Wall clock time and date at job start Sun Mar 29 2020 23:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39711 * 120.07890 * 2 1 4 4 C 1.47635 * 120.15086 * 0.02562 * 3 2 1 5 5 O 1.21432 * 120.00433 * 6.16257 * 4 3 2 6 6 O 1.35054 * 119.99952 * 186.15757 * 4 3 2 7 7 C 1.22527 * 117.00166 * 180.02562 * 6 4 3 8 8 H 1.08009 * 119.99584 * 359.97438 * 7 6 4 9 9 C 1.46579 * 120.00132 * 180.02562 * 7 6 4 10 10 N 1.29377 * 120.00085 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99787 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47335 * 359.97438 * 11 9 7 13 13 H 1.48510 * 109.46946 * 119.99861 * 11 9 7 14 14 H 1.48500 * 109.46938 * 239.99206 * 11 9 7 15 15 C 1.39665 * 119.69410 * 179.73031 * 3 2 1 16 16 C 1.37951 * 119.83454 * 0.58982 * 15 3 2 17 17 C 1.38355 * 120.15941 * 359.42814 * 16 15 3 18 18 C 1.37904 * 120.08261 * 180.02562 * 2 1 3 19 19 N 1.48019 * 119.92007 * 359.97438 * 18 2 1 20 20 O 1.31700 * 119.99979 * 173.06556 * 19 18 2 21 21 O 1.31696 * 119.99777 * 353.06752 * 19 18 2 22 22 H 1.09000 * 109.46823 * 268.16418 * 1 2 3 23 23 H 1.08997 * 109.47224 * 28.16311 * 1 2 3 24 24 H 1.09004 * 109.47034 * 148.16030 * 1 2 3 25 25 H 0.96996 * 120.00638 * 180.02562 * 10 9 7 26 26 H 1.07992 * 120.07800 * 180.29484 * 15 3 2 27 27 H 1.08003 * 119.91534 * 179.70896 * 16 15 3 28 28 H 1.08004 * 119.84146 * 180.27847 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.2090 0.0000 4 6 1.4742 2.4905 0.0006 5 8 0.2652 2.4984 0.1139 6 8 2.1482 3.6540 -0.1249 7 6 1.4854 4.6845 -0.1170 8 1 0.4115 4.6350 -0.0134 9 6 2.1499 5.9844 -0.2494 10 7 3.4363 6.0436 -0.3740 11 14 1.1393 7.5553 -0.2381 12 1 -0.2987 7.2178 -0.0849 13 1 1.5703 8.4131 0.8949 14 1 1.3429 8.2840 -1.5159 15 6 3.6038 1.1996 0.0057 16 6 4.2821 -0.0016 -0.0010 17 6 3.5822 -1.1951 -0.0014 18 6 2.1982 -1.1933 -0.0005 19 7 1.4582 -2.4752 -0.0005 20 8 2.1095 -3.6115 -0.1387 21 8 0.1485 -2.4794 0.1376 22 1 -0.3633 -0.0329 1.0272 23 1 -0.3633 0.9060 -0.4850 24 1 -0.3633 -0.8731 -0.5422 25 1 3.8761 6.9037 -0.4612 26 1 4.1513 2.1304 0.0106 27 1 5.3621 -0.0104 -0.0014 28 1 4.1185 -2.1326 -0.0022 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003444475.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:24 Heat of formation + Delta-G solvation = -7.433658 kcal Electronic energy + Delta-G solvation = -17769.074487 eV Core-core repulsion = 14563.231369 eV Total energy + Delta-G solvation = -3205.843119 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 251.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.37347 -41.28600 -39.40384 -37.75645 -35.83486 -34.75232 -33.80723 -33.10121 -29.40712 -27.63519 -27.14856 -24.85226 -23.11103 -22.22559 -20.39724 -19.96264 -19.18628 -18.12432 -17.38591 -17.13425 -17.06919 -16.77102 -16.59904 -16.16823 -15.11224 -14.85991 -14.50208 -14.02441 -13.78474 -13.43446 -13.30962 -13.24059 -13.02149 -12.58950 -12.48196 -12.18163 -11.99947 -11.87738 -11.62890 -10.92251 -10.71253 -10.50630 -10.23469 -8.87408 -6.01530 -1.83984 -0.54312 -0.03897 -0.01223 1.20284 1.33289 1.48048 1.62324 2.04261 2.30431 2.47068 2.89952 3.28031 3.46805 3.57849 3.75416 3.84134 4.09725 4.37785 4.60113 4.63627 4.65928 4.81448 4.90399 5.01839 5.10935 5.25674 5.43358 5.62277 5.68276 6.52010 6.82504 7.94161 8.34328 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.043219 B = 0.005430 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.714288 B = 5155.759966 C = 5781.674752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.019 3.981 3 C -0.099 4.099 4 C 0.344 3.656 5 O -0.584 6.584 6 O -0.153 6.153 7 C -0.431 4.431 8 H 0.073 0.927 9 C 0.013 3.987 10 N -0.833 5.833 11 Si 1.014 2.986 12 H -0.268 1.268 13 H -0.252 1.252 14 H -0.253 1.253 15 C -0.020 4.020 16 C -0.103 4.103 17 C -0.027 4.027 18 C -0.029 4.029 19 N -0.006 5.006 20 O -0.170 6.170 21 O -0.211 6.211 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.301 0.699 26 H 0.157 0.843 27 H 0.205 0.795 28 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.097 -6.672 0.103 9.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.017 3.983 3 C -0.101 4.101 4 C 0.201 3.799 5 O -0.490 6.490 6 O -0.055 6.055 7 C -0.509 4.509 8 H 0.091 0.909 9 C -0.199 4.199 10 N -0.464 5.464 11 Si 0.832 3.168 12 H -0.192 1.192 13 H -0.176 1.176 14 H -0.177 1.177 15 C -0.039 4.039 16 C -0.121 4.121 17 C -0.046 4.046 18 C -0.117 4.117 19 N 0.466 4.534 20 O -0.366 6.366 21 O -0.393 6.393 22 H 0.100 0.900 23 H 0.109 0.891 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.175 0.825 27 H 0.222 0.778 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 6.281 -5.951 0.108 8.653 hybrid contribution -1.101 0.361 0.056 1.160 sum 5.179 -5.590 0.164 7.623 Atomic orbital electron populations 1.21767 0.88764 1.05734 1.04111 1.19819 0.98516 0.89509 0.90486 1.18866 0.94466 0.89083 1.07724 1.20986 0.86370 0.84893 0.87669 1.90457 1.15913 1.86166 1.56475 1.80488 1.41964 1.13873 1.69144 1.20892 0.93472 0.83788 1.52726 0.90938 1.28029 0.96866 1.00875 0.94154 1.68899 1.11123 1.30332 1.36019 0.84612 0.77926 0.74297 0.79932 1.19189 1.17624 1.17691 1.22236 0.91740 1.01689 0.88228 1.21635 1.03185 0.88128 0.99134 1.21678 0.88861 1.02902 0.91156 1.20187 0.92731 0.79730 1.19013 1.50522 1.02958 1.04227 0.95734 1.96203 1.68697 1.17310 1.54419 1.96200 0.90348 1.95495 1.57235 0.90041 0.89103 0.88312 0.88700 0.82506 0.77848 0.79284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.74 7.88 71.24 0.56 -5.18 15 2 C 0.02 0.69 5.92 -19.59 -0.12 0.57 15 3 C -0.10 -3.84 5.87 -20.10 -0.12 -3.96 15 4 C 0.34 17.22 7.70 70.30 0.54 17.76 15 5 O -0.58 -31.99 12.32 20.04 0.25 -31.74 15 6 O -0.15 -8.28 8.56 82.17 0.70 -7.58 15 7 C -0.43 -24.16 9.62 70.00 0.67 -23.49 15 8 H 0.07 4.31 6.70 -2.91 -0.02 4.29 15 9 C 0.01 0.67 5.69 87.23 0.50 1.17 15 10 N -0.83 -41.59 13.66 23.21 0.32 -41.27 15 11 Si 1.01 38.13 29.64 68.60 2.03 40.16 15 12 H -0.27 -10.44 7.11 99.48 0.71 -9.73 15 13 H -0.25 -8.70 7.11 99.48 0.71 -7.99 15 14 H -0.25 -8.74 7.11 99.48 0.71 -8.03 15 15 C -0.02 -0.59 9.62 22.55 0.22 -0.37 15 16 C -0.10 -1.97 10.03 22.23 0.22 -1.75 15 17 C -0.03 -0.57 9.58 22.34 0.21 -0.36 15 18 C -0.03 -0.89 6.85 36.33 0.25 -0.64 15 19 N -0.01 -0.22 4.98 -46.56 -0.23 -0.45 15 20 O -0.17 -5.31 19.16 3.51 0.07 -5.24 15 21 O -0.21 -7.71 15.85 3.52 0.06 -7.65 15 22 H 0.08 3.15 8.14 -2.39 -0.02 3.13 15 23 H 0.09 4.02 5.23 -2.45 -0.01 4.01 15 24 H 0.10 3.61 5.37 -2.41 -0.01 3.59 15 25 H 0.30 13.13 8.26 -92.71 -0.77 12.36 15 26 H 0.16 4.67 7.63 -2.91 -0.02 4.64 15 27 H 0.20 1.87 8.06 -2.91 -0.02 1.84 15 28 H 0.19 2.76 7.59 -2.91 -0.02 2.74 15 Total: -1.00 -66.51 261.21 7.36 -59.15 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.22 Total: 10.85 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 2.94 Total: -16.25 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.08 Total: -41.72 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: 1.07 Total: -52.21 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -66.51 7.36 -59.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003444475.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.720 kcal (2) G-P(sol) polarization free energy of solvation -66.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds