Wall clock time and date at job start Sun Mar 29 2020 23:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31328 * 1 3 3 Si 1.86802 * 119.99960 * 2 1 4 4 H 1.48492 * 109.46954 * 270.00100 * 3 2 1 5 5 H 1.48505 * 109.46958 * 30.00167 * 3 2 1 6 6 H 1.48499 * 109.47222 * 149.99831 * 3 2 1 7 7 C 1.39115 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99735 * 180.02562 * 7 2 1 9 9 N 1.36722 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00155 * 179.97438 * 9 7 2 11 11 O 1.21772 * 119.99864 * 359.97438 * 10 9 7 12 12 C 1.46179 * 120.00339 * 179.97438 * 10 9 7 13 13 C 1.35020 * 120.00267 * 173.26249 * 12 10 9 14 14 C 1.47086 * 120.00162 * 349.68301 * 13 12 10 15 15 C 1.39916 * 120.17703 * 315.08282 * 14 13 12 16 16 C 1.37838 * 119.83175 * 179.67605 * 15 14 13 17 17 C 1.38469 * 120.20429 * 0.61655 * 16 15 14 18 18 C 1.38327 * 120.37901 * 359.67909 * 17 16 15 19 19 C 1.38062 * 120.15639 * 359.97438 * 18 17 16 20 20 Cl 1.73600 * 120.10382 * 180.02562 * 19 18 17 21 21 H 0.96997 * 120.00144 * 359.97438 * 1 2 3 22 22 H 0.96997 * 120.00377 * 359.97438 * 9 7 2 23 23 H 1.08001 * 120.00325 * 352.99015 * 12 10 9 24 24 H 1.08003 * 120.00441 * 169.67641 * 13 12 10 25 25 H 1.07996 * 120.08385 * 359.97026 * 15 14 13 26 26 H 1.07992 * 119.89498 * 180.29382 * 16 15 14 27 27 H 1.08002 * 119.80710 * 179.69505 * 17 16 15 28 28 H 1.07995 * 119.91993 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.4947 2.0464 -1.4000 5 1 1.4447 2.6527 0.7001 6 1 3.5448 1.4402 0.7001 7 6 2.0089 -1.2048 0.0005 8 1 3.0889 -1.2047 0.0010 9 7 1.3253 -2.3888 0.0005 10 6 1.9991 -3.5560 0.0005 11 8 3.2168 -3.5560 0.0001 12 6 1.2682 -4.8220 0.0011 13 6 1.9363 -5.9873 -0.1361 14 6 3.3584 -5.9800 -0.5114 15 6 3.8096 -5.1481 -1.5420 16 6 5.1450 -5.1420 -1.8834 17 6 6.0378 -5.9655 -1.2184 18 6 5.6001 -6.7959 -0.2024 19 6 4.2671 -6.8090 0.1569 20 17 3.7194 -7.8512 1.4326 21 1 -0.4850 0.8400 0.0004 22 1 0.3553 -2.3889 0.0005 23 1 0.1943 -4.8255 0.1157 24 1 1.4265 -6.9249 0.0299 25 1 3.1141 -4.5089 -2.0654 26 1 5.4951 -4.4968 -2.6755 27 1 7.0819 -5.9592 -1.4945 28 1 6.3029 -7.4348 0.3116 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035272862.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:39 Heat of formation + Delta-G solvation = 2.256837 kcal Electronic energy + Delta-G solvation = -15485.092823 eV Core-core repulsion = 12720.379080 eV Total energy + Delta-G solvation = -2764.713743 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.18328 -37.82912 -36.05443 -34.36547 -32.94983 -31.41975 -30.23682 -29.11714 -25.46696 -23.20444 -22.02762 -20.92398 -18.65393 -17.81737 -16.88262 -15.99529 -14.98414 -14.93522 -14.42413 -14.00803 -13.64911 -13.51765 -13.06746 -12.81150 -12.56559 -11.99871 -11.66775 -11.29282 -11.18076 -11.06202 -10.95177 -10.49383 -10.37588 -10.35493 -9.69080 -9.40886 -8.60107 -8.26766 -8.00869 -7.46156 -6.61733 -3.91264 1.23590 1.77649 2.38257 2.51805 3.12980 3.17944 3.24094 4.05742 4.21324 4.31086 5.02536 5.15278 5.23602 5.25085 5.42004 5.67289 5.77444 5.94811 6.06107 6.20378 6.39306 6.55374 6.70019 6.80535 6.93453 7.09505 7.31183 7.37451 7.93955 8.48416 9.03278 9.40449 9.99496 10.54617 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.031511 B = 0.005807 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.355033 B = 4820.572517 C = 5307.114802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.023 3.977 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.291 4.291 8 H 0.108 0.892 9 N -0.538 5.538 10 C 0.441 3.559 11 O -0.586 6.586 12 C -0.157 4.157 13 C -0.093 4.093 14 C -0.027 4.027 15 C -0.013 4.013 16 C -0.132 4.132 17 C -0.110 4.110 18 C -0.133 4.133 19 C -0.026 4.026 20 Cl -0.086 7.086 21 H 0.276 0.724 22 H 0.393 0.607 23 H 0.119 0.881 24 H 0.125 0.875 25 H 0.123 0.877 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.250 -10.774 -2.147 11.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.181 4.181 3 Si 0.760 3.240 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.421 4.421 8 H 0.126 0.874 9 N -0.170 5.170 10 C 0.231 3.769 11 O -0.474 6.474 12 C -0.179 4.179 13 C -0.114 4.114 14 C -0.028 4.028 15 C -0.032 4.032 16 C -0.150 4.150 17 C -0.129 4.129 18 C -0.152 4.152 19 C -0.053 4.053 20 Cl -0.058 7.058 21 H 0.086 0.914 22 H 0.227 0.773 23 H 0.137 0.863 24 H 0.143 0.857 25 H 0.141 0.859 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.825 -10.620 -2.015 11.837 hybrid contribution -0.403 0.912 0.324 1.049 sum 4.422 -9.708 -1.691 10.800 Atomic orbital electron populations 1.69576 1.06199 1.28811 1.47981 1.25415 0.95653 1.00190 0.96794 0.85797 0.79366 0.80268 0.78604 1.20147 1.20708 1.19153 1.19836 0.93782 0.82298 1.46231 0.87412 1.41999 1.09447 1.05085 1.60471 1.17885 0.88074 0.83896 0.87050 1.90704 1.12945 1.86539 1.57215 1.23194 0.99372 0.93697 1.01630 1.21887 0.92423 0.97312 0.99813 1.18634 0.92990 0.95416 0.95743 1.21065 0.95740 0.92465 0.93900 1.20973 0.93523 0.99540 1.00957 1.20959 0.99221 0.96565 0.96149 1.20678 0.93457 1.01642 0.99415 1.20953 0.94127 0.96914 0.93301 1.98314 1.90387 1.66013 1.51060 0.91389 0.77307 0.86287 0.85726 0.85902 0.86250 0.86189 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.24 13.05 55.50 0.72 -22.51 15 2 C 0.02 0.60 5.50 -17.44 -0.10 0.51 15 3 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 15 4 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 6 H -0.27 -5.84 7.11 56.52 0.40 -5.43 15 7 C -0.29 -7.84 9.68 -15.05 -0.15 -7.99 15 8 H 0.11 3.04 7.15 -52.49 -0.38 2.66 15 9 N -0.54 -13.36 5.27 -12.32 -0.06 -13.42 15 10 C 0.44 10.32 6.78 -13.07 -0.09 10.23 15 11 O -0.59 -15.15 11.72 5.12 0.06 -15.09 15 12 C -0.16 -2.94 9.92 -37.54 -0.37 -3.31 15 13 C -0.09 -1.60 8.93 -37.14 -0.33 -1.93 15 14 C -0.03 -0.49 4.51 -105.03 -0.47 -0.97 15 15 C -0.01 -0.24 6.60 -39.10 -0.26 -0.50 15 16 C -0.13 -2.18 10.03 -39.64 -0.40 -2.58 15 17 C -0.11 -1.65 10.04 -39.46 -0.40 -2.05 15 18 C -0.13 -2.06 9.82 -39.61 -0.39 -2.44 15 19 C -0.03 -0.45 6.36 -38.99 -0.25 -0.70 15 20 Cl -0.09 -1.31 27.97 -51.86 -1.45 -2.76 15 21 H 0.28 6.81 8.31 -40.82 -0.34 6.47 15 22 H 0.39 9.35 7.87 -40.82 -0.32 9.03 15 23 H 0.12 1.87 8.06 -52.49 -0.42 1.44 15 24 H 0.13 1.79 7.94 -52.48 -0.42 1.38 15 25 H 0.12 2.40 7.10 -52.49 -0.37 2.02 15 26 H 0.12 1.73 8.06 -52.49 -0.42 1.31 15 27 H 0.12 1.42 8.06 -52.49 -0.42 1.00 15 28 H 0.12 1.58 8.06 -52.49 -0.42 1.16 15 LS Contribution 267.63 15.07 4.03 4.03 Total: -1.00 -29.05 267.63 -7.23 -36.28 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -2.31 Total: 9.94 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -3.20 Total: -11.73 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.66 Total: -35.93 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.06 Total: -15.09 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.45 Total: -2.76 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.05 -7.23 -36.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035272862.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.535 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds