Wall clock time and date at job start Sun Mar 29 2020 23:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39492 * 120.56575 * 92.57174 * 3 2 1 5 5 C 1.37961 * 120.05290 * 179.74105 * 4 3 2 6 6 C 1.38836 * 121.28509 * 0.56277 * 5 4 3 7 7 Br 1.89098 * 119.41511 * 179.71442 * 6 5 4 8 8 C 1.37524 * 121.16926 * 359.69749 * 6 5 4 9 9 C 1.40821 * 119.83576 * 0.02562 * 8 6 5 10 10 C 1.40795 * 120.60523 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99602 * 156.37433 * 10 9 8 12 12 C 1.40251 * 120.00222 * 336.37961 * 10 9 8 13 13 N 1.30652 * 119.99952 * 341.45727 * 12 10 9 14 14 Si 1.86801 * 120.00024 * 161.46302 * 12 10 9 15 15 H 1.48494 * 109.47099 * 89.99607 * 14 12 10 16 16 H 1.48503 * 109.46751 * 209.99594 * 14 12 10 17 17 H 1.48507 * 109.46875 * 329.99303 * 14 12 10 18 18 H 1.07999 * 119.97114 * 0.02562 * 4 3 2 19 19 H 1.08007 * 119.35538 * 180.28181 * 5 4 3 20 20 H 1.08002 * 120.07605 * 180.02562 * 8 6 5 21 21 H 0.97003 * 119.99926 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2774 0.0549 -1.1999 5 6 4.6569 0.0603 -1.1873 6 6 5.3673 0.0010 0.0041 7 35 7.2578 0.0035 -0.0407 8 6 4.7205 -0.0593 1.2162 9 6 3.3130 -0.0618 1.2599 10 6 2.6342 -0.1236 2.4918 11 1 1.6229 0.2475 2.5703 12 6 3.2711 -0.6669 3.6171 13 7 4.3201 -1.4315 3.4683 14 14 2.6196 -0.2977 5.3284 15 1 1.6167 -1.3247 5.7085 16 1 3.7421 -0.3182 6.3004 17 1 1.9821 1.0436 5.3365 18 1 2.7462 0.0972 -2.1392 19 1 5.1948 0.1071 -2.1228 20 1 5.2907 -0.1045 2.1323 21 1 4.7604 -1.8075 4.2466 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034947358.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:58 Heat of formation + Delta-G solvation = 33.246580 kcal Electronic energy + Delta-G solvation = -10441.601508 eV Core-core repulsion = 8327.970801 eV Total energy + Delta-G solvation = -2113.630707 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 250.964 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.81575 -35.20809 -34.24021 -31.29802 -30.09147 -28.39348 -25.93044 -21.97153 -21.35751 -17.88456 -17.13757 -15.54761 -14.46855 -14.23709 -13.45846 -12.98329 -12.82276 -12.09098 -11.89431 -11.72652 -11.59358 -11.41446 -11.24760 -10.78824 -10.12711 -10.01802 -9.87320 -9.48285 -9.46058 -7.93154 -7.63291 -7.26091 -4.84924 1.88741 2.52523 2.56567 2.87002 2.90045 2.98399 3.61898 3.82831 3.94685 4.35218 5.23601 5.33735 5.86819 6.20417 6.56416 6.60125 6.80787 6.89117 7.26177 7.45382 7.50915 7.65650 8.00716 8.28345 8.36291 8.72917 9.62767 Molecular weight = 250.96amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.010273 C = 0.007098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.197337 B = 2724.821818 C = 3943.850816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.300 3.700 3 C -0.183 4.183 4 C -0.019 4.019 5 C -0.236 4.236 6 C -0.031 4.031 7 Br -0.103 7.103 8 C -0.136 4.136 9 C 0.150 3.850 10 C -0.420 4.420 11 H 0.090 0.910 12 C 0.074 3.926 13 N -0.755 5.755 14 Si 0.917 3.083 15 H -0.263 1.263 16 H -0.269 1.269 17 H -0.254 1.254 18 H 0.106 0.894 19 H 0.106 0.894 20 H 0.137 0.863 21 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.260 1.451 -1.232 7.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.010 4.010 3 C -0.190 4.190 4 C -0.041 4.041 5 C -0.257 4.257 6 C -0.110 4.110 7 Br -0.018 7.018 8 C -0.157 4.157 9 C 0.143 3.857 10 C -0.447 4.447 11 H 0.108 0.892 12 C -0.150 4.150 13 N -0.376 5.376 14 Si 0.739 3.261 15 H -0.188 1.188 16 H -0.193 1.193 17 H -0.178 1.178 18 H 0.125 0.875 19 H 0.124 0.876 20 H 0.155 0.845 21 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.392 1.289 -1.122 6.616 hybrid contribution -0.109 -0.011 0.747 0.755 sum 6.283 1.278 -0.374 6.423 Atomic orbital electron populations 1.81033 1.12654 1.14903 1.09826 1.25712 0.92630 0.91251 0.91418 1.16926 0.83406 1.24495 0.94142 1.20427 0.93054 0.95390 0.95198 1.19988 0.93182 1.17096 0.95417 1.21455 0.86638 1.06148 0.96776 1.96467 1.08104 1.97934 1.99336 1.21302 0.93997 1.04749 0.95615 1.18345 0.90625 0.86485 0.90250 1.19804 1.01085 1.31310 0.92532 0.89189 1.26173 0.93935 0.92251 1.02644 1.69701 1.15357 1.18147 1.34405 0.86125 0.79763 0.80876 0.79318 1.18811 1.19326 1.17769 0.87547 0.87578 0.84538 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.94 18.54 41.84 0.78 -11.16 14 2 C 0.30 6.89 14.29 -22.47 -0.32 6.57 14 3 C -0.18 -4.13 5.94 -104.18 -0.62 -4.75 14 4 C -0.02 -0.38 9.76 -39.22 -0.38 -0.76 14 5 C -0.24 -4.65 9.70 -39.46 -0.38 -5.04 14 6 C -0.03 -0.64 6.20 -39.62 -0.25 -0.88 14 7 Br -0.10 -1.84 33.65 -68.01 -2.29 -4.13 14 8 C -0.14 -3.09 8.42 -38.87 -0.33 -3.42 14 9 C 0.15 3.56 5.74 -104.63 -0.60 2.96 14 10 C -0.42 -10.02 8.59 -37.86 -0.33 -10.35 14 11 H 0.09 2.16 7.37 -52.48 -0.39 1.77 14 12 C 0.07 1.64 5.14 -17.30 -0.09 1.55 14 13 N -0.75 -16.95 10.96 55.56 0.61 -16.34 14 14 Si 0.92 16.73 29.60 -169.99 -5.03 11.70 14 15 H -0.26 -4.83 7.11 56.52 0.40 -4.43 14 16 H -0.27 -4.70 7.11 56.52 0.40 -4.30 14 17 H -0.25 -4.68 7.11 56.52 0.40 -4.28 14 18 H 0.11 1.84 8.06 -52.49 -0.42 1.42 14 19 H 0.11 1.87 8.06 -52.48 -0.42 1.44 14 20 H 0.14 3.18 6.15 -52.49 -0.32 2.86 14 21 H 0.29 5.91 8.29 -40.82 -0.34 5.57 14 LS Contribution 225.78 15.07 3.40 3.40 Total: -1.00 -24.08 225.78 -6.52 -30.60 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -0.69 Total: 0.05 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -3.29 Total: -14.11 kcal Atomic # 7 Polarization: -28.89 SS G_CDS: 1.38 Total: -27.51 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.70 kcal Atomic # 35 Polarization: -1.84 SS G_CDS: -2.29 Total: -4.13 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -24.08 -6.52 -30.60 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034947358.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.845 kcal (2) G-P(sol) polarization free energy of solvation -24.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds