Wall clock time and date at job start Sun Mar 29 2020 23:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86796 * 120.00074 * 2 1 4 4 H 1.48502 * 109.46752 * 239.99767 * 3 2 1 5 5 H 1.48500 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47369 * 119.99859 * 3 2 1 7 7 C 1.40141 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99575 * 180.02562 * 7 2 1 9 9 C 1.41813 * 120.00187 * 0.02562 * 7 2 1 10 10 O 1.21775 * 120.00148 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00301 * 179.97438 * 9 7 2 12 12 C 1.39586 * 120.00484 * 184.51065 * 11 9 7 13 13 C 1.38839 * 120.03517 * 325.24109 * 12 11 9 14 14 C 1.38366 * 120.31456 * 180.02562 * 13 12 11 15 15 C 1.37906 * 120.40360 * 359.97438 * 14 13 12 16 16 C 1.39833 * 120.07233 * 359.97438 * 15 14 13 17 17 C 1.47404 * 120.15937 * 179.97438 * 16 15 14 18 18 O 1.21509 * 119.99824 * 180.02562 * 17 16 15 19 19 O 1.34753 * 120.00302 * 359.72119 * 17 16 15 20 20 C 1.39555 * 120.04461 * 145.47765 * 12 11 9 21 21 O 1.35655 * 120.19507 * 0.02562 * 20 12 11 22 22 H 0.96994 * 120.00235 * 0.02562 * 1 2 3 23 23 H 0.97003 * 119.99843 * 4.51185 * 11 9 7 24 24 H 1.07995 * 119.84484 * 0.02562 * 13 12 11 25 25 H 1.08003 * 119.80266 * 179.97438 * 14 13 12 26 26 H 1.08000 * 119.96488 * 179.97438 * 15 14 13 27 27 H 0.96698 * 117.00126 * 179.97438 * 19 17 16 28 28 H 0.96702 * 114.00012 * 270.23477 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6962 -1.2125 5 1 1.2753 2.7464 -0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0070 -1.2137 0.0005 8 1 3.0869 -1.2136 0.0010 9 6 1.2979 -2.4418 0.0005 10 8 0.0801 -2.4418 -0.0004 11 7 1.9717 -3.6090 0.0005 12 6 1.2770 -4.8160 -0.0945 13 6 0.0306 -4.9494 0.5025 14 6 -0.6627 -6.1434 0.4123 15 6 -0.1244 -7.2132 -0.2714 16 6 1.1293 -7.0968 -0.8798 17 6 1.7068 -8.2392 -1.6106 18 8 2.7966 -8.1350 -2.1378 19 8 1.0289 -9.4012 -1.6888 20 6 1.8366 -5.8917 -0.7855 21 8 3.0563 -5.7692 -1.3663 22 1 -0.4850 0.8400 -0.0004 23 1 2.9395 -3.6104 0.0666 24 1 -0.3997 -4.1173 1.0398 25 1 -1.6316 -6.2381 0.8802 26 1 -0.6716 -8.1420 -0.3370 27 1 1.4480 -10.1218 -2.1789 28 1 3.0272 -5.4508 -2.2790 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012650322.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:01 Heat of formation + Delta-G solvation = -169.777624 kcal Electronic energy + Delta-G solvation = -17776.785575 eV Core-core repulsion = 14563.902694 eV Total energy + Delta-G solvation = -3212.882881 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 251.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.71320 -40.59199 -39.07013 -37.63693 -36.85252 -35.39429 -34.46481 -31.76097 -30.42251 -28.35105 -25.70066 -23.82511 -22.68989 -21.56916 -19.73571 -19.21084 -18.95702 -18.24871 -17.63801 -16.82085 -16.64724 -16.40021 -16.29626 -15.76320 -15.32676 -14.78661 -14.54057 -14.31440 -13.32901 -13.24817 -13.22417 -12.90506 -12.73418 -12.70856 -12.51385 -12.09199 -12.02218 -11.46982 -11.12250 -10.85586 -10.02354 -9.73441 -8.85595 -8.40985 -7.04735 -0.34410 0.29293 1.39615 1.40510 1.54060 1.57561 2.00835 2.20781 2.34016 2.68854 2.90318 3.20192 3.59040 3.96531 4.09060 4.26315 4.44955 4.62402 4.84849 5.13097 5.19579 5.32375 5.44988 5.59441 5.70097 5.85105 6.08635 6.21627 6.70804 6.71863 7.03001 7.31404 8.33220 8.52264 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.043334 B = 0.005376 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.987700 B = 5206.771535 C = 5735.675577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.035 3.965 3 Si 0.999 3.001 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.565 4.565 8 H 0.088 0.912 9 C 0.531 3.469 10 O -0.609 6.609 11 N -0.690 5.690 12 C 0.125 3.875 13 C -0.102 4.102 14 C -0.115 4.115 15 C -0.068 4.068 16 C -0.154 4.154 17 C 0.538 3.462 18 O -0.533 6.533 19 O -0.500 6.500 20 C 0.112 3.888 21 O -0.483 6.483 22 H 0.281 0.719 23 H 0.405 0.595 24 H 0.119 0.881 25 H 0.161 0.839 26 H 0.172 0.828 27 H 0.433 0.567 28 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -12.305 -1.715 12.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.184 4.184 3 Si 0.818 3.182 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.600 4.600 8 H 0.106 0.894 9 C 0.341 3.659 10 O -0.496 6.496 11 N -0.335 5.335 12 C 0.026 3.974 13 C -0.124 4.124 14 C -0.134 4.134 15 C -0.087 4.087 16 C -0.156 4.156 17 C 0.383 3.617 18 O -0.424 6.424 19 O -0.314 6.314 20 C 0.063 3.937 21 O -0.295 6.295 22 H 0.091 0.909 23 H 0.241 0.759 24 H 0.137 0.863 25 H 0.178 0.822 26 H 0.189 0.811 27 H 0.295 0.705 28 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 0.690 -11.984 -1.127 12.057 hybrid contribution 0.919 0.655 -0.744 1.352 sum 1.609 -11.330 -1.871 11.595 Atomic orbital electron populations 1.70123 1.09499 1.29680 1.33168 1.26964 0.95529 1.04938 0.90972 0.85033 0.78300 0.74476 0.80357 1.17914 1.19524 1.17825 1.20547 0.95493 0.90629 1.53334 0.89425 1.17385 0.87335 0.83443 0.77726 1.90585 1.15107 1.86894 1.57040 1.43645 1.10203 1.03446 1.76176 1.18423 0.94442 0.86518 0.98010 1.21664 0.94513 0.98565 0.97636 1.21332 1.01097 0.91155 0.99782 1.21532 0.92525 1.00068 0.94619 1.19316 0.97472 0.92302 1.06498 1.20454 0.81877 0.82640 0.76715 1.90893 1.22031 1.83801 1.45712 1.84509 1.51992 1.22882 1.72019 1.18265 0.86664 0.91801 0.96986 1.84667 1.23638 1.88653 1.32516 0.90924 0.75946 0.86273 0.82173 0.81058 0.70511 0.74219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.00 11.73 21.85 0.26 -45.74 15 2 C 0.03 1.84 5.50 85.33 0.47 2.31 15 3 Si 1.00 38.87 29.56 68.60 2.03 40.90 15 4 H -0.26 -9.43 7.11 99.48 0.71 -8.72 15 5 H -0.27 -10.08 7.11 99.48 0.71 -9.38 15 6 H -0.25 -9.37 7.11 99.48 0.71 -8.67 15 7 C -0.57 -30.79 9.32 23.62 0.22 -30.57 15 8 H 0.09 4.30 7.85 -2.91 -0.02 4.27 15 9 C 0.53 29.76 7.41 85.13 0.63 30.40 15 10 O -0.61 -38.14 12.28 -4.59 -0.06 -38.19 15 11 N -0.69 -31.90 5.16 -311.10 -1.61 -33.51 15 12 C 0.12 5.25 6.32 38.37 0.24 5.49 15 13 C -0.10 -4.18 8.68 22.44 0.19 -3.99 15 14 C -0.12 -3.48 10.01 22.22 0.22 -3.26 15 15 C -0.07 -1.81 9.61 22.58 0.22 -1.59 15 16 C -0.15 -4.77 5.88 -20.04 -0.12 -4.88 15 17 C 0.54 14.87 8.26 70.24 0.58 15.45 15 18 O -0.53 -17.63 15.94 26.82 0.43 -17.21 15 19 O -0.50 -9.08 12.67 -56.64 -0.72 -9.79 15 20 C 0.11 4.09 6.74 23.03 0.16 4.24 15 21 O -0.48 -16.83 11.13 -68.76 -0.77 -17.60 15 22 H 0.28 14.59 8.29 -92.71 -0.77 13.83 15 23 H 0.41 16.85 8.52 -92.71 -0.79 16.06 15 24 H 0.12 5.73 6.17 -2.91 -0.02 5.72 15 25 H 0.16 3.74 8.06 -2.91 -0.02 3.72 15 26 H 0.17 3.23 7.60 -2.91 -0.02 3.21 15 27 H 0.43 3.58 9.11 -74.06 -0.67 2.91 15 28 H 0.40 11.57 9.06 -74.06 -0.67 10.90 15 Total: -1.00 -75.22 262.21 1.51 -73.71 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.87 Total: 33.84 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 2.81 Total: 13.59 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -1.35 Total: -79.26 kcal Atomic # 8 Polarization: -81.68 SS G_CDS: -1.11 Total: -82.79 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -75.22 1.51 -73.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012650322.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.069 kcal (2) G-P(sol) polarization free energy of solvation -75.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds