Wall clock time and date at job start Sun Mar 29 2020 23:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.46507 * 120.00133 * 64.99915 * 12 9 7 14 14 C 1.52998 * 109.46903 * 164.99689 * 13 12 9 15 15 H 1.09001 * 109.52495 * 59.87081 * 14 13 12 16 16 C 1.53139 * 109.52066 * 179.97438 * 14 13 12 17 17 O 1.43080 * 109.15072 * 175.21691 * 16 14 13 18 18 C 1.43074 * 113.59305 * 302.04804 * 17 16 14 19 19 C 1.53147 * 109.15030 * 57.94762 * 18 17 16 20 20 O 1.43067 * 109.15372 * 304.69219 * 19 18 17 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 0.96998 * 119.99801 * 244.99599 * 12 9 7 23 23 H 1.08994 * 109.46611 * 284.99859 * 13 12 9 24 24 H 1.08996 * 109.46831 * 44.99705 * 13 12 9 25 25 H 1.09002 * 109.52388 * 295.11654 * 16 14 13 26 26 H 1.08999 * 109.52664 * 55.25062 * 16 14 13 27 27 H 1.08990 * 109.52871 * 177.85205 * 18 17 16 28 28 H 1.09008 * 109.52188 * 297.98804 * 18 17 16 29 29 H 1.08999 * 109.51946 * 64.59357 * 19 18 17 30 30 H 1.08995 * 109.52115 * 184.78546 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 7 2.2481 -3.9354 -0.0117 13 6 3.1392 -4.1140 1.1375 14 6 3.8044 -5.4896 1.0580 15 1 4.3799 -5.5631 0.1353 16 6 4.7366 -5.6773 2.2584 17 8 5.2679 -7.0056 2.2369 18 6 4.2637 -8.0244 2.2586 19 6 3.3314 -7.8366 1.0582 20 8 2.8002 -6.5084 1.0797 21 1 -0.4850 0.8401 -0.0004 22 1 2.3170 -4.5291 -0.7757 23 1 3.9052 -3.3388 1.1271 24 1 2.5620 -4.0423 2.0593 25 1 5.5530 -4.9573 2.2017 26 1 4.1778 -5.5224 3.1814 27 1 4.7376 -9.0043 2.2020 28 1 3.6894 -7.9502 3.1821 29 1 3.8905 -7.9904 0.1352 30 1 2.5150 -8.5565 1.1149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509808.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:06 Heat of formation + Delta-G solvation = -216.136568 kcal Electronic energy + Delta-G solvation = -17100.209133 eV Core-core repulsion = 14020.759928 eV Total energy + Delta-G solvation = -3079.449205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.91537 -37.46159 -37.21867 -36.12228 -35.97227 -35.14078 -32.32212 -29.38778 -28.23894 -26.42137 -24.01457 -22.16479 -20.97021 -19.33675 -18.30816 -18.01342 -17.58240 -17.14011 -16.93297 -16.58850 -16.07867 -15.94969 -15.68823 -14.95559 -14.53297 -14.18231 -13.92880 -13.58238 -13.27860 -12.96519 -12.89453 -12.49910 -12.44723 -12.34366 -12.31536 -12.29543 -11.66387 -11.26586 -11.20680 -10.99876 -10.21512 -10.11971 -8.72943 -7.46664 0.36952 1.37443 1.39649 1.52607 2.23417 2.60713 2.61642 2.77408 3.02929 3.60851 3.75526 3.83100 4.00352 4.08016 4.18809 4.35174 4.47497 4.55333 4.63397 4.64897 4.75008 4.89555 4.92440 5.11742 5.32269 5.91712 5.99241 6.10713 6.38611 6.80136 8.23446 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.039683 B = 0.006034 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.414207 B = 4639.516208 C = 5088.881272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.067 3.933 3 Si 0.994 3.006 4 H -0.251 1.251 5 H -0.267 1.267 6 H -0.247 1.247 7 C -1.038 5.038 8 H 0.126 0.874 9 S 2.721 3.279 10 O -1.045 7.045 11 O -1.047 7.047 12 N -1.117 6.117 13 C 0.126 3.874 14 C 0.053 3.947 15 H 0.086 0.914 16 C 0.032 3.968 17 O -0.391 6.391 18 C 0.020 3.980 19 C 0.016 3.984 20 O -0.398 6.398 21 H 0.298 0.702 22 H 0.414 0.586 23 H 0.102 0.898 24 H 0.066 0.934 25 H 0.132 0.868 26 H 0.065 0.935 27 H 0.130 0.870 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.455 -11.037 3.599 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.146 4.146 3 Si 0.812 3.188 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.170 1.170 7 C -1.172 5.172 8 H 0.144 0.856 9 S 2.822 3.178 10 O -1.035 7.035 11 O -1.038 7.038 12 N -0.876 5.876 13 C -0.001 4.001 14 C -0.007 4.007 15 H 0.104 0.896 16 C -0.045 4.045 17 O -0.309 6.309 18 C -0.056 4.056 19 C -0.061 4.061 20 O -0.318 6.318 21 H 0.108 0.892 22 H 0.248 0.752 23 H 0.120 0.880 24 H 0.085 0.915 25 H 0.150 0.850 26 H 0.084 0.916 27 H 0.148 0.852 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.306 -11.012 3.780 16.229 hybrid contribution 0.290 0.700 -0.415 0.864 sum 11.597 -10.313 3.365 15.879 Atomic orbital electron populations 1.70006 1.08926 1.32392 1.41402 1.26082 0.95376 1.05569 0.87538 0.85102 0.78657 0.74212 0.80801 1.17455 1.19150 1.17033 1.30871 1.07382 1.12198 1.66728 0.85566 0.99849 0.72621 0.73974 0.71386 1.93299 1.74615 1.88267 1.47297 1.93304 1.74971 1.88505 1.46998 1.55196 1.55257 1.49732 1.27448 1.21333 0.93988 0.96059 0.88687 1.23027 0.89900 0.87509 1.00235 0.89587 1.23285 0.99031 0.85296 0.96917 1.88062 1.32847 1.14920 1.95116 1.23435 0.91113 0.93061 0.98013 1.23494 0.99586 0.84190 0.98790 1.88184 1.32950 1.15347 1.95320 0.89152 0.75238 0.87972 0.91515 0.85048 0.91634 0.85223 0.92055 0.91432 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.70 13.19 21.45 0.28 -53.42 16 2 C 0.07 3.70 5.46 84.66 0.46 4.16 16 3 Si 0.99 40.58 29.54 68.60 2.03 42.61 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 6 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 7 C -1.04 -56.16 9.72 67.74 0.66 -55.50 16 8 H 0.13 5.95 7.81 -2.91 -0.02 5.93 16 9 S 2.72 147.83 5.02 -56.49 -0.28 147.55 16 10 O -1.05 -63.53 17.49 -128.00 -2.24 -65.77 16 11 O -1.05 -63.93 18.02 -128.00 -2.31 -66.24 16 12 N -1.12 -44.71 5.87 -187.49 -1.10 -45.81 16 13 C 0.13 4.09 5.92 86.38 0.51 4.60 16 14 C 0.05 1.36 2.93 30.64 0.09 1.45 16 15 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 16 C 0.03 0.68 6.34 72.03 0.46 1.14 16 17 O -0.39 -8.49 10.85 -136.00 -1.48 -9.96 16 18 C 0.02 0.35 7.05 72.03 0.51 0.86 16 19 C 0.02 0.31 7.05 72.03 0.51 0.82 16 20 O -0.40 -11.53 10.36 -136.00 -1.41 -12.94 16 21 H 0.30 16.09 8.31 -92.70 -0.77 15.32 16 22 H 0.41 14.77 8.65 -96.75 -0.84 13.93 16 23 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 24 H 0.07 2.39 7.75 -2.39 -0.02 2.37 16 25 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -79.17 273.79 -2.99 -82.17 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.32 Total: 24.28 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 3.19 Total: -42.46 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -0.82 Total: -99.23 kcal Atomic # 8 Polarization: -147.48 SS G_CDS: -7.43 Total: -154.91 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Atomic # 16 Polarization: 147.83 SS G_CDS: -0.28 Total: 147.55 kcal Total: -79.17 -2.99 -82.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509808.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.971 kcal (2) G-P(sol) polarization free energy of solvation -79.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds