Wall clock time and date at job start Sun Mar 29 2020 23:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47426 * 2 1 4 4 H 1.08996 * 109.46751 * 55.42351 * 3 2 1 5 5 C 1.50700 * 109.47244 * 175.42717 * 3 2 1 6 6 H 1.07994 * 119.99777 * 120.00070 * 5 3 2 7 7 C 1.37882 * 119.99716 * 299.99922 * 5 3 2 8 8 N 1.31509 * 120.00011 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99758 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47309 * 59.99823 * 9 7 5 11 11 H 1.48504 * 109.47039 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47164 * 299.99767 * 9 7 5 13 13 N 1.46904 * 109.46942 * 295.42375 * 3 2 1 14 14 C 1.46899 * 110.99811 * 156.01392 * 13 3 2 15 15 H 1.09005 * 109.46990 * 34.61157 * 14 13 3 16 16 C 1.53006 * 109.47393 * 274.60905 * 14 13 3 17 17 O 1.42892 * 109.47128 * 295.29363 * 16 14 13 18 18 C 1.50700 * 109.47411 * 154.60891 * 14 13 3 19 19 C 1.38225 * 119.62541 * 204.73199 * 18 14 13 20 20 C 1.38617 * 119.16208 * 179.75372 * 19 18 14 21 21 C 1.38675 * 118.42535 * 0.50538 * 20 19 18 22 22 C 1.38175 * 119.15729 * 359.73421 * 21 20 19 23 23 N 1.31854 * 119.61304 * 24.99963 * 18 14 13 24 24 H 1.08997 * 109.47187 * 295.53937 * 1 2 3 25 25 H 1.09000 * 109.47554 * 175.53523 * 1 2 3 26 26 H 1.09003 * 109.47100 * 55.53953 * 1 2 3 27 27 H 1.08995 * 109.47121 * 120.00454 * 2 1 3 28 28 H 1.09002 * 109.46804 * 239.99780 * 2 1 3 29 29 H 0.97006 * 120.00234 * 179.97438 * 8 7 5 30 30 H 1.00895 * 111.00334 * 279.97131 * 13 3 2 31 31 H 1.09002 * 109.46416 * 55.29627 * 16 14 13 32 32 H 1.09000 * 109.46797 * 175.28859 * 16 14 13 33 33 H 0.96698 * 113.99998 * 179.97438 * 17 16 14 34 34 H 1.08004 * 120.41056 * 359.97438 * 19 18 14 35 35 H 1.08009 * 120.78903 * 180.21400 * 20 19 18 36 36 H 1.08002 * 120.41972 * 179.70973 * 21 20 19 37 37 H 1.08003 * 119.61896 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6113 1.9793 0.8461 5 6 3.5428 1.4439 0.1133 6 1 4.1426 1.8904 -0.6660 7 6 4.1518 0.8752 1.2118 8 7 3.4214 0.3320 2.1609 9 14 6.0145 0.8777 1.3526 10 1 6.5091 2.2779 1.3529 11 1 6.4162 0.2099 2.6167 12 1 6.5990 0.1465 0.1997 13 7 1.6427 2.1023 -1.2509 14 6 1.5885 3.5606 -1.0826 15 1 2.3689 3.8757 -0.3899 16 6 0.2204 3.9593 -0.5253 17 8 -0.7935 3.6453 -1.4820 18 6 1.8014 4.2286 -2.4166 19 6 2.2964 5.5183 -2.4637 20 6 2.4934 6.1216 -3.6960 21 6 2.1739 5.4059 -4.8400 22 6 1.6784 4.1221 -4.7145 23 7 1.5085 3.5778 -3.5253 24 1 -0.3633 0.4430 0.9272 25 1 -0.3634 -1.0245 -0.0800 26 1 -0.3633 0.5815 -0.8474 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.8498 -0.0684 2.9336 30 1 2.2615 1.8482 -2.0062 31 1 0.0309 3.4119 0.3981 32 1 0.2090 5.0300 -0.3218 33 1 -1.6888 3.8712 -1.1948 34 1 2.5300 6.0479 -1.5518 35 1 2.8821 7.1271 -3.7635 36 1 2.3102 5.8465 -5.8166 37 1 1.4267 3.5581 -5.6005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:30 Heat of formation + Delta-G solvation = -14.459350 kcal Electronic energy + Delta-G solvation = -18754.185974 eV Core-core repulsion = 15917.423050 eV Total energy + Delta-G solvation = -2836.762925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.95613 -37.03848 -35.36534 -33.09678 -32.05422 -31.52105 -30.05015 -27.69125 -25.73890 -23.62336 -23.19145 -22.45428 -20.14067 -19.29837 -17.03114 -16.79775 -16.31441 -15.89082 -15.29388 -14.72919 -14.37425 -13.95306 -13.51164 -13.10349 -12.98493 -12.90288 -12.72401 -12.28184 -11.91662 -11.42500 -11.32938 -11.05185 -10.89539 -10.70509 -10.46162 -10.12416 -9.59768 -9.52343 -9.50573 -9.46449 -8.99863 -8.89996 -8.64436 -8.33744 -7.09817 -5.96291 -4.10650 1.39254 1.58282 3.28386 3.33757 3.36609 4.13616 4.40580 4.62911 4.76403 4.97273 5.06260 5.22138 5.27791 5.33358 5.49911 5.74665 5.79679 5.95259 6.11016 6.19855 6.32782 6.39748 6.44827 6.50623 6.65617 6.85837 6.98252 7.18703 7.33103 7.52904 7.65884 7.82720 8.14335 8.16506 8.24543 8.34806 8.50403 8.78185 9.05689 9.57313 11.02206 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020028 B = 0.007433 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.684292 B = 3766.250870 C = 4586.142155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 C 0.212 3.788 4 H 0.031 0.969 5 C -0.547 4.547 6 H 0.051 0.949 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.659 5.659 14 C 0.139 3.861 15 H 0.075 0.925 16 C 0.096 3.904 17 O -0.547 6.547 18 C 0.154 3.846 19 C -0.177 4.177 20 C -0.080 4.080 21 C -0.191 4.191 22 C 0.097 3.903 23 N -0.444 5.444 24 H 0.031 0.969 25 H 0.021 0.979 26 H 0.058 0.942 27 H 0.088 0.912 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.337 0.663 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.360 0.640 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 10.120 -7.975 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C 0.104 3.896 4 H 0.048 0.952 5 C -0.587 4.587 6 H 0.069 0.931 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.289 5.289 14 C 0.027 3.973 15 H 0.093 0.907 16 C 0.017 3.983 17 O -0.349 6.349 18 C 0.016 3.984 19 C -0.198 4.198 20 C -0.106 4.106 21 C -0.211 4.211 22 C -0.061 4.061 23 N -0.152 5.152 24 H 0.051 0.949 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.106 0.894 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.156 0.844 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.204 0.796 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.924 8.856 -7.958 12.884 hybrid contribution 2.003 1.364 0.472 2.469 sum -2.920 10.220 -7.487 13.001 Atomic orbital electron populations 1.21714 0.98902 0.98408 1.00535 1.21441 0.92235 0.99026 1.01462 1.19233 0.92346 0.91539 0.86476 0.95153 1.21892 0.92951 1.38262 1.05569 0.93087 1.24920 0.97775 0.94979 0.95688 1.69870 1.34872 1.38026 1.09468 0.86753 0.86295 0.78140 0.77358 1.20459 1.21224 1.20310 1.60763 1.56945 1.02359 1.08876 1.20426 0.94900 0.91877 0.90104 0.90744 1.22177 0.88171 0.96257 0.91682 1.86715 1.17074 1.87187 1.43922 1.21422 0.91554 0.90683 0.94787 1.21958 1.02373 0.96723 0.98705 1.21435 0.97087 0.99601 0.92466 1.22046 1.03075 0.96861 0.99122 1.22809 0.94922 0.92591 0.95742 1.67554 1.13096 1.36979 0.97600 0.94950 0.95936 0.92339 0.89405 0.95164 0.92854 0.84436 0.92851 0.95115 0.79580 0.85261 0.85497 0.85565 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.85 37.16 0.37 -2.61 16 2 C -0.10 -2.54 5.45 -26.73 -0.15 -2.69 16 3 C 0.21 5.27 1.79 -68.86 -0.12 5.15 16 4 H 0.03 0.82 7.13 -51.93 -0.37 0.45 16 5 C -0.55 -14.80 8.22 -34.44 -0.28 -15.08 16 6 H 0.05 1.39 7.76 -52.49 -0.41 0.98 16 7 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -24.90 11.30 55.43 0.63 -24.27 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.66 -14.52 5.10 -102.17 -0.52 -15.05 16 14 C 0.14 2.68 2.47 -68.86 -0.17 2.51 16 15 H 0.08 1.52 7.56 -51.93 -0.39 1.13 16 16 C 0.10 1.64 6.77 37.16 0.25 1.89 16 17 O -0.55 -9.28 13.09 -35.23 -0.46 -9.74 16 18 C 0.15 2.74 5.23 -82.59 -0.43 2.31 16 19 C -0.18 -2.63 9.77 -39.45 -0.39 -3.02 16 20 C -0.08 -1.01 10.17 -39.28 -0.40 -1.41 16 21 C -0.19 -2.36 10.11 -39.44 -0.40 -2.76 16 22 C 0.10 1.42 11.18 -17.55 -0.20 1.22 16 23 N -0.44 -8.05 9.28 -9.47 -0.09 -8.14 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 1.27 7.62 -51.93 -0.40 0.87 16 27 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.34 7.85 7.55 -39.29 -0.30 7.56 16 31 H 0.05 0.96 7.40 -51.93 -0.38 0.57 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.36 4.35 9.12 45.56 0.42 4.77 16 34 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.15 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 309.11 15.07 4.66 4.66 Total: -1.00 -30.59 309.11 -7.47 -38.06 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -4.66 Total: 11.02 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -2.01 Total: -12.71 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.02 Total: -47.46 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.46 Total: -9.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.59 -7.47 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.602 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds