76160 * 156.25441 * 18 17 16 34 34 H 1.09005 * 110.48397 * 203.37875 * 19 18 17 35 35 H 1.08998 * 110.48885 * 80.73883 * 19 18 17 36 36 H 1.08993 * 110.03389 * 238.57072 * 20 16 15 37 37 H 1.09004 * 110.03278 * 359.95445 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4919 -4.9672 -0.0025 12 7 1.1055 -5.6337 -1.0530 13 7 0.4898 -6.7000 -0.6795 14 6 0.4630 -6.7503 0.6220 15 6 -0.1622 -7.8357 1.4599 16 6 0.8751 -8.9249 1.7403 17 6 1.2296 -9.6658 0.4345 18 6 1.4148 -11.1399 0.8724 19 6 0.3073 -11.3210 1.9400 20 6 0.2887 -9.9773 2.6976 21 8 1.0948 -5.6565 1.0802 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8726 -3.6047 0.8878 26 1 2.8714 -3.6039 -0.8922 27 1 -0.5088 -7.4126 2.4027 28 1 -1.0068 -8.2679 0.9232 29 1 1.7717 -8.4831 2.1750 30 1 0.4153 -9.5811 -0.2852 31 1 2.1551 -9.2740 0.0128 32 1 2.4015 -11.2918 1.3098 33 1 1.2554 -11.8156 0.0320 34 1 0.5599 -12.1372 2.6170 35 1 -0.6558 -11.5037 1.4635 36 1 0.9013 -10.0469 3.5964 37 1 -0.7346 -9.7116 2.9630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258640427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:19 Heat of formation + Delta-G solvation = -23.361460 kcal Electronic energy + Delta-G solvation = -17697.129408 eV Core-core repulsion = 14859.980459 eV Total energy + Delta-G solvation = -2837.148949 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.24227 -39.38287 -37.18681 -36.31970 -34.47848 -33.19467 -30.50858 -29.53600 -27.79524 -26.52828 -24.47262 -23.40615 -22.56382 -21.51200 -20.63244 -18.80003 -18.25516 -17.95765 -17.10704 -16.52661 -16.03222 -15.77593 -15.44847 -14.90606 -14.70513 -14.29663 -14.17351 -13.56739 -13.49888 -13.22522 -12.95848 -12.85199 -12.64915 -12.32034 -12.14894 -11.98401 -11.94358 -11.91422 -11.78129 -11.74893 -11.55176 -11.40259 -11.28388 -10.59916 -10.37817 -8.23831 -6.37115 0.16195 1.28730 1.34633 1.43881 1.46942 1.54762 2.40620 2.87845 3.10902 3.43223 3.61513 3.65665 3.78497 3.95637 4.30559 4.33965 4.35549 4.45213 4.47258 4.54971 4.56938 4.64645 4.71963 4.82603 4.87445 4.88243 4.92679 5.06047 5.11855 5.27998 5.35109 5.36206 5.45189 5.46772 5.52330 5.72618 6.08362 6.77886 7.28019 7.33347 8.88626 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.060328 B = 0.003544 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.016524 B = 7898.747834 C = 7986.283569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.035 3.965 10 C -0.011 4.011 11 C 0.182 3.818 12 N -0.328 5.328 13 N -0.314 5.314 14 C 0.159 3.841 15 C -0.015 4.015 16 C -0.087 4.087 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.113 4.113 21 O -0.232 6.232 22 H 0.265 0.735 23 H -0.008 1.008 24 H -0.005 1.005 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 -20.948 7.151 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.096 0.904 9 C -0.003 4.003 10 C -0.049 4.049 11 C -0.029 4.029 12 N -0.174 5.174 13 N -0.159 5.159 14 C -0.052 4.052 15 C -0.053 4.053 16 C -0.106 4.106 17 C -0.161 4.161 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.150 4.150 21 O -0.113 6.113 22 H 0.074 0.926 23 H 0.010 0.990 24 H 0.013 0.987 25 H 0.126 0.874 26 H 0.130 0.870 27 H 0.136 0.864 28 H 0.143 0.857 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.447 -21.173 5.894 22.026 hybrid contribution 0.256 1.516 0.784 1.726 sum 1.703 -19.657 6.678 20.831 Atomic orbital electron populations 1.70115 1.08143 1.28154 1.51089 1.26049 0.95737 1.03752 0.94328 0.85372 0.78098 0.77349 0.79477 1.18931 1.21235 1.18626 1.21533 0.94141 0.90997 1.51426 0.90425 1.18936 0.93935 0.92044 0.95359 1.20448 0.96697 0.81951 1.05800 1.28714 0.97617 0.97495 0.79112 1.74330 1.13987 1.02468 1.26568 1.74216 1.17209 1.13890 1.10630 1.28875 0.95645 0.88896 0.91815 1.20754 0.98085 0.87944 0.98494 1.21818 0.97253 0.94622 0.96941 1.22459 1.00715 0.96240 0.96692 1.22500 0.99506 0.94972 0.99087 1.22373 0.98909 0.97218 0.97401 1.22176 1.02118 0.93289 0.97464 1.84799 1.57014 1.30854 1.38585 0.92629 0.98997 0.98706 0.87385 0.86951 0.86385 0.85742 0.91400 0.91463 0.94195 0.91451 0.91153 0.90411 0.90975 0.90499 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.87 13.29 21.45 0.28 -56.58 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 43.13 29.54 68.60 2.03 45.16 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.54 -29.83 9.11 25.60 0.23 -29.59 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.88 16 9 C 0.04 1.87 4.96 29.85 0.15 2.01 16 10 C -0.01 -0.43 5.78 29.85 0.17 -0.26 16 11 C 0.18 7.50 7.73 88.34 0.68 8.18 16 12 N -0.33 -14.22 12.22 -165.50 -2.02 -16.24 16 13 N -0.31 -12.09 12.22 -165.50 -2.02 -14.11 16 14 C 0.16 5.15 7.30 88.34 0.64 5.79 16 15 C -0.01 -0.29 4.97 29.85 0.15 -0.14 16 16 C -0.09 -1.52 2.92 -10.07 -0.03 -1.55 16 17 C -0.12 -2.43 5.93 31.67 0.19 -2.24 16 18 C -0.12 -1.79 6.91 31.89 0.22 -1.57 16 19 C -0.12 -1.37 6.83 31.67 0.22 -1.15 16 20 C -0.11 -1.32 6.46 31.32 0.20 -1.12 16 21 O -0.23 -8.67 10.87 -3.59 -0.04 -8.71 16 22 H 0.27 15.16 8.31 -92.71 -0.77 14.38 16 23 H -0.01 -0.50 8.14 -2.38 -0.02 -0.51 16 24 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 26 H 0.11 4.32 8.14 -2.39 -0.02 4.30 16 27 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.12 2.13 8.00 -2.39 -0.02 2.11 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 1.44 7.76 -2.38 -0.02 1.42 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.78 7.67 -2.38 -0.02 0.76 16 Total: -1.00 -68.86 311.00 2.55 -66.30 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.04 Total: 5.40 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 3.29 Total: -21.20 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -3.76 Total: -86.94 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.04 Total: -8.71 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -68.86 2.55 -66.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258640427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.940 kcal (2) G-P(sol) polarization free energy of solvation -68.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds