Wall clock time and date at job start Sun Mar 29 2020 23:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48498 * 109.47153 * 269.99993 * 3 2 1 5 5 H 1.48502 * 109.47008 * 30.00127 * 3 2 1 6 6 H 1.48503 * 109.46999 * 149.99830 * 3 2 1 7 7 C 1.38693 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99776 * 0.02562 * 7 2 1 9 9 O 1.34802 * 120.00282 * 179.97438 * 7 2 1 10 10 C 1.35440 * 117.00251 * 185.05443 * 9 7 2 11 11 C 1.38544 * 121.04555 * 354.47803 * 10 9 7 12 12 C 1.38873 * 119.69238 * 179.97438 * 11 10 9 13 13 N 1.31257 * 121.83667 * 0.02562 * 12 11 10 14 14 C 1.33736 * 121.65031 * 359.97438 * 13 12 11 15 15 C 1.40766 * 120.98163 * 180.02562 * 14 13 12 16 16 F 1.35096 * 120.11877 * 359.95106 * 15 14 13 17 17 C 1.36325 * 119.76009 * 179.97438 * 15 14 13 18 18 C 1.39214 * 121.05221 * 0.02773 * 17 15 14 19 19 C 1.36483 * 120.81926 * 359.97397 * 18 17 15 20 20 F 1.35099 * 120.19001 * 179.72500 * 19 18 17 21 21 C 1.40407 * 119.62493 * 0.02562 * 19 18 17 22 22 H 0.96997 * 120.00026 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.15324 * 0.02562 * 11 10 9 24 24 H 1.08000 * 119.08335 * 180.02562 * 12 11 10 25 25 H 1.08006 * 119.47286 * 179.97438 * 17 15 14 26 26 H 1.07998 * 119.58676 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0087 -1.2011 0.0005 8 1 1.4687 -2.1364 0.0005 9 8 3.3567 -1.2011 0.0000 10 6 3.9716 -2.4033 -0.1057 11 6 3.2433 -3.5818 -0.0942 12 6 3.9026 -4.7990 -0.2050 13 7 5.2080 -4.8713 -0.3212 14 6 5.9727 -3.7743 -0.3394 15 6 7.3716 -3.8681 -0.4651 16 9 7.9633 -5.0782 -0.5687 17 6 8.1272 -2.7336 -0.4814 18 6 7.5380 -1.4768 -0.3749 19 6 6.1849 -1.3471 -0.2516 20 9 5.6270 -0.1214 -0.1435 21 6 5.3766 -2.4950 -0.2312 22 1 -0.4850 0.8400 -0.0004 23 1 2.1677 -3.5539 -0.0004 24 1 3.3251 -5.7116 -0.1954 25 1 9.2002 -2.8110 -0.5776 26 1 8.1592 -0.5935 -0.3900 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064875183.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:42 Heat of formation + Delta-G solvation = -63.221048 kcal Electronic energy + Delta-G solvation = -17768.786331 eV Core-core repulsion = 14449.436573 eV Total energy + Delta-G solvation = -3319.349757 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.49638 -48.46460 -40.27297 -38.18730 -36.26665 -32.97868 -31.34727 -30.39937 -28.72409 -25.99393 -23.70077 -23.38544 -21.27420 -19.15539 -18.11450 -17.87975 -16.97959 -16.27490 -15.94500 -15.68794 -14.95404 -14.83364 -14.51478 -14.24352 -14.00012 -13.59757 -13.33767 -12.86460 -12.78066 -12.70765 -12.28572 -12.09727 -11.16589 -11.01893 -10.94805 -10.45533 -9.89366 -9.49336 -9.09415 -8.84432 -8.61684 -7.36398 -6.85697 -4.48316 0.73270 1.07698 2.30056 3.02061 3.06947 3.14339 3.24278 3.93809 4.00760 4.34526 4.42771 4.55010 4.72096 4.74050 4.93998 5.15807 5.35768 5.60082 5.75644 5.96896 6.09830 6.19741 6.27806 6.43496 6.71666 6.85377 7.17866 7.33246 7.55047 8.44199 8.46447 9.00073 10.17881 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.030848 B = 0.008124 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.454859 B = 3445.659233 C = 4340.117334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.073 3.927 3 Si 0.901 3.099 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.248 1.248 7 C -0.385 4.385 8 H 0.117 0.883 9 O -0.168 6.168 10 C 0.188 3.812 11 C -0.306 4.306 12 C 0.182 3.818 13 N -0.544 5.544 14 C 0.171 3.829 15 C 0.082 3.918 16 F -0.129 7.129 17 C -0.105 4.105 18 C -0.182 4.182 19 C 0.147 3.853 20 F -0.120 7.120 21 C -0.156 4.156 22 H 0.289 0.711 23 H 0.147 0.853 24 H 0.152 0.848 25 H 0.142 0.858 26 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.018 -2.090 -0.478 10.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.171 1.171 7 C -0.460 4.460 8 H 0.134 0.866 9 O -0.065 6.065 10 C 0.125 3.875 11 C -0.329 4.329 12 C 0.019 3.981 13 N -0.262 5.262 14 C 0.046 3.954 15 C 0.061 3.939 16 F -0.108 7.108 17 C -0.125 4.125 18 C -0.202 4.202 19 C 0.126 3.874 20 F -0.098 7.098 21 C -0.161 4.161 22 H 0.099 0.901 23 H 0.164 0.836 24 H 0.170 0.830 25 H 0.159 0.841 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.244 -2.415 -0.515 10.537 hybrid contribution -0.485 1.473 0.079 1.553 sum 9.759 -0.942 -0.436 9.814 Atomic orbital electron populations 1.69605 1.05836 1.29749 1.42696 1.24595 0.95124 0.99493 0.94367 0.86209 0.80919 0.80469 0.79899 1.19170 1.20162 1.17086 1.21030 0.76072 0.97401 1.51471 0.86562 1.83511 1.23443 1.25395 1.74137 1.18975 0.89856 0.86365 0.92303 1.21876 1.02455 0.91979 1.16631 1.22486 0.89702 0.96878 0.88987 1.68059 1.06602 1.28674 1.22857 1.18277 0.92526 0.87816 0.96775 1.16869 0.88581 0.80854 1.07590 1.91465 1.83271 1.42380 1.93640 1.20427 1.00440 0.90337 1.01318 1.20329 0.92692 0.98263 1.08890 1.17310 0.91098 0.79674 0.99274 1.91584 1.85822 1.39797 1.92583 1.18036 0.91726 0.93457 1.12837 0.90050 0.83576 0.83042 0.84069 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.30 13.96 55.48 0.77 -21.52 15 2 C 0.07 1.89 5.49 -17.52 -0.10 1.79 15 3 Si 0.90 20.17 28.62 -169.99 -4.86 15.31 15 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 6 H -0.25 -5.65 7.11 56.52 0.40 -5.25 15 7 C -0.39 -9.99 9.97 30.90 0.31 -9.68 15 8 H 0.12 3.03 5.52 -52.49 -0.29 2.74 15 9 O -0.17 -4.18 6.86 1.08 0.01 -4.17 15 10 C 0.19 4.24 6.70 -38.28 -0.26 3.98 15 11 C -0.31 -6.26 9.22 -39.23 -0.36 -6.62 15 12 C 0.18 3.33 11.13 -17.56 -0.20 3.14 15 13 N -0.54 -10.78 10.20 -11.03 -0.11 -10.89 15 14 C 0.17 3.36 6.61 -84.82 -0.56 2.80 15 15 C 0.08 1.40 7.30 -39.32 -0.29 1.12 15 16 F -0.13 -2.21 17.12 2.25 0.04 -2.17 15 17 C -0.10 -1.48 9.91 -39.91 -0.40 -1.87 15 18 C -0.18 -2.71 9.93 -39.85 -0.40 -3.11 15 19 C 0.15 2.78 7.25 -39.40 -0.29 2.49 15 20 F -0.12 -2.48 15.54 2.25 0.03 -2.44 15 21 C -0.16 -3.22 5.76 -106.63 -0.61 -3.83 15 22 H 0.29 6.97 8.31 -40.82 -0.34 6.64 15 23 H 0.15 2.96 5.75 -52.49 -0.30 2.66 15 24 H 0.15 2.18 8.06 -52.49 -0.42 1.76 15 25 H 0.14 1.48 8.06 -52.48 -0.42 1.06 15 26 H 0.14 1.65 8.06 -52.49 -0.42 1.23 15 LS Contribution 246.64 15.07 3.72 3.72 Total: -1.00 -27.59 246.64 -4.54 -32.13 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -0.99 Total: -0.17 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -3.14 Total: -9.79 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.66 Total: -32.41 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: 0.01 Total: -4.17 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.07 Total: -4.61 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.86 Total: 15.31 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.59 -4.54 -32.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064875183.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.095 kcal (2) G-P(sol) polarization free energy of solvation -27.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds