Wall clock time and date at job start Sun Mar 29 2020 22:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46975 * 2 1 4 4 C 1.53121 * 109.52554 * 65.32245 * 3 2 1 5 5 C 1.53036 * 109.27709 * 177.57272 * 4 3 2 6 6 N 1.46846 * 109.51432 * 300.80434 * 5 4 3 7 7 C 1.46893 * 111.00122 * 185.84923 * 6 5 4 8 8 C 1.53006 * 109.47253 * 75.84581 * 7 6 5 9 9 H 1.08996 * 109.46829 * 305.21906 * 8 7 6 10 10 C 1.47194 * 109.46905 * 65.22287 * 8 7 6 11 11 N 7.00423 * 127.78094 * 48.98145 * 2 1 3 12 12 C 1.52997 * 109.46887 * 185.21894 * 8 7 6 13 13 C 1.50706 * 109.47187 * 175.00190 * 12 8 7 14 14 H 1.08001 * 119.99682 * 0.02562 * 13 12 8 15 15 C 1.37873 * 120.00250 * 179.97438 * 13 12 8 16 16 N 1.31514 * 119.99829 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00113 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47365 * 89.99887 * 17 15 13 19 19 H 1.48501 * 109.47465 * 209.99896 * 17 15 13 20 20 H 1.48504 * 109.47164 * 329.99819 * 17 15 13 21 21 C 1.46841 * 111.19938 * 61.74898 * 6 5 4 22 22 C 1.53040 * 109.52576 * 298.25936 * 21 6 5 23 23 H 1.08996 * 109.47549 * 300.00469 * 1 2 3 24 24 H 1.09007 * 109.47131 * 60.00901 * 1 2 3 25 25 H 1.08998 * 109.47098 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47549 * 239.99531 * 2 1 3 27 27 H 1.09002 * 109.46799 * 119.99748 * 2 1 3 28 28 H 1.09006 * 109.52063 * 305.12310 * 3 2 1 29 29 H 1.08998 * 109.50726 * 57.62245 * 4 3 2 30 30 H 1.09000 * 109.49196 * 297.50718 * 4 3 2 31 31 H 1.09002 * 109.45742 * 180.79676 * 5 4 3 32 32 H 1.08997 * 109.46583 * 60.81858 * 5 4 3 33 33 H 1.08996 * 109.47639 * 195.84864 * 7 6 5 34 34 H 1.08997 * 109.47162 * 315.84803 * 7 6 5 35 35 H 1.08997 * 109.47649 * 295.00027 * 12 8 7 36 36 H 1.08999 * 109.47146 * 55.00209 * 12 8 7 37 37 H 0.97002 * 120.00153 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.46348 * 58.27105 * 21 6 5 39 39 H 1.09001 * 109.46582 * 178.25414 * 21 6 5 40 40 H 1.08998 * 109.50487 * 179.11602 * 22 21 6 41 41 H 1.08995 * 109.50049 * 299.19623 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6425 2.1259 1.3114 5 6 2.2070 3.5481 1.3313 6 7 3.6695 3.4972 1.2090 7 6 4.2576 4.8344 1.3634 8 6 4.2478 5.2283 2.8418 9 1 3.2333 5.1486 3.2323 10 6 5.1358 4.3280 3.5953 11 7 5.8211 3.6332 4.1768 12 6 4.7392 6.6697 2.9887 13 6 4.6140 7.0989 4.4280 14 1 4.2234 6.4121 5.1642 15 6 4.9990 8.3680 4.8049 16 7 4.8892 8.7426 6.0608 17 14 5.6751 9.5558 3.5316 18 1 4.5589 10.3383 2.9425 19 1 6.6396 10.4803 4.1800 20 1 6.3646 8.7930 2.4600 21 6 4.0750 2.8877 -0.0640 22 6 3.5660 1.4458 -0.1258 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6041 1.9829 -0.8403 29 1 2.0461 1.5622 2.1524 30 1 0.5558 2.1646 1.3865 31 1 1.9377 4.0326 2.2698 32 1 1.7924 4.1152 0.4978 33 1 5.2840 4.8245 0.9968 34 1 3.6745 5.5560 0.7913 35 1 5.7830 6.7310 2.6809 36 1 4.1360 7.3250 2.3604 37 1 5.1597 9.6356 6.3260 38 1 3.6516 3.4580 -0.8908 39 1 5.1624 2.8923 -0.1388 40 1 3.8536 0.9987 -1.0773 41 1 4.0003 0.8712 0.6923 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076520934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:22 Heat of formation + Delta-G solvation = -2.325954 kcal Electronic energy + Delta-G solvation = -18414.439897 eV Core-core repulsion = 15714.036210 eV Total energy + Delta-G solvation = -2700.403687 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.40301 -36.82685 -35.07763 -33.57554 -32.08512 -30.86587 -30.33776 -27.24449 -24.83197 -23.41698 -22.38468 -21.42042 -21.00729 -19.71070 -16.88344 -16.72916 -15.94852 -15.07059 -14.78834 -14.45087 -14.29274 -13.96624 -13.91134 -13.44202 -13.03888 -13.00410 -12.43754 -12.32013 -12.25957 -12.00639 -11.86009 -11.50577 -11.32439 -11.24713 -11.18288 -11.10423 -10.73544 -10.64962 -10.43084 -10.29388 -10.15974 -9.87603 -9.68571 -9.29821 -8.60496 -8.19093 -6.09297 -4.09704 3.26333 3.35348 3.36377 3.73586 3.83376 3.98232 4.39363 4.58574 4.65242 4.71677 4.84658 5.10366 5.15187 5.22658 5.24127 5.25676 5.44363 5.45958 5.53447 5.54592 5.57481 5.70313 5.76055 5.80236 5.86310 5.93933 5.95156 5.98292 6.05733 6.11435 6.19839 6.26295 6.36092 6.40866 6.94171 7.13058 7.17814 7.23709 7.65693 8.42614 8.60091 8.94741 9.50662 11.03887 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.036080 B = 0.004404 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.872814 B = 6355.695677 C = 6385.462172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.089 4.089 4 C -0.112 4.112 5 C 0.052 3.948 6 N -0.540 5.540 7 C 0.060 3.940 8 C 0.023 3.977 9 H 0.104 0.896 10 C 0.256 3.744 11 N -0.475 5.475 12 C -0.006 4.006 13 C -0.527 4.527 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.264 1.264 21 C 0.057 3.943 22 C -0.111 4.111 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.025 0.975 36 H 0.032 0.968 37 H 0.264 0.736 38 H 0.031 0.969 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.921 -12.484 -16.316 22.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.107 4.107 4 C -0.150 4.150 5 C -0.076 4.076 6 N -0.265 5.265 7 C -0.069 4.069 8 C 0.001 3.999 9 H 0.122 0.878 10 C -0.061 4.061 11 N -0.151 5.151 12 C -0.045 4.045 13 C -0.564 4.564 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.704 3.296 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.070 4.070 22 C -0.149 4.149 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.677 -13.683 -14.936 21.328 hybrid contribution -0.199 1.592 -1.329 2.083 sum -6.876 -12.091 -16.265 21.402 Atomic orbital electron populations 1.21817 0.96038 1.01319 1.01916 1.21554 0.95759 0.96457 1.01828 1.21236 0.95575 0.95804 0.98104 1.21681 0.99892 0.95686 0.97704 1.22166 0.87165 0.96836 1.01411 1.61893 1.09305 1.21671 1.33642 1.22242 1.00228 0.88616 0.95808 1.18945 0.96908 0.93298 0.90783 0.87808 1.28692 0.93127 0.91836 0.92472 1.80989 1.11159 1.12639 1.10338 1.19645 0.96961 0.88830 0.99040 1.21034 1.43746 0.99508 0.92155 0.90783 1.24990 0.94929 0.98064 0.95146 1.69908 1.47798 1.19637 1.16213 0.86820 0.79407 0.81233 0.82113 1.20076 1.21320 1.18865 1.22058 1.00244 0.94893 0.89851 1.21636 0.95171 0.96385 1.01729 0.92340 0.92971 0.93089 0.92329 0.91929 0.91672 0.91096 0.91521 0.90033 0.94890 0.90469 0.92755 0.95715 0.95027 0.92588 0.95081 0.90917 0.91937 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.67 37.16 0.36 -0.79 16 2 C -0.12 -0.97 5.41 -26.73 -0.14 -1.12 16 3 C -0.09 -0.82 2.25 -90.50 -0.20 -1.02 16 4 C -0.11 -1.15 5.08 -26.65 -0.14 -1.29 16 5 C 0.05 0.61 5.29 -3.83 -0.02 0.59 16 6 N -0.54 -7.12 4.29 -234.68 -1.01 -8.12 16 7 C 0.06 0.85 4.37 -3.82 -0.02 0.84 16 8 C 0.02 0.41 2.27 -93.41 -0.21 0.20 16 9 H 0.10 1.81 6.70 -51.93 -0.35 1.46 16 10 C 0.26 5.40 13.67 -20.76 -0.28 5.12 16 11 N -0.47 -10.98 18.54 42.16 0.78 -10.20 16 12 C -0.01 -0.12 3.49 -27.88 -0.10 -0.22 16 13 C -0.53 -14.29 9.15 -34.44 -0.32 -14.61 16 14 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 16 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 17 Si 0.88 20.72 27.47 -169.99 -4.67 16.05 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 21 C 0.06 0.64 5.43 -3.84 -0.02 0.62 16 22 C -0.11 -1.11 5.38 -26.65 -0.14 -1.25 16 23 H 0.06 0.45 6.64 -51.93 -0.34 0.10 16 24 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.61 6.70 -51.93 -0.35 0.26 16 31 H 0.08 1.01 6.65 -51.93 -0.35 0.66 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 1.08 7.79 -51.93 -0.40 0.68 16 34 H 0.05 0.69 8.00 -51.93 -0.42 0.28 16 35 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 36 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.82 7.93 -51.93 -0.41 0.41 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -30.83 324.67 -7.75 -38.58 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -7.19 Total: -3.74 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.33 Total: -11.03 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.55 Total: -44.77 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.83 -7.75 -38.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076520934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.257 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds