Wall clock time and date at job start Sun Mar 29 2020 23:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46942 * 220.07742 * 3 2 1 5 5 C 1.34773 * 120.00081 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99812 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00243 * 180.02562 * 5 4 3 8 8 C 1.53001 * 109.47105 * 179.97438 * 7 5 4 9 9 N 1.46906 * 109.46923 * 179.97438 * 8 7 5 10 10 C 1.46894 * 110.99880 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47155 * 185.38213 * 10 9 8 12 12 C 1.50708 * 115.54730 * 294.80053 * 11 10 9 13 13 H 1.07994 * 120.00501 * 95.20134 * 12 11 10 14 14 C 1.37881 * 119.99823 * 274.92856 * 12 11 10 15 15 N 1.31521 * 119.99926 * 355.42157 * 14 12 11 16 16 Si 1.86801 * 120.00038 * 175.41588 * 14 12 11 17 17 H 1.48495 * 109.46929 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46745 * 120.00135 * 16 14 12 19 19 H 1.48498 * 109.47103 * 239.99813 * 16 14 12 20 20 C 1.52996 * 117.50305 * 80.46470 * 11 10 9 21 21 C 1.52994 * 117.50444 * 149.12972 * 11 10 9 22 22 H 4.40639 * 5.51409 * 179.97438 * 4 1 2 23 23 H 1.08996 * 109.47090 * 100.08086 * 3 2 1 24 24 H 1.09001 * 109.47066 * 340.07374 * 3 2 1 25 25 H 0.96998 * 119.99791 * 0.02562 * 4 3 2 26 26 H 1.08998 * 109.47082 * 59.99247 * 7 5 4 27 27 H 1.09001 * 109.46634 * 299.99347 * 7 5 4 28 28 H 1.08996 * 109.47149 * 60.00031 * 8 7 5 29 29 H 1.09001 * 109.47006 * 299.99321 * 8 7 5 30 30 H 1.00901 * 110.99671 * 303.95463 * 9 8 7 31 31 H 1.08995 * 109.47366 * 65.38019 * 10 9 8 32 32 H 1.09006 * 109.46837 * 305.37455 * 10 9 8 33 33 H 0.96995 * 119.99832 * 185.00406 * 15 14 12 34 34 H 1.08999 * 117.50032 * 215.00249 * 20 11 10 35 35 H 1.09002 * 117.49839 * 0.02981 * 20 11 10 36 36 H 1.09004 * 117.49798 * 359.97366 * 21 11 10 37 37 H 1.09005 * 117.50278 * 144.97026 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0578 0.8893 5 6 4.4588 1.2472 1.0475 6 8 5.2472 0.5422 0.4540 7 6 4.9606 2.3342 1.9627 8 6 6.4906 2.3350 1.9626 9 7 6.9798 3.3950 2.8543 10 6 8.4482 3.4262 2.8790 11 6 8.9193 4.4482 3.9155 12 6 8.5727 5.8841 3.6166 13 1 7.6836 6.3250 4.0426 14 6 9.3937 6.6366 2.8037 15 7 10.5247 6.1308 2.3623 16 14 8.8996 8.3745 2.3292 17 1 7.5925 8.7048 2.9517 18 1 9.9307 9.3302 2.8072 19 1 8.7831 8.4700 0.8518 20 6 8.9274 4.0142 5.3826 21 6 10.2473 4.1749 4.6243 22 1 -1.0501 -0.0001 -0.0004 23 1 3.0092 0.1807 -1.0118 24 1 3.0098 -0.9653 0.3502 25 1 2.5032 1.6214 1.3642 26 1 4.5977 2.1536 2.9745 27 1 4.5965 3.3003 1.6131 28 1 6.8538 2.5154 0.9509 29 1 6.8545 1.3689 2.3124 30 1 6.6038 4.2929 2.5888 31 1 8.8223 3.7080 1.8948 32 1 8.8281 2.4392 3.1432 33 1 11.1363 6.6834 1.8511 34 1 8.6822 4.7672 6.1316 35 1 8.5976 3.0003 5.6094 36 1 10.7853 3.2667 4.3524 37 1 10.8707 5.0336 4.8740 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491647136.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:21 Heat of formation + Delta-G solvation = 14.524566 kcal Electronic energy + Delta-G solvation = -17325.079480 eV Core-core repulsion = 14489.573392 eV Total energy + Delta-G solvation = -2835.506088 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84164 -38.76653 -36.68889 -36.08549 -33.93277 -33.60951 -31.73600 -28.38371 -27.54515 -25.91053 -23.34055 -22.70351 -21.53208 -20.90846 -19.53715 -17.98953 -17.80016 -17.16204 -16.98556 -16.59061 -16.24445 -15.71666 -15.43506 -15.14404 -14.57237 -14.34852 -14.13373 -13.97640 -13.44932 -13.22047 -12.90484 -12.84426 -12.48519 -12.24905 -12.12150 -11.93152 -11.82974 -11.48105 -11.22051 -10.90441 -10.79382 -10.35732 -10.15947 -9.90821 -9.16667 -8.04943 -6.18099 1.41323 1.42322 1.45733 1.56234 1.57164 1.82501 2.45384 2.48985 3.22377 3.33052 3.36219 3.74494 3.88209 4.10360 4.28698 4.38966 4.48200 4.54895 4.67458 4.70823 4.74368 4.93306 4.95514 4.99444 5.06045 5.09931 5.12645 5.30446 5.33613 5.66993 5.73166 5.84124 6.27830 6.46261 6.50184 6.56662 6.66079 6.92580 7.16922 7.50617 9.02039 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.003827 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.706236 B = 7314.133384 C = 7863.616081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.249 4.249 3 C 0.229 3.771 4 N -0.718 5.718 5 C 0.520 3.480 6 O -0.583 6.583 7 C -0.124 4.124 8 C 0.076 3.924 9 N -0.673 5.673 10 C 0.119 3.881 11 C 0.023 3.977 12 C -0.500 4.500 13 H 0.059 0.941 14 C 0.020 3.980 15 N -0.912 5.912 16 Si 0.950 3.050 17 H -0.261 1.261 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.176 4.176 21 C -0.165 4.165 22 H 0.255 0.745 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.418 0.582 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.010 0.990 29 H 0.062 0.938 30 H 0.345 0.655 31 H -0.002 1.002 32 H 0.045 0.955 33 H 0.257 0.743 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.974 -8.830 -2.494 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.250 4.250 3 C 0.107 3.893 4 N -0.371 5.371 5 C 0.308 3.692 6 O -0.462 6.462 7 C -0.164 4.164 8 C -0.054 4.054 9 N -0.304 5.304 10 C -0.011 4.011 11 C 0.023 3.977 12 C -0.538 4.538 13 H 0.077 0.923 14 C -0.180 4.180 15 N -0.550 5.550 16 Si 0.777 3.223 17 H -0.185 1.185 18 H -0.213 1.213 19 H -0.211 1.211 20 C -0.213 4.213 21 C -0.204 4.204 22 H 0.271 0.729 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.255 0.745 26 H 0.142 0.858 27 H 0.132 0.868 28 H 0.029 0.971 29 H 0.080 0.920 30 H 0.163 0.837 31 H 0.016 0.984 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.329 -9.705 -2.520 20.893 hybrid contribution 0.274 1.491 -1.128 1.890 sum -18.055 -8.214 -3.648 20.168 Atomic orbital electron populations 1.25872 0.96676 0.96575 0.97191 1.22969 0.94440 1.03945 1.03613 1.17984 0.84033 0.92056 0.95260 1.45901 1.06824 1.36511 1.47867 1.20953 0.81934 0.84695 0.81621 1.90708 1.56417 1.49317 1.49802 1.21515 0.95425 0.98297 1.01197 1.21579 0.94296 0.95738 0.93811 1.60430 1.07911 1.08727 1.53327 1.21179 0.87183 0.96196 0.96499 1.18906 0.96164 0.93595 0.89073 1.20768 1.09027 0.95532 1.28477 0.92332 1.25740 0.95051 1.01572 0.95608 1.70145 1.10321 1.37006 1.37541 0.85621 0.78644 0.80394 0.77675 1.18500 1.21256 1.21127 1.22847 1.01413 1.00364 0.96657 1.22409 0.91258 0.99604 1.07096 0.72876 0.89726 0.89500 0.74505 0.85791 0.86761 0.97126 0.91971 0.83720 0.98382 0.93689 0.93390 0.90765 0.89656 0.91570 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 19.25 74.32 1.43 -0.12 16 2 C -0.25 -3.76 13.46 31.13 0.42 -3.34 16 3 C 0.23 4.05 6.15 84.57 0.52 4.57 16 4 N -0.72 -12.82 5.54 -472.13 -2.61 -15.44 16 5 C 0.52 12.90 7.83 87.66 0.69 13.59 16 6 O -0.58 -19.72 15.98 -3.02 -0.05 -19.77 16 7 C -0.12 -2.86 5.96 29.85 0.18 -2.69 16 8 C 0.08 2.49 4.97 86.30 0.43 2.92 16 9 N -0.67 -25.48 6.47 -513.89 -3.33 -28.80 16 10 C 0.12 5.42 5.54 86.30 0.48 5.90 16 11 C 0.02 1.14 1.65 -52.93 -0.09 1.06 16 12 C -0.50 -26.59 8.33 25.60 0.21 -26.38 16 13 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 14 C 0.02 1.08 5.43 84.65 0.46 1.54 16 15 N -0.91 -52.47 12.65 21.45 0.27 -52.20 16 16 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 17 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 20 C -0.18 -7.70 9.96 30.62 0.30 -7.40 16 21 C -0.17 -8.05 9.14 30.62 0.28 -7.77 16 22 H 0.26 0.58 7.80 -4.41 -0.03 0.55 16 23 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.42 5.16 8.45 -92.71 -0.78 4.37 16 26 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.01 0.39 8.10 -2.39 -0.02 0.37 16 29 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 30 H 0.34 13.18 8.30 -89.69 -0.74 12.44 16 31 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.04 1.97 8.08 -2.38 -0.02 1.95 16 33 H 0.26 14.20 8.32 -92.71 -0.77 13.43 16 34 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.09 3.37 8.14 -2.39 -0.02 3.36 16 36 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.06 3.07 8.14 -2.38 -0.02 3.05 16 Total: -1.00 -66.88 327.41 1.15 -65.73 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.47 Total: 23.85 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 5.31 Total: -18.11 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -5.67 Total: -96.43 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.05 Total: -19.77 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -66.88 1.15 -65.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491647136.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.253 kcal (2) G-P(sol) polarization free energy of solvation -66.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds