Wall clock time and date at job start Sun Mar 29 2020 23:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86796 * 120.00074 * 2 1 4 4 H 1.48502 * 109.46752 * 239.99767 * 3 2 1 5 5 H 1.48500 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47369 * 119.99859 * 3 2 1 7 7 C 1.40141 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99575 * 180.02562 * 7 2 1 9 9 C 1.41813 * 120.00187 * 0.02562 * 7 2 1 10 10 O 1.21775 * 120.00148 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00301 * 179.97438 * 9 7 2 12 12 C 1.39586 * 120.00484 * 184.51065 * 11 9 7 13 13 C 1.38839 * 120.03517 * 325.24109 * 12 11 9 14 14 C 1.38366 * 120.31456 * 180.02562 * 13 12 11 15 15 C 1.37906 * 120.40360 * 359.97438 * 14 13 12 16 16 C 1.39833 * 120.07233 * 359.97438 * 15 14 13 17 17 C 1.47404 * 120.15937 * 179.97438 * 16 15 14 18 18 O 1.21509 * 119.99824 * 180.02562 * 17 16 15 19 19 O 1.34753 * 120.00302 * 359.72119 * 17 16 15 20 20 C 1.39555 * 120.04461 * 145.47765 * 12 11 9 21 21 O 1.35655 * 120.19507 * 0.02562 * 20 12 11 22 22 H 0.96994 * 120.00235 * 0.02562 * 1 2 3 23 23 H 0.97003 * 119.99843 * 4.51185 * 11 9 7 24 24 H 1.07995 * 119.84484 * 0.02562 * 13 12 11 25 25 H 1.08003 * 119.80266 * 179.97438 * 14 13 12 26 26 H 1.08000 * 119.96488 * 179.97438 * 15 14 13 27 27 H 0.96698 * 117.00126 * 179.97438 * 19 17 16 28 28 H 0.96702 * 114.00012 * 270.23477 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6962 -1.2125 5 1 1.2753 2.7464 -0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0070 -1.2137 0.0005 8 1 3.0869 -1.2136 0.0010 9 6 1.2979 -2.4418 0.0005 10 8 0.0801 -2.4418 -0.0004 11 7 1.9717 -3.6090 0.0005 12 6 1.2770 -4.8160 -0.0945 13 6 0.0306 -4.9494 0.5025 14 6 -0.6627 -6.1434 0.4123 15 6 -0.1244 -7.2132 -0.2714 16 6 1.1293 -7.0968 -0.8798 17 6 1.7068 -8.2392 -1.6106 18 8 2.7966 -8.1350 -2.1378 19 8 1.0289 -9.4012 -1.6888 20 6 1.8366 -5.8917 -0.7855 21 8 3.0563 -5.7692 -1.3663 22 1 -0.4850 0.8400 -0.0004 23 1 2.9395 -3.6104 0.0666 24 1 -0.3997 -4.1173 1.0398 25 1 -1.6316 -6.2381 0.8802 26 1 -0.6716 -8.1420 -0.3370 27 1 1.4480 -10.1218 -2.1789 28 1 3.0272 -5.4508 -2.2790 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012650322.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:02 Heat of formation + Delta-G solvation = -143.120318 kcal Electronic energy + Delta-G solvation = -17775.629628 eV Core-core repulsion = 14563.902694 eV Total energy + Delta-G solvation = -3211.726934 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 251.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.39356 -39.17434 -37.36319 -36.27279 -35.71551 -33.60425 -32.47766 -30.34016 -28.83937 -26.47124 -24.38204 -22.26105 -21.31802 -19.94851 -18.11970 -17.90428 -17.40341 -16.94159 -15.74650 -15.52282 -15.16936 -15.02968 -14.87700 -14.08286 -13.89472 -13.21111 -12.92306 -12.64117 -11.88708 -11.77308 -11.58455 -11.42468 -11.40019 -11.11682 -10.74836 -10.69626 -10.43146 -10.10363 -9.47609 -8.97451 -8.52603 -7.80639 -7.21898 -6.45726 -4.99026 0.99992 1.68300 2.83957 3.03176 3.08625 3.10092 3.13745 3.92144 3.97845 4.33856 4.52549 4.59143 5.15773 5.38168 5.51113 5.60180 5.86201 5.99339 6.17678 6.41943 6.54946 6.75993 6.82082 7.10543 7.17722 7.72549 7.83505 7.96995 8.04294 8.13836 8.72318 9.17231 10.28476 10.47488 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.043334 B = 0.005376 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.987700 B = 5206.771535 C = 5735.675577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.088 3.912 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.542 3.458 10 O -0.569 6.569 11 N -0.694 5.694 12 C 0.160 3.840 13 C -0.082 4.082 14 C -0.124 4.124 15 C -0.093 4.093 16 C -0.146 4.146 17 C 0.528 3.472 18 O -0.506 6.506 19 O -0.517 6.517 20 C 0.112 3.888 21 O -0.477 6.477 22 H 0.274 0.726 23 H 0.398 0.602 24 H 0.155 0.845 25 H 0.128 0.872 26 H 0.132 0.868 27 H 0.408 0.592 28 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.002 -10.886 -1.311 11.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.090 0.910 9 C 0.352 3.648 10 O -0.453 6.453 11 N -0.338 5.338 12 C 0.059 3.941 13 C -0.103 4.103 14 C -0.143 4.143 15 C -0.113 4.113 16 C -0.149 4.149 17 C 0.373 3.627 18 O -0.395 6.395 19 O -0.329 6.329 20 C 0.063 3.937 21 O -0.287 6.287 22 H 0.085 0.915 23 H 0.232 0.768 24 H 0.173 0.827 25 H 0.146 0.854 26 H 0.149 0.851 27 H 0.266 0.734 28 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.315 -10.478 -0.709 10.507 hybrid contribution 1.086 0.458 -0.852 1.455 sum 1.401 -10.020 -1.562 10.237 Atomic orbital electron populations 1.69985 1.07295 1.28157 1.31934 1.25767 0.94687 1.00743 0.92347 0.86305 0.79846 0.80210 0.79788 1.19003 1.20305 1.18970 1.20027 0.94460 0.89856 1.52732 0.91045 1.17106 0.87593 0.81973 0.78096 1.90626 1.13536 1.85804 1.55320 1.44122 1.10061 1.03576 1.76008 1.18202 0.93626 0.86456 0.95779 1.21804 0.94053 0.97781 0.96656 1.21044 1.00319 0.92614 1.00311 1.21124 0.93519 0.99307 0.97373 1.19065 0.97005 0.92327 1.06466 1.20810 0.82394 0.82038 0.77453 1.90890 1.20845 1.83151 1.44646 1.84591 1.52732 1.23479 1.72074 1.18236 0.86518 0.91696 0.97259 1.84708 1.23803 1.88583 1.31584 0.91477 0.76759 0.82733 0.85388 0.85060 0.73441 0.75540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.84 11.73 55.56 0.65 -20.19 15 2 C 0.09 2.29 5.50 -17.35 -0.10 2.20 15 3 Si 0.91 18.91 29.56 -169.99 -5.02 13.89 15 4 H -0.27 -5.38 7.11 56.52 0.40 -4.97 15 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 6 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 7 C -0.54 -14.20 9.32 -37.50 -0.35 -14.55 15 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 15 9 C 0.54 14.51 7.41 -14.89 -0.11 14.40 15 10 O -0.57 -16.87 12.28 5.12 0.06 -16.80 15 11 N -0.69 -15.38 5.16 -12.33 -0.06 -15.44 15 12 C 0.16 3.28 6.32 -83.61 -0.53 2.75 15 13 C -0.08 -1.62 8.68 -39.31 -0.34 -1.96 15 14 C -0.12 -1.98 10.01 -39.66 -0.40 -2.38 15 15 C -0.09 -1.40 9.61 -39.11 -0.38 -1.77 15 16 C -0.15 -2.44 5.88 -104.89 -0.62 -3.05 15 17 C 0.53 8.10 8.26 34.46 0.28 8.38 15 18 O -0.51 -8.91 15.94 -26.60 -0.42 -9.33 15 19 O -0.52 -5.85 12.67 -40.64 -0.52 -6.36 15 20 C 0.11 2.07 6.74 -38.41 -0.26 1.81 15 21 O -0.48 -8.37 11.13 -40.57 -0.45 -8.82 15 22 H 0.27 6.93 8.29 -40.82 -0.34 6.59 15 23 H 0.40 7.96 8.52 -40.82 -0.35 7.62 15 24 H 0.16 3.48 6.17 -52.49 -0.32 3.15 15 25 H 0.13 1.67 8.06 -52.48 -0.42 1.25 15 26 H 0.13 1.61 7.60 -52.49 -0.40 1.21 15 27 H 0.41 2.61 9.11 45.56 0.42 3.03 15 28 H 0.39 5.63 9.06 45.56 0.41 6.05 15 LS Contribution 262.21 15.07 3.95 3.95 Total: -1.00 -33.40 262.21 -4.81 -38.21 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -0.21 Total: 15.07 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -2.79 Total: 5.83 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.59 Total: -35.63 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.33 Total: -41.32 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.40 -4.81 -38.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012650322.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.912 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds