Wall clock time and date at job start Sun Mar 29 2020 23:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47284 * 2 1 4 4 O 1.42895 * 109.47309 * 120.00394 * 2 1 3 5 5 C 1.42902 * 114.00181 * 150.00235 * 4 2 1 6 6 C 1.53000 * 109.47075 * 179.97438 * 5 4 2 7 7 N 1.46507 * 109.47174 * 65.00012 * 6 5 4 8 8 C 1.39717 * 119.99896 * 180.02562 * 7 6 5 9 9 C 1.39341 * 120.36688 * 359.71505 * 8 7 6 10 10 N 1.31981 * 121.20798 * 179.72620 * 9 8 7 11 11 C 1.31493 * 122.06002 * 0.59074 * 10 9 8 12 12 C 1.40762 * 120.56234 * 359.67986 * 11 10 9 13 13 C 1.41426 * 120.62451 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99726 * 335.80480 * 13 12 11 15 15 C 1.39929 * 120.00339 * 155.80356 * 13 12 11 16 16 N 1.30822 * 119.99878 * 342.94579 * 15 13 12 17 17 Si 1.86798 * 120.00145 * 162.94378 * 15 13 12 18 18 H 1.48495 * 109.47141 * 60.00034 * 17 15 13 19 19 H 1.48493 * 109.47261 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47107 * 300.00345 * 17 15 13 21 21 C 1.38656 * 120.36415 * 179.97438 * 8 7 6 22 22 H 1.08997 * 109.46861 * 299.99718 * 1 2 3 23 23 H 1.08997 * 109.47115 * 59.99816 * 1 2 3 24 24 H 1.09002 * 109.47205 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46801 * 240.00303 * 2 1 3 26 26 H 1.08997 * 109.46941 * 60.00331 * 3 2 1 27 27 H 1.08996 * 109.47518 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46944 * 300.00503 * 3 2 1 29 29 H 1.08990 * 109.47381 * 59.99355 * 5 4 2 30 30 H 1.09001 * 109.46935 * 299.99587 * 5 4 2 31 31 H 1.08990 * 109.47387 * 304.99904 * 6 5 4 32 32 H 1.09002 * 109.47079 * 184.99548 * 6 5 4 33 33 H 0.96998 * 119.99870 * 359.97438 * 7 6 5 34 34 H 1.08005 * 119.39078 * 0.02562 * 9 8 7 35 35 H 1.07992 * 119.72219 * 179.69980 * 11 10 9 36 36 H 0.97004 * 120.00162 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.92805 * 359.94877 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2661 -1.3245 0.9885 6 6 3.6761 -2.0081 2.2944 7 7 2.7264 -3.0800 2.6036 8 6 2.8946 -3.8512 3.7565 9 6 3.9661 -3.6114 4.6143 10 7 4.1379 -4.3261 5.7105 11 6 3.3210 -5.3015 6.0428 12 6 2.2149 -5.6166 5.2313 13 6 1.3358 -6.6657 5.5872 14 1 1.6809 -7.4668 6.2242 15 6 0.0188 -6.6659 5.1143 16 7 -0.5041 -5.5667 4.6348 17 14 -0.9925 -8.2355 5.1674 18 1 -1.1162 -8.6973 6.5733 19 1 -2.3441 -7.9726 4.6115 20 1 -0.3208 -9.2847 4.3591 21 6 2.0001 -4.8671 4.0568 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.6768 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 4.0200 -0.5874 0.7123 30 1 3.1810 -2.0707 0.1985 31 1 3.6751 -1.2773 3.1030 32 1 4.6759 -2.4287 2.1860 33 1 1.9805 -3.2537 2.0084 34 1 4.6663 -2.8229 4.3803 35 1 3.5001 -5.8654 6.9462 36 1 -1.4170 -5.5669 4.3066 37 1 1.1621 -5.0783 3.4090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161788615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:33 Heat of formation + Delta-G solvation = -32.759658 kcal Electronic energy + Delta-G solvation = -17811.465570 eV Core-core repulsion = 14973.909085 eV Total energy + Delta-G solvation = -2837.556485 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.69943 -38.13450 -35.28064 -33.87564 -32.72859 -30.34863 -29.69878 -27.41360 -26.68061 -25.52140 -22.67592 -21.43621 -21.39002 -20.43565 -17.30711 -16.88908 -16.02388 -15.69444 -15.26013 -15.02319 -14.56841 -14.47633 -13.67682 -13.58012 -12.97014 -12.81858 -12.62930 -12.45830 -12.29501 -11.97395 -11.61678 -11.46332 -11.40705 -11.20139 -11.06020 -10.84967 -10.75746 -10.51508 -9.86417 -9.59672 -9.40930 -9.24866 -7.98800 -7.68191 -6.77601 -6.29231 -4.40505 2.81478 3.06432 3.09500 3.19711 3.31272 3.61971 3.92625 4.28298 4.72070 4.73133 4.89293 5.03941 5.16870 5.28221 5.35062 5.44481 5.54525 5.65034 5.71735 5.82235 5.96435 6.02155 6.10879 6.12076 6.21504 6.64041 6.74298 6.96649 7.16043 7.22918 7.25359 7.65730 7.79891 8.03471 8.27594 8.56202 8.69329 8.83064 8.95161 9.82550 10.17532 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.005189 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.126655 B = 5394.357593 C = 6510.904330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.174 4.174 4 O -0.373 6.373 5 C 0.053 3.947 6 C 0.137 3.863 7 N -0.749 5.749 8 C 0.176 3.824 9 C -0.099 4.099 10 N -0.446 5.446 11 C -0.053 4.053 12 C 0.097 3.903 13 C -0.454 4.454 14 H 0.081 0.919 15 C 0.077 3.923 16 N -0.788 5.788 17 Si 0.909 3.091 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.264 1.264 21 C -0.210 4.210 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.393 0.607 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.281 0.719 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 8.432 -11.152 14.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 C -0.232 4.232 4 O -0.293 6.293 5 C -0.024 4.024 6 C 0.012 3.988 7 N -0.384 5.384 8 C 0.075 3.925 9 C -0.258 4.258 10 N -0.153 5.153 11 C -0.218 4.218 12 C 0.092 3.908 13 C -0.484 4.484 14 H 0.099 0.901 15 C -0.142 4.142 16 N -0.413 5.413 17 Si 0.733 3.267 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.188 1.188 21 C -0.240 4.240 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.226 0.774 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.092 0.908 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.375 8.892 -10.539 13.858 hybrid contribution -1.462 -0.771 -1.062 1.965 sum -0.087 8.121 -11.602 14.162 Atomic orbital electron populations 1.21856 0.93658 1.02962 1.02285 1.22062 0.95132 0.92304 0.88353 1.22299 1.01381 0.97048 1.02461 1.88062 1.36464 1.69774 1.34977 1.22799 0.86124 0.95360 0.98124 1.21114 0.92984 0.89718 0.94990 1.44245 1.31472 1.36652 1.25998 1.18688 0.95178 0.91708 0.86959 1.21217 1.01292 1.06714 0.96623 1.66809 1.28125 1.04905 1.15509 1.22312 0.97815 1.00241 1.01406 1.18255 0.91582 0.91304 0.89706 1.19512 0.94809 1.07122 1.26973 0.90071 1.25935 0.98404 0.97051 0.92798 1.69836 1.14896 1.26898 1.29649 0.86355 0.78358 0.82189 0.79753 1.18884 1.20392 1.18809 1.21069 1.02064 1.00625 1.00278 0.91708 0.91572 0.91798 0.92523 0.91711 0.92614 0.91915 0.92528 0.92989 0.92284 0.91737 0.77360 0.86869 0.86007 0.90846 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.56 37.16 0.36 -1.19 16 2 C 0.08 0.86 3.34 -26.73 -0.09 0.77 16 3 C -0.17 -1.60 9.53 37.16 0.35 -1.25 16 4 O -0.37 -5.28 9.93 -35.23 -0.35 -5.63 16 5 C 0.05 0.66 5.88 37.16 0.22 0.88 16 6 C 0.14 2.14 5.31 -4.04 -0.02 2.11 16 7 N -0.75 -14.62 5.68 -58.57 -0.33 -14.95 16 8 C 0.18 4.23 6.67 -83.70 -0.56 3.68 16 9 C -0.10 -2.42 10.49 -17.08 -0.18 -2.60 16 10 N -0.45 -11.67 10.33 -12.37 -0.13 -11.79 16 11 C -0.05 -1.41 10.97 -16.74 -0.18 -1.60 16 12 C 0.10 2.65 5.59 -106.70 -0.60 2.06 16 13 C -0.45 -12.11 9.08 -37.74 -0.34 -12.45 16 14 H 0.08 2.05 7.90 -52.48 -0.41 1.64 16 15 C 0.08 1.92 5.18 -17.35 -0.09 1.83 16 16 N -0.79 -20.44 10.93 55.55 0.61 -19.84 16 17 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 18 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 19 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 C -0.21 -5.56 8.67 -38.39 -0.33 -5.89 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.54 7.79 -51.92 -0.40 0.14 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.49 7.87 -51.93 -0.41 0.08 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 30 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.06 0.98 7.97 -51.93 -0.41 0.56 16 32 H 0.06 0.94 7.95 -51.93 -0.41 0.53 16 33 H 0.39 7.44 8.49 -40.82 -0.35 7.09 16 34 H 0.11 2.47 6.73 -52.48 -0.35 2.11 16 35 H 0.12 3.01 8.06 -52.49 -0.42 2.58 16 36 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 37 H 0.12 3.35 6.22 -52.48 -0.33 3.02 16 LS Contribution 311.98 15.07 4.70 4.70 Total: -1.00 -29.69 311.98 -7.58 -37.27 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.58 Total: 10.34 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.46 Total: -13.65 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.15 Total: -46.58 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.35 Total: -5.63 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.69 -7.58 -37.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161788615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.507 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds