Wall clock time and date at job start Sun Mar 29 2020 23:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46942 * 220.07742 * 3 2 1 5 5 C 1.34773 * 120.00081 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99812 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00243 * 180.02562 * 5 4 3 8 8 C 1.53001 * 109.47105 * 179.97438 * 7 5 4 9 9 N 1.46906 * 109.46923 * 179.97438 * 8 7 5 10 10 C 1.46894 * 110.99880 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47155 * 185.38213 * 10 9 8 12 12 C 1.50708 * 115.54730 * 294.80053 * 11 10 9 13 13 H 1.07994 * 120.00501 * 95.20134 * 12 11 10 14 14 C 1.37881 * 119.99823 * 274.92856 * 12 11 10 15 15 N 1.31521 * 119.99926 * 355.42157 * 14 12 11 16 16 Si 1.86801 * 120.00038 * 175.41588 * 14 12 11 17 17 H 1.48495 * 109.46929 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46745 * 120.00135 * 16 14 12 19 19 H 1.48498 * 109.47103 * 239.99813 * 16 14 12 20 20 C 1.52996 * 117.50305 * 80.46470 * 11 10 9 21 21 C 1.52994 * 117.50444 * 149.12972 * 11 10 9 22 22 H 4.40639 * 5.51409 * 179.97438 * 4 1 2 23 23 H 1.08996 * 109.47090 * 100.08086 * 3 2 1 24 24 H 1.09001 * 109.47066 * 340.07374 * 3 2 1 25 25 H 0.96998 * 119.99791 * 0.02562 * 4 3 2 26 26 H 1.08998 * 109.47082 * 59.99247 * 7 5 4 27 27 H 1.09001 * 109.46634 * 299.99347 * 7 5 4 28 28 H 1.08996 * 109.47149 * 60.00031 * 8 7 5 29 29 H 1.09001 * 109.47006 * 299.99321 * 8 7 5 30 30 H 1.00901 * 110.99671 * 303.95463 * 9 8 7 31 31 H 1.08995 * 109.47366 * 65.38019 * 10 9 8 32 32 H 1.09006 * 109.46837 * 305.37455 * 10 9 8 33 33 H 0.96995 * 119.99832 * 185.00406 * 15 14 12 34 34 H 1.08999 * 117.50032 * 215.00249 * 20 11 10 35 35 H 1.09002 * 117.49839 * 0.02981 * 20 11 10 36 36 H 1.09004 * 117.49798 * 359.97366 * 21 11 10 37 37 H 1.09005 * 117.50278 * 144.97026 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0578 0.8893 5 6 4.4588 1.2472 1.0475 6 8 5.2472 0.5422 0.4540 7 6 4.9606 2.3342 1.9627 8 6 6.4906 2.3350 1.9626 9 7 6.9798 3.3950 2.8543 10 6 8.4482 3.4262 2.8790 11 6 8.9193 4.4482 3.9155 12 6 8.5727 5.8841 3.6166 13 1 7.6836 6.3250 4.0426 14 6 9.3937 6.6366 2.8037 15 7 10.5247 6.1308 2.3623 16 14 8.8996 8.3745 2.3292 17 1 7.5925 8.7048 2.9517 18 1 9.9307 9.3302 2.8072 19 1 8.7831 8.4700 0.8518 20 6 8.9274 4.0142 5.3826 21 6 10.2473 4.1749 4.6243 22 1 -1.0501 -0.0001 -0.0004 23 1 3.0092 0.1807 -1.0118 24 1 3.0098 -0.9653 0.3502 25 1 2.5032 1.6214 1.3642 26 1 4.5977 2.1536 2.9745 27 1 4.5965 3.3003 1.6131 28 1 6.8538 2.5154 0.9509 29 1 6.8545 1.3689 2.3124 30 1 6.6038 4.2929 2.5888 31 1 8.8223 3.7080 1.8948 32 1 8.8281 2.4392 3.1432 33 1 11.1363 6.6834 1.8511 34 1 8.6822 4.7672 6.1316 35 1 8.5976 3.0003 5.6094 36 1 10.7853 3.2667 4.3524 37 1 10.8707 5.0336 4.8740 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491647136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:21 Heat of formation + Delta-G solvation = 35.891673 kcal Electronic energy + Delta-G solvation = -17324.152933 eV Core-core repulsion = 14489.573392 eV Total energy + Delta-G solvation = -2834.579540 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.81024 -36.96343 -35.75728 -34.61234 -32.88265 -31.87181 -30.48568 -27.39552 -25.63021 -24.32177 -21.94699 -20.84683 -20.48817 -19.12304 -18.75084 -16.95158 -16.24961 -16.01202 -15.81540 -14.99945 -14.59691 -14.29538 -14.09917 -13.76559 -13.57451 -13.07211 -12.71524 -12.37679 -11.99242 -11.36245 -11.20424 -11.02938 -10.97677 -10.92450 -10.84221 -10.72834 -10.40433 -10.04571 -9.87754 -9.30611 -9.28279 -8.79872 -8.36338 -8.01611 -7.49632 -5.98562 -4.06227 2.06757 2.37245 2.60067 3.27979 3.30014 3.37072 3.40219 3.88821 4.41570 4.65361 5.02268 5.17743 5.21839 5.28594 5.30920 5.45904 5.48235 5.72702 5.77497 6.10743 6.15551 6.28267 6.36217 6.54241 6.63794 6.88534 6.90617 6.97370 7.10593 7.26080 7.28891 7.55324 7.65461 7.91182 7.98652 8.10824 8.28326 8.53851 8.97882 9.59486 11.08612 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.003827 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.706236 B = 7314.133384 C = 7863.616081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.207 4.207 3 C 0.229 3.771 4 N -0.735 5.735 5 C 0.518 3.482 6 O -0.537 6.537 7 C -0.136 4.136 8 C 0.073 3.927 9 N -0.683 5.683 10 C 0.107 3.893 11 C 0.046 3.954 12 C -0.492 4.492 13 H 0.060 0.940 14 C 0.068 3.932 15 N -0.879 5.879 16 Si 0.887 3.113 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.201 4.201 21 C -0.156 4.156 22 H 0.222 0.778 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.404 0.596 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.345 0.655 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.258 0.742 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.252 -9.027 -2.976 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.207 4.207 3 C 0.106 3.894 4 N -0.389 5.389 5 C 0.306 3.694 6 O -0.413 6.413 7 C -0.176 4.176 8 C -0.057 4.057 9 N -0.314 5.314 10 C -0.022 4.022 11 C 0.045 3.955 12 C -0.530 4.530 13 H 0.079 0.921 14 C -0.135 4.135 15 N -0.516 5.516 16 Si 0.715 3.285 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.238 4.238 21 C -0.194 4.194 22 H 0.239 0.761 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.239 0.761 26 H 0.121 0.879 27 H 0.112 0.888 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.164 0.836 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.544 -9.910 -3.024 18.681 hybrid contribution -0.494 1.600 -0.991 1.946 sum -16.038 -8.309 -4.015 18.504 Atomic orbital electron populations 1.25031 0.95951 0.98832 0.99440 1.22987 0.94322 1.01879 1.01554 1.18063 0.82973 0.92557 0.95804 1.46061 1.07672 1.36671 1.48506 1.20940 0.81282 0.85144 0.82071 1.90719 1.55072 1.47598 1.47862 1.21636 0.98750 0.97306 0.99905 1.21612 0.91252 0.97268 0.95616 1.60458 1.10124 1.08163 1.52650 1.21434 0.85138 0.96739 0.98879 1.18752 0.95687 0.93698 0.87342 1.20516 1.09282 0.94433 1.28762 0.92143 1.25029 0.95102 0.97810 0.95547 1.70023 1.09303 1.35648 1.36667 0.86623 0.78731 0.84946 0.78230 1.19663 1.21136 1.21120 1.22869 1.03596 0.99296 0.98081 1.22500 0.90964 1.00141 1.05832 0.76146 0.89110 0.89086 0.76119 0.87907 0.88817 0.95217 0.91086 0.83639 0.95032 0.94167 0.93187 0.90972 0.91769 0.92337 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 19.25 29.55 0.57 -0.62 16 2 C -0.21 -1.74 13.46 -37.12 -0.50 -2.24 16 3 C 0.23 2.09 6.15 -6.83 -0.04 2.05 16 4 N -0.74 -7.10 5.54 -63.16 -0.35 -7.45 16 5 C 0.52 6.68 7.83 -10.99 -0.09 6.59 16 6 O -0.54 -9.00 15.98 5.56 0.09 -8.91 16 7 C -0.14 -1.69 5.96 -27.88 -0.17 -1.85 16 8 C 0.07 1.21 4.97 -3.82 -0.02 1.19 16 9 N -0.68 -13.19 6.47 -113.78 -0.74 -13.93 16 10 C 0.11 2.42 5.54 -3.83 -0.02 2.40 16 11 C 0.05 1.13 1.65 -155.66 -0.26 0.88 16 12 C -0.49 -13.14 8.33 -34.43 -0.29 -13.43 16 13 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 14 C 0.07 1.84 5.43 -17.82 -0.10 1.74 16 15 N -0.88 -24.90 12.65 55.43 0.70 -24.20 16 16 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 20 C -0.20 -4.55 9.96 -26.70 -0.27 -4.82 16 21 C -0.16 -3.79 9.14 -26.70 -0.24 -4.03 16 22 H 0.22 0.72 7.80 -54.08 -0.42 0.29 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.40 2.97 8.45 -40.82 -0.34 2.63 16 26 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.35 6.77 8.30 -39.29 -0.33 6.44 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 34 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 327.41 15.07 4.93 4.93 Total: -1.00 -30.97 327.41 -7.50 -38.47 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.70 Total: 7.44 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.42 Total: -12.13 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.38 Total: -45.58 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.97 -7.50 -38.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491647136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.365 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds