Wall clock time and date at job start Sun Mar 29 2020 23:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47426 * 2 1 4 4 H 1.08996 * 109.46751 * 55.42351 * 3 2 1 5 5 C 1.50700 * 109.47244 * 175.42717 * 3 2 1 6 6 H 1.07994 * 119.99777 * 120.00070 * 5 3 2 7 7 C 1.37882 * 119.99716 * 299.99922 * 5 3 2 8 8 N 1.31509 * 120.00011 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 119.99758 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47309 * 59.99823 * 9 7 5 11 11 H 1.48504 * 109.47039 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47164 * 299.99767 * 9 7 5 13 13 N 1.46904 * 109.46942 * 295.42375 * 3 2 1 14 14 C 1.46899 * 110.99811 * 156.01392 * 13 3 2 15 15 H 1.09005 * 109.46990 * 34.61157 * 14 13 3 16 16 C 1.53006 * 109.47393 * 274.60905 * 14 13 3 17 17 O 1.42892 * 109.47128 * 295.29363 * 16 14 13 18 18 C 1.50700 * 109.47411 * 154.60891 * 14 13 3 19 19 C 1.38225 * 119.62541 * 204.73199 * 18 14 13 20 20 C 1.38617 * 119.16208 * 179.75372 * 19 18 14 21 21 C 1.38675 * 118.42535 * 0.50538 * 20 19 18 22 22 C 1.38175 * 119.15729 * 359.73421 * 21 20 19 23 23 N 1.31854 * 119.61304 * 24.99963 * 18 14 13 24 24 H 1.08997 * 109.47187 * 295.53937 * 1 2 3 25 25 H 1.09000 * 109.47554 * 175.53523 * 1 2 3 26 26 H 1.09003 * 109.47100 * 55.53953 * 1 2 3 27 27 H 1.08995 * 109.47121 * 120.00454 * 2 1 3 28 28 H 1.09002 * 109.46804 * 239.99780 * 2 1 3 29 29 H 0.97006 * 120.00234 * 179.97438 * 8 7 5 30 30 H 1.00895 * 111.00334 * 279.97131 * 13 3 2 31 31 H 1.09002 * 109.46416 * 55.29627 * 16 14 13 32 32 H 1.09000 * 109.46797 * 175.28859 * 16 14 13 33 33 H 0.96698 * 113.99998 * 179.97438 * 17 16 14 34 34 H 1.08004 * 120.41056 * 359.97438 * 19 18 14 35 35 H 1.08009 * 120.78903 * 180.21400 * 20 19 18 36 36 H 1.08002 * 120.41972 * 179.70973 * 21 20 19 37 37 H 1.08003 * 119.61896 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6113 1.9793 0.8461 5 6 3.5428 1.4439 0.1133 6 1 4.1426 1.8904 -0.6660 7 6 4.1518 0.8752 1.2118 8 7 3.4214 0.3320 2.1609 9 14 6.0145 0.8777 1.3526 10 1 6.5091 2.2779 1.3529 11 1 6.4162 0.2099 2.6167 12 1 6.5990 0.1465 0.1997 13 7 1.6427 2.1023 -1.2509 14 6 1.5885 3.5606 -1.0826 15 1 2.3689 3.8757 -0.3899 16 6 0.2204 3.9593 -0.5253 17 8 -0.7935 3.6453 -1.4820 18 6 1.8014 4.2286 -2.4166 19 6 2.2964 5.5183 -2.4637 20 6 2.4934 6.1216 -3.6960 21 6 2.1739 5.4059 -4.8400 22 6 1.6784 4.1221 -4.7145 23 7 1.5085 3.5778 -3.5253 24 1 -0.3633 0.4430 0.9272 25 1 -0.3634 -1.0245 -0.0800 26 1 -0.3633 0.5815 -0.8474 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.8498 -0.0684 2.9336 30 1 2.2615 1.8482 -2.0062 31 1 0.0309 3.4119 0.3981 32 1 0.2090 5.0300 -0.3218 33 1 -1.6888 3.8712 -1.1948 34 1 2.5300 6.0479 -1.5518 35 1 2.8821 7.1271 -3.7635 36 1 2.3102 5.8465 -5.8166 37 1 1.4267 3.5581 -5.6005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:29 Heat of formation + Delta-G solvation = -36.917551 kcal Electronic energy + Delta-G solvation = -18755.159835 eV Core-core repulsion = 15917.423050 eV Total energy + Delta-G solvation = -2837.736785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.12075 -38.55635 -36.99842 -34.73721 -33.43120 -33.14177 -31.52120 -29.25351 -27.60636 -25.09566 -24.40516 -24.03350 -21.60001 -21.14254 -18.74572 -18.30273 -17.61781 -17.18128 -16.70598 -16.41106 -15.72757 -15.40467 -15.12986 -14.70199 -14.61370 -14.24259 -13.97907 -13.79984 -13.37068 -13.18269 -13.02501 -12.83449 -12.68642 -12.52036 -12.14587 -11.82173 -11.49829 -11.40611 -11.05399 -10.75336 -10.66338 -10.43630 -10.09005 -9.78679 -8.93147 -8.02981 -6.27323 0.28881 0.53597 1.37140 1.38784 1.46063 2.39608 3.00967 3.13976 3.40385 3.46845 3.70917 4.02185 4.13178 4.33734 4.36006 4.41522 4.60657 4.64673 4.70742 4.80716 4.85637 4.89137 4.96151 4.99124 5.18028 5.31358 5.34597 5.46192 5.53040 5.66639 5.79872 5.91957 6.11769 6.23243 6.44607 6.82137 7.04285 7.08189 7.33602 7.44558 8.91219 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.020028 B = 0.007433 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.684292 B = 3766.250870 C = 4586.142155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.100 4.100 3 C 0.222 3.778 4 H 0.006 0.994 5 C -0.562 4.562 6 H 0.042 0.958 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.947 3.053 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.277 1.277 13 N -0.652 5.652 14 C 0.134 3.866 15 H 0.054 0.946 16 C 0.105 3.895 17 O -0.563 6.563 18 C 0.125 3.875 19 C -0.185 4.185 20 C -0.076 4.076 21 C -0.177 4.177 22 C 0.079 3.921 23 N -0.484 5.484 24 H 0.031 0.969 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.020 0.980 29 H 0.263 0.737 30 H 0.327 0.673 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.381 0.619 34 H 0.142 0.858 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.150 11.827 -9.412 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.139 4.139 3 C 0.113 3.887 4 H 0.024 0.976 5 C -0.601 4.601 6 H 0.061 0.939 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.773 3.227 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.202 1.202 13 N -0.281 5.281 14 C 0.022 3.978 15 H 0.072 0.928 16 C 0.026 3.974 17 O -0.368 6.368 18 C -0.012 4.012 19 C -0.206 4.206 20 C -0.101 4.101 21 C -0.196 4.196 22 C -0.078 4.078 23 N -0.193 5.193 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.072 0.928 30 H 0.144 0.856 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.228 0.772 34 H 0.160 0.840 35 H 0.183 0.817 36 H 0.183 0.817 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.633 10.580 -9.392 14.886 hybrid contribution 1.874 0.892 0.830 2.235 sum -2.759 11.471 -8.563 14.578 Atomic orbital electron populations 1.21530 0.96408 0.99634 1.00392 1.21327 0.94421 0.98531 0.99590 1.18987 0.91168 0.91570 0.86929 0.97614 1.22136 0.94199 1.38258 1.05505 0.93950 1.25619 1.01940 0.94675 0.95402 1.69988 1.36424 1.38459 1.09803 0.85791 0.81260 0.78295 0.77345 1.19819 1.20597 1.20219 1.60712 1.55981 1.04453 1.06998 1.20440 0.95700 0.90052 0.91567 0.92807 1.22017 0.87281 0.97586 0.90561 1.86654 1.18455 1.87528 1.44164 1.21176 0.94181 0.92043 0.93837 1.22145 1.02056 0.95803 1.00569 1.21896 0.95820 1.01042 0.91389 1.22465 1.00560 0.95659 1.00917 1.23269 0.95270 0.94091 0.95207 1.67407 1.14605 1.38490 0.98755 0.94969 0.93959 0.92469 0.91967 0.96129 0.92793 0.85572 0.94578 0.92223 0.77162 0.84031 0.81737 0.81664 0.81350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 9.85 71.98 0.71 -4.59 16 2 C -0.10 -5.07 5.45 30.59 0.17 -4.91 16 3 C 0.22 11.45 1.79 44.17 0.08 11.53 16 4 H 0.01 0.33 7.13 -2.39 -0.02 0.32 16 5 C -0.56 -31.26 8.22 25.60 0.21 -31.05 16 6 H 0.04 2.38 7.76 -2.91 -0.02 2.35 16 7 C 0.02 1.33 5.29 84.66 0.45 1.78 16 8 N -0.91 -52.19 11.30 21.45 0.24 -51.95 16 9 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 N -0.65 -29.70 5.10 -477.15 -2.43 -32.13 16 14 C 0.13 5.30 2.47 44.17 0.11 5.41 16 15 H 0.05 2.31 7.56 -2.38 -0.02 2.29 16 16 C 0.10 3.58 6.77 71.98 0.49 4.07 16 17 O -0.56 -18.85 13.09 -148.98 -1.95 -20.80 16 18 C 0.13 4.44 5.23 42.55 0.22 4.66 16 19 C -0.19 -5.22 9.77 22.36 0.22 -5.00 16 20 C -0.08 -1.65 10.17 22.46 0.23 -1.42 16 21 C -0.18 -3.73 10.11 22.36 0.23 -3.51 16 22 C 0.08 2.16 11.18 84.67 0.95 3.11 16 23 N -0.48 -17.37 9.28 -183.89 -1.71 -19.07 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 2.48 7.62 -2.39 -0.02 2.46 16 27 H 0.06 3.48 5.96 -2.39 -0.01 3.47 16 28 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 30 H 0.33 15.83 7.55 -89.70 -0.68 15.15 16 31 H 0.04 1.33 7.40 -2.39 -0.02 1.32 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 33 H 0.38 8.82 9.12 -74.06 -0.68 8.14 16 34 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -67.19 309.11 -0.05 -67.24 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -0.28 Total: 30.70 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 4.05 Total: -19.90 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -3.90 Total: -103.15 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -1.95 Total: -20.80 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -67.19 -0.05 -67.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.320 kcal (2) G-P(sol) polarization free energy of solvation -67.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds