Wall clock time and date at job start Sun Mar 29 2020 23:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37957 * 119.91988 * 2 1 4 4 C 1.39662 * 119.84027 * 179.73088 * 3 2 1 5 5 C 1.47636 * 120.15571 * 180.24565 * 4 3 2 6 6 O 1.21433 * 119.99910 * 0.29539 * 5 4 3 7 7 O 1.35044 * 120.00330 * 180.28886 * 5 4 3 8 8 C 1.22524 * 117.00079 * 179.97438 * 7 5 4 9 9 H 1.08000 * 120.00083 * 0.02562 * 8 7 5 10 10 C 1.46580 * 119.99965 * 180.02562 * 8 7 5 11 11 N 1.29383 * 120.00387 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00247 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46780 * 59.99887 * 12 10 8 14 14 H 1.48498 * 109.47131 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46976 * 300.00424 * 12 10 8 16 16 C 1.39708 * 119.69132 * 0.53527 * 4 3 2 17 17 C 1.37906 * 119.84379 * 359.73086 * 16 4 3 18 18 C 1.38358 * 119.92526 * 180.26517 * 2 1 3 19 19 N 1.48015 * 119.84378 * 359.97438 * 18 2 1 20 20 O 1.31695 * 120.00375 * 173.20584 * 19 18 2 21 21 O 1.31702 * 119.99900 * 353.20765 * 19 18 2 22 22 H 1.09003 * 109.47249 * 262.53113 * 1 2 3 23 23 H 1.09004 * 109.46877 * 142.53379 * 1 2 3 24 24 H 1.09002 * 109.47431 * 22.53503 * 1 2 3 25 25 H 1.07997 * 120.07639 * 359.97438 * 3 2 1 26 26 H 0.96996 * 120.00462 * 180.02562 * 11 10 8 27 27 H 1.07997 * 120.07636 * 179.75419 * 16 4 3 28 28 H 1.07995 * 119.92532 * 179.97438 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1951 1.1957 0.0000 4 6 3.5917 1.1938 0.0057 5 6 4.3351 2.4693 0.0112 6 8 3.7322 3.5234 0.0162 7 8 5.6855 2.4638 0.0108 8 6 6.2461 3.5533 0.0150 9 1 5.6616 4.4614 0.0193 10 6 7.7102 3.6241 0.0143 11 7 8.4106 2.5362 0.0088 12 14 8.5651 5.2850 0.0215 13 1 8.1700 6.0398 1.2379 14 1 10.0365 5.0844 0.0189 15 1 8.1683 6.0512 -1.1871 16 6 4.2820 -0.0208 0.0000 17 6 3.5812 -1.2085 -0.0055 18 6 2.1972 -1.1991 -0.0055 19 7 1.4519 -2.4779 -0.0109 20 8 2.0988 -3.6165 -0.1511 21 8 0.1419 -2.4772 0.1245 22 1 -0.3634 -0.1336 1.0190 23 1 -0.3633 -0.8157 -0.6252 24 1 -0.3634 0.9492 -0.3939 25 1 1.6550 2.1309 -0.0004 26 1 9.3794 2.5830 0.0087 27 1 5.3620 -0.0295 0.0003 28 1 4.1135 -2.1481 -0.0104 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007532508.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:32 Heat of formation + Delta-G solvation = -5.060370 kcal Electronic energy + Delta-G solvation = -17433.574406 eV Core-core repulsion = 14227.834200 eV Total energy + Delta-G solvation = -3205.740205 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 251.067 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.75222 -39.75655 -37.78011 -35.80898 -34.26094 -33.38020 -32.62231 -31.35143 -27.55147 -26.99006 -25.28587 -22.87824 -21.91604 -20.64426 -18.83472 -18.00934 -17.78614 -17.22880 -15.77480 -15.55507 -15.34367 -15.21799 -14.70361 -14.35654 -13.67435 -13.44934 -13.14472 -12.65918 -12.50652 -12.24587 -12.17866 -11.66462 -11.13798 -11.06959 -10.96381 -10.81645 -10.42302 -10.32399 -10.10239 -9.50654 -9.21233 -9.06702 -8.82367 -7.53489 -4.20635 -0.49790 1.16307 1.38276 1.61502 2.63000 2.69469 2.74662 3.07020 3.35743 3.85439 4.02741 4.51157 4.68419 4.72196 5.20280 5.26044 5.48836 5.50372 5.74172 5.76670 5.96405 6.09814 6.19662 6.22455 6.42744 6.48520 6.69121 6.87955 7.13950 7.25059 7.85620 8.50184 9.38093 9.75216 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.045234 B = 0.004833 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.853815 B = 5791.831060 C = 6393.799003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.016 4.016 3 C -0.105 4.105 4 C -0.001 4.001 5 C 0.315 3.685 6 O -0.578 6.578 7 O -0.126 6.126 8 C -0.302 4.302 9 H 0.110 0.890 10 C 0.034 3.966 11 N -0.761 5.761 12 Si 0.959 3.041 13 H -0.256 1.256 14 H -0.268 1.268 15 H -0.256 1.256 16 C -0.115 4.115 17 C -0.049 4.049 18 C -0.038 4.038 19 N 0.006 4.994 20 O -0.222 6.222 21 O -0.209 6.209 22 H 0.084 0.916 23 H 0.097 0.903 24 H 0.069 0.931 25 H 0.150 0.850 26 H 0.300 0.700 27 H 0.154 0.846 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.321 -0.807 -0.011 2.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.018 4.018 3 C -0.124 4.124 4 C -0.004 4.004 5 C 0.175 3.825 6 O -0.484 6.484 7 O -0.025 6.025 8 C -0.380 4.380 9 H 0.128 0.872 10 C -0.187 4.187 11 N -0.389 5.389 12 Si 0.780 3.220 13 H -0.180 1.180 14 H -0.192 1.192 15 H -0.180 1.180 16 C -0.134 4.134 17 C -0.069 4.069 18 C -0.128 4.128 19 N 0.466 4.534 20 O -0.402 6.402 21 O -0.391 6.391 22 H 0.102 0.898 23 H 0.115 0.885 24 H 0.088 0.912 25 H 0.168 0.832 26 H 0.113 0.887 27 H 0.172 0.828 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.929 -0.271 -0.012 1.948 hybrid contribution 0.359 0.228 0.023 0.426 sum -1.570 -0.042 0.011 1.571 Atomic orbital electron populations 1.21300 0.88908 1.03970 1.04163 1.19634 0.97575 0.90042 0.94535 1.20935 0.92527 0.97145 1.01824 1.19480 0.93024 0.91881 0.96025 1.20142 0.80806 0.88863 0.92669 1.90600 1.66884 1.32212 1.58729 1.80553 1.21498 1.35913 1.64547 1.21515 0.89362 0.87729 1.39430 0.87247 1.27490 0.94666 1.01042 0.95502 1.68893 1.09553 1.30769 1.29702 0.85437 0.77570 0.78019 0.80993 1.17999 1.19236 1.18002 1.21426 1.01495 0.89798 1.00711 1.20871 0.90572 1.00383 0.95077 1.20099 0.91508 0.80701 1.20535 1.50317 1.02634 1.04067 0.96389 1.96222 1.69267 1.16937 1.57787 1.96132 0.90506 1.95597 1.56857 0.89795 0.88473 0.91225 0.83220 0.88689 0.82799 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.59 36.00 0.31 -1.43 15 2 C -0.02 -0.26 5.87 -104.68 -0.61 -0.88 15 3 C -0.10 -1.84 9.22 -39.15 -0.36 -2.20 15 4 C 0.00 -0.02 5.87 -104.98 -0.62 -0.64 15 5 C 0.31 7.41 7.77 34.57 0.27 7.68 15 6 O -0.58 -14.90 15.47 -19.19 -0.30 -15.19 15 7 O -0.13 -3.08 8.54 -1.79 -0.02 -3.10 15 8 C -0.30 -7.35 9.62 34.09 0.33 -7.02 15 9 H 0.11 2.72 6.70 -52.49 -0.35 2.37 15 10 C 0.03 0.74 5.69 -15.22 -0.09 0.65 15 11 N -0.76 -17.00 13.66 55.99 0.76 -16.24 15 12 Si 0.96 16.23 29.64 -169.99 -5.04 11.19 15 13 H -0.26 -4.30 7.11 56.52 0.40 -3.90 15 14 H -0.27 -4.25 7.11 56.52 0.40 -3.85 15 15 H -0.26 -4.31 7.11 56.52 0.40 -3.90 15 16 C -0.11 -2.01 9.62 -39.15 -0.38 -2.38 15 17 C -0.05 -0.81 9.56 -39.64 -0.38 -1.19 15 18 C -0.04 -0.66 6.86 -79.84 -0.55 -1.20 15 19 N 0.01 0.10 4.98 34.01 0.17 0.27 15 20 O -0.22 -4.28 19.16 -31.57 -0.60 -4.89 15 21 O -0.21 -3.81 15.93 -31.57 -0.50 -4.31 15 22 H 0.08 1.09 8.14 -51.93 -0.42 0.66 15 23 H 0.10 1.39 5.78 -51.93 -0.30 1.09 15 24 H 0.07 0.81 8.03 -51.93 -0.42 0.39 15 25 H 0.15 2.54 7.64 -52.49 -0.40 2.14 15 26 H 0.30 5.88 8.26 -40.82 -0.34 5.54 15 27 H 0.15 2.64 7.61 -52.49 -0.40 2.24 15 28 H 0.15 2.16 7.58 -52.49 -0.40 1.76 15 LS Contribution 267.11 15.07 4.03 4.03 Total: -1.00 -26.93 267.11 -5.40 -32.32 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -1.82 Total: 4.54 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.08 Total: -8.62 kcal Atomic # 7 Polarization: -16.90 SS G_CDS: 0.93 Total: -15.96 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -1.42 Total: -27.50 kcal Atomic # 14 Polarization: 16.23 SS G_CDS: -5.04 Total: 11.19 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.93 -5.40 -32.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007532508.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.264 kcal (2) G-P(sol) polarization free energy of solvation -26.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds