Wall clock time and date at job start Sun Mar 29 2020 23:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47284 * 2 1 4 4 O 1.42895 * 109.47309 * 120.00394 * 2 1 3 5 5 C 1.42902 * 114.00181 * 150.00235 * 4 2 1 6 6 C 1.53000 * 109.47075 * 179.97438 * 5 4 2 7 7 N 1.46507 * 109.47174 * 65.00012 * 6 5 4 8 8 C 1.39717 * 119.99896 * 180.02562 * 7 6 5 9 9 C 1.39341 * 120.36688 * 359.71505 * 8 7 6 10 10 N 1.31981 * 121.20798 * 179.72620 * 9 8 7 11 11 C 1.31493 * 122.06002 * 0.59074 * 10 9 8 12 12 C 1.40762 * 120.56234 * 359.67986 * 11 10 9 13 13 C 1.41426 * 120.62451 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99726 * 335.80480 * 13 12 11 15 15 C 1.39929 * 120.00339 * 155.80356 * 13 12 11 16 16 N 1.30822 * 119.99878 * 342.94579 * 15 13 12 17 17 Si 1.86798 * 120.00145 * 162.94378 * 15 13 12 18 18 H 1.48495 * 109.47141 * 60.00034 * 17 15 13 19 19 H 1.48493 * 109.47261 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47107 * 300.00345 * 17 15 13 21 21 C 1.38656 * 120.36415 * 179.97438 * 8 7 6 22 22 H 1.08997 * 109.46861 * 299.99718 * 1 2 3 23 23 H 1.08997 * 109.47115 * 59.99816 * 1 2 3 24 24 H 1.09002 * 109.47205 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46801 * 240.00303 * 2 1 3 26 26 H 1.08997 * 109.46941 * 60.00331 * 3 2 1 27 27 H 1.08996 * 109.47518 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46944 * 300.00503 * 3 2 1 29 29 H 1.08990 * 109.47381 * 59.99355 * 5 4 2 30 30 H 1.09001 * 109.46935 * 299.99587 * 5 4 2 31 31 H 1.08990 * 109.47387 * 304.99904 * 6 5 4 32 32 H 1.09002 * 109.47079 * 184.99548 * 6 5 4 33 33 H 0.96998 * 119.99870 * 359.97438 * 7 6 5 34 34 H 1.08005 * 119.39078 * 0.02562 * 9 8 7 35 35 H 1.07992 * 119.72219 * 179.69980 * 11 10 9 36 36 H 0.97004 * 120.00162 * 179.97438 * 16 15 13 37 37 H 1.08004 * 120.92805 * 359.94877 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2661 -1.3245 0.9885 6 6 3.6761 -2.0081 2.2944 7 7 2.7264 -3.0800 2.6036 8 6 2.8946 -3.8512 3.7565 9 6 3.9661 -3.6114 4.6143 10 7 4.1379 -4.3261 5.7105 11 6 3.3210 -5.3015 6.0428 12 6 2.2149 -5.6166 5.2313 13 6 1.3358 -6.6657 5.5872 14 1 1.6809 -7.4668 6.2242 15 6 0.0188 -6.6659 5.1143 16 7 -0.5041 -5.5667 4.6348 17 14 -0.9925 -8.2355 5.1674 18 1 -1.1162 -8.6973 6.5733 19 1 -2.3441 -7.9726 4.6115 20 1 -0.3208 -9.2847 4.3591 21 6 2.0001 -4.8671 4.0568 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.6768 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 4.0200 -0.5874 0.7123 30 1 3.1810 -2.0707 0.1985 31 1 3.6751 -1.2773 3.1030 32 1 4.6759 -2.4287 2.1860 33 1 1.9805 -3.2537 2.0084 34 1 4.6663 -2.8229 4.3803 35 1 3.5001 -5.8654 6.9462 36 1 -1.4170 -5.5669 4.3066 37 1 1.1621 -5.0783 3.4090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161788615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:33 Heat of formation + Delta-G solvation = -51.780087 kcal Electronic energy + Delta-G solvation = -17812.290358 eV Core-core repulsion = 14973.909085 eV Total energy + Delta-G solvation = -2838.381273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31309 -39.41246 -36.82187 -35.79575 -33.75997 -32.24135 -31.24899 -28.42770 -27.98865 -27.47973 -24.22193 -23.17716 -22.25223 -22.20629 -19.16786 -17.92594 -17.73372 -17.21794 -16.87939 -16.56752 -16.04097 -15.63538 -15.10136 -14.97554 -14.63441 -14.06156 -13.96772 -13.54091 -13.34230 -13.32299 -13.18732 -13.10180 -12.99591 -12.64711 -12.37999 -12.18011 -12.11025 -11.77037 -11.57714 -11.16663 -11.10733 -10.51969 -9.99983 -9.69653 -8.67572 -8.08146 -6.43381 0.95542 1.21932 1.40086 1.51813 1.57878 2.21051 2.64649 2.77700 2.82801 3.81522 3.88171 4.08252 4.14546 4.25103 4.28327 4.31004 4.44447 4.60104 4.67583 4.73954 4.83535 4.87472 4.90107 4.94235 4.97799 4.99422 5.19224 5.28172 5.31867 5.33053 5.72349 5.88845 6.01917 6.32974 6.37731 6.74330 6.83621 6.84842 7.08091 7.81866 8.29642 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021531 B = 0.005189 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.126655 B = 5394.357593 C = 6510.904330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.072 3.928 3 C -0.170 4.170 4 O -0.406 6.406 5 C 0.059 3.941 6 C 0.131 3.869 7 N -0.741 5.741 8 C 0.185 3.815 9 C -0.108 4.108 10 N -0.454 5.454 11 C -0.080 4.080 12 C 0.073 3.927 13 C -0.486 4.486 14 H 0.085 0.915 15 C 0.037 3.963 16 N -0.817 5.817 17 Si 0.987 3.013 18 H -0.257 1.257 19 H -0.268 1.268 20 H -0.259 1.259 21 C -0.237 4.237 22 H 0.050 0.950 23 H 0.091 0.909 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.395 0.605 34 H 0.141 0.859 35 H 0.129 0.871 36 H 0.289 0.711 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 8.837 -12.726 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 C -0.227 4.227 4 O -0.326 6.326 5 C -0.017 4.017 6 C 0.007 3.993 7 N -0.373 5.373 8 C 0.081 3.919 9 C -0.268 4.268 10 N -0.162 5.162 11 C -0.244 4.244 12 C 0.068 3.932 13 C -0.516 4.516 14 H 0.103 0.897 15 C -0.179 4.179 16 N -0.442 5.442 17 Si 0.807 3.193 18 H -0.181 1.181 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.268 4.268 22 H 0.069 0.931 23 H 0.110 0.890 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.229 0.771 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.100 0.900 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.233 9.333 -12.134 15.358 hybrid contribution -1.392 -0.764 -0.643 1.713 sum -0.160 8.569 -12.777 15.385 Atomic orbital electron populations 1.21891 0.93725 1.02271 1.02903 1.22291 0.95196 0.93159 0.87856 1.22264 1.01708 0.95910 1.02867 1.88021 1.37215 1.70384 1.36975 1.22775 0.86542 0.96121 0.96304 1.21384 0.92878 0.88509 0.96551 1.44390 1.32073 1.36554 1.24320 1.18736 0.94137 0.91085 0.87979 1.21667 1.01873 1.07052 0.96200 1.66807 1.28169 1.04943 1.16246 1.22443 0.98470 1.01310 1.02178 1.18589 0.92241 0.92032 0.90343 1.19829 0.95948 1.07495 1.28289 0.89720 1.26839 0.98987 1.00447 0.91642 1.69892 1.15686 1.28974 1.29645 0.85181 0.76741 0.77311 0.80058 1.18132 1.19193 1.18338 1.21051 1.02847 1.02369 1.00547 0.93056 0.88998 0.93121 0.90938 0.92962 0.92045 0.89859 0.89531 0.91936 0.93139 0.90142 0.77124 0.84145 0.85302 0.90004 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.56 71.98 0.69 -2.22 16 2 C 0.07 1.41 3.34 30.59 0.10 1.51 16 3 C -0.17 -2.72 9.53 71.98 0.69 -2.03 16 4 O -0.41 -10.84 9.93 -148.98 -1.48 -12.32 16 5 C 0.06 1.33 5.88 71.98 0.42 1.75 16 6 C 0.13 3.83 5.31 86.38 0.46 4.28 16 7 N -0.74 -28.40 5.68 -339.22 -1.93 -30.33 16 8 C 0.19 8.91 6.67 38.25 0.25 9.17 16 9 C -0.11 -5.22 10.49 84.94 0.89 -4.33 16 10 N -0.45 -23.94 10.33 -193.05 -1.99 -25.93 16 11 C -0.08 -4.38 10.97 85.36 0.94 -3.44 16 12 C 0.07 4.13 5.59 -21.21 -0.12 4.01 16 13 C -0.49 -26.51 9.08 23.47 0.21 -26.30 16 14 H 0.08 4.38 7.90 -2.91 -0.02 4.36 16 15 C 0.04 1.87 5.18 85.25 0.44 2.31 16 16 N -0.82 -42.90 10.93 21.82 0.24 -42.66 16 17 Si 0.99 37.80 29.59 68.60 2.03 39.83 16 18 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 19 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 21 C -0.24 -12.88 8.67 23.04 0.20 -12.68 16 22 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.18 7.79 -2.38 -0.02 1.17 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 0.90 7.87 -2.39 -0.02 0.89 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.46 7.87 -2.39 -0.02 1.44 16 30 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 31 H 0.05 1.59 7.97 -2.39 -0.02 1.57 16 32 H 0.08 2.13 7.95 -2.39 -0.02 2.11 16 33 H 0.39 14.82 8.49 -92.71 -0.79 14.03 16 34 H 0.14 5.90 6.73 -2.91 -0.02 5.88 16 35 H 0.13 6.58 8.06 -2.91 -0.02 6.56 16 36 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 37 H 0.11 6.24 6.22 -2.91 -0.02 6.22 16 Total: -1.00 -64.72 311.98 2.31 -62.41 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: 0.27 Total: 36.97 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 5.18 Total: -27.97 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -3.68 Total: -98.92 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -1.48 Total: -12.32 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -64.72 2.31 -62.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161788615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.626 kcal (2) G-P(sol) polarization free energy of solvation -64.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds