Wall clock time and date at job start Sun Mar 29 2020 22:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46975 * 2 1 4 4 C 1.53121 * 109.52554 * 65.32245 * 3 2 1 5 5 C 1.53036 * 109.27709 * 177.57272 * 4 3 2 6 6 N 1.46846 * 109.51432 * 300.80434 * 5 4 3 7 7 C 1.46893 * 111.00122 * 185.84923 * 6 5 4 8 8 C 1.53006 * 109.47253 * 75.84581 * 7 6 5 9 9 H 1.08996 * 109.46829 * 305.21906 * 8 7 6 10 10 C 1.47194 * 109.46905 * 65.22287 * 8 7 6 11 11 N 7.00423 * 127.78094 * 48.98145 * 2 1 3 12 12 C 1.52997 * 109.46887 * 185.21894 * 8 7 6 13 13 C 1.50706 * 109.47187 * 175.00190 * 12 8 7 14 14 H 1.08001 * 119.99682 * 0.02562 * 13 12 8 15 15 C 1.37873 * 120.00250 * 179.97438 * 13 12 8 16 16 N 1.31514 * 119.99829 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00113 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47365 * 89.99887 * 17 15 13 19 19 H 1.48501 * 109.47465 * 209.99896 * 17 15 13 20 20 H 1.48504 * 109.47164 * 329.99819 * 17 15 13 21 21 C 1.46841 * 111.19938 * 61.74898 * 6 5 4 22 22 C 1.53040 * 109.52576 * 298.25936 * 21 6 5 23 23 H 1.08996 * 109.47549 * 300.00469 * 1 2 3 24 24 H 1.09007 * 109.47131 * 60.00901 * 1 2 3 25 25 H 1.08998 * 109.47098 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47549 * 239.99531 * 2 1 3 27 27 H 1.09002 * 109.46799 * 119.99748 * 2 1 3 28 28 H 1.09006 * 109.52063 * 305.12310 * 3 2 1 29 29 H 1.08998 * 109.50726 * 57.62245 * 4 3 2 30 30 H 1.09000 * 109.49196 * 297.50718 * 4 3 2 31 31 H 1.09002 * 109.45742 * 180.79676 * 5 4 3 32 32 H 1.08997 * 109.46583 * 60.81858 * 5 4 3 33 33 H 1.08996 * 109.47639 * 195.84864 * 7 6 5 34 34 H 1.08997 * 109.47162 * 315.84803 * 7 6 5 35 35 H 1.08997 * 109.47649 * 295.00027 * 12 8 7 36 36 H 1.08999 * 109.47146 * 55.00209 * 12 8 7 37 37 H 0.97002 * 120.00153 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.46348 * 58.27105 * 21 6 5 39 39 H 1.09001 * 109.46582 * 178.25414 * 21 6 5 40 40 H 1.08998 * 109.50487 * 179.11602 * 22 21 6 41 41 H 1.08995 * 109.50049 * 299.19623 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6425 2.1259 1.3114 5 6 2.2070 3.5481 1.3313 6 7 3.6695 3.4972 1.2090 7 6 4.2576 4.8344 1.3634 8 6 4.2478 5.2283 2.8418 9 1 3.2333 5.1486 3.2323 10 6 5.1358 4.3280 3.5953 11 7 5.8211 3.6332 4.1768 12 6 4.7392 6.6697 2.9887 13 6 4.6140 7.0989 4.4280 14 1 4.2234 6.4121 5.1642 15 6 4.9990 8.3680 4.8049 16 7 4.8892 8.7426 6.0608 17 14 5.6751 9.5558 3.5316 18 1 4.5589 10.3383 2.9425 19 1 6.6396 10.4803 4.1800 20 1 6.3646 8.7930 2.4600 21 6 4.0750 2.8877 -0.0640 22 6 3.5660 1.4458 -0.1258 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6041 1.9829 -0.8403 29 1 2.0461 1.5622 2.1524 30 1 0.5558 2.1646 1.3865 31 1 1.9377 4.0326 2.2698 32 1 1.7924 4.1152 0.4978 33 1 5.2840 4.8245 0.9968 34 1 3.6745 5.5560 0.7913 35 1 5.7830 6.7310 2.6809 36 1 4.1360 7.3250 2.3604 37 1 5.1597 9.6356 6.3260 38 1 3.6516 3.4580 -0.8908 39 1 5.1624 2.8923 -0.1388 40 1 3.8536 0.9987 -1.0773 41 1 4.0003 0.8712 0.6923 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076520934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:22 Heat of formation + Delta-G solvation = -20.723661 kcal Electronic energy + Delta-G solvation = -18415.237681 eV Core-core repulsion = 15714.036210 eV Total energy + Delta-G solvation = -2701.201471 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33000 -38.21913 -36.28687 -35.32311 -33.75414 -31.77462 -31.34215 -28.78276 -25.90405 -24.32292 -23.58791 -23.09983 -21.81309 -20.51685 -18.91295 -18.23526 -17.02990 -16.22562 -15.85029 -15.73590 -15.43236 -15.06682 -14.85474 -14.75536 -14.42398 -14.08406 -13.93799 -13.84605 -13.42379 -13.14077 -13.08227 -12.80145 -12.65712 -12.48205 -12.25027 -12.05588 -12.02539 -11.84120 -11.64439 -11.59308 -11.38700 -11.31799 -10.96015 -10.87696 -10.72424 -9.14239 -8.24119 -6.29865 1.42638 1.46034 1.56342 2.06285 2.14290 2.41669 2.97398 3.12374 3.34309 3.84416 3.90655 3.94162 4.11585 4.34712 4.40039 4.44092 4.49732 4.56183 4.66458 4.68800 4.73071 4.74991 4.80275 4.89284 4.92686 5.03705 5.11200 5.16590 5.20212 5.23763 5.26107 5.30487 5.37689 5.45743 5.51936 5.63051 5.65308 6.17930 6.29186 6.30563 6.77587 6.92038 7.34560 8.92984 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.036080 B = 0.004404 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.872814 B = 6355.695677 C = 6385.462172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.083 4.083 4 C -0.109 4.109 5 C 0.050 3.950 6 N -0.560 5.560 7 C 0.070 3.930 8 C 0.027 3.973 9 H 0.109 0.891 10 C 0.266 3.734 11 N -0.518 5.518 12 C -0.002 4.002 13 C -0.531 4.531 14 H 0.027 0.973 15 C 0.003 3.997 16 N -0.955 5.955 17 Si 0.950 3.050 18 H -0.256 1.256 19 H -0.295 1.295 20 H -0.237 1.237 21 C 0.058 3.942 22 C -0.109 4.109 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.027 0.973 36 H 0.062 0.938 37 H 0.265 0.735 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.457 -12.187 -19.853 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.102 4.102 4 C -0.147 4.147 5 C -0.077 4.077 6 N -0.285 5.285 7 C -0.059 4.059 8 C 0.005 3.995 9 H 0.127 0.873 10 C -0.050 4.050 11 N -0.196 5.196 12 C -0.041 4.041 13 C -0.569 4.569 14 H 0.045 0.955 15 C -0.194 4.194 16 N -0.595 5.595 17 Si 0.773 3.227 18 H -0.181 1.181 19 H -0.222 1.222 20 H -0.160 1.160 21 C -0.070 4.070 22 C -0.147 4.147 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.046 0.954 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.229 -13.418 -18.499 23.969 hybrid contribution -0.079 1.415 -0.133 1.423 sum -7.308 -12.003 -18.632 23.337 Atomic orbital electron populations 1.21805 0.95380 1.01758 1.02022 1.21527 0.96309 0.95809 1.01748 1.21203 0.95072 0.96330 0.97584 1.21655 1.00476 0.94852 0.97703 1.22204 0.86490 0.97657 1.01378 1.61809 1.10195 1.21174 1.35327 1.22103 1.01283 0.90002 0.92525 1.19056 0.96068 0.90862 0.93478 0.87327 1.29412 0.92603 0.91387 0.91639 1.80981 1.12665 1.14159 1.11795 1.19586 0.97795 0.91191 0.95569 1.21397 1.42477 0.98689 0.94366 0.95487 1.26053 0.95458 1.00475 0.97416 1.70094 1.50004 1.20367 1.19065 0.85668 0.79077 0.78490 0.79513 1.18072 1.22173 1.16026 1.22102 1.00228 0.95437 0.89218 1.21624 0.95579 0.95583 1.01880 0.92748 0.92297 0.92568 0.91453 0.92992 0.90658 0.93179 0.90305 0.91251 0.93342 0.89985 0.90199 0.95432 0.91998 0.92652 0.93506 0.91226 0.90164 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 71.98 0.70 -1.27 16 2 C -0.12 -1.70 5.41 30.59 0.17 -1.53 16 3 C -0.08 -1.34 2.25 -10.71 -0.02 -1.37 16 4 C -0.11 -2.09 5.08 30.65 0.16 -1.94 16 5 C 0.05 1.07 5.29 86.33 0.46 1.53 16 6 N -0.56 -13.58 4.29 -896.39 -3.84 -17.42 16 7 C 0.07 1.79 4.37 86.31 0.38 2.16 16 8 C 0.03 0.95 2.27 -12.60 -0.03 0.93 16 9 H 0.11 3.71 6.70 -2.39 -0.02 3.69 16 10 C 0.27 11.26 13.67 89.44 1.22 12.48 16 11 N -0.52 -24.44 18.54 20.00 0.37 -24.07 16 12 C 0.00 -0.10 3.49 29.85 0.10 0.01 16 13 C -0.53 -29.11 9.15 25.60 0.23 -28.87 16 14 H 0.03 1.68 7.84 -2.91 -0.02 1.66 16 15 C 0.00 0.14 5.47 84.65 0.46 0.61 16 16 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 17 Si 0.95 41.67 27.47 68.60 1.88 43.55 16 18 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 19 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 21 C 0.06 1.13 5.43 86.33 0.47 1.60 16 22 C -0.11 -1.94 5.38 30.65 0.16 -1.77 16 23 H 0.05 0.74 6.64 -2.39 -0.02 0.72 16 24 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.30 6.70 -2.39 -0.02 1.29 16 31 H 0.07 1.63 6.65 -2.39 -0.02 1.61 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 2.04 7.79 -2.39 -0.02 2.02 16 34 H 0.08 1.68 8.00 -2.39 -0.02 1.66 16 35 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 36 H 0.06 2.23 7.57 -2.39 -0.02 2.21 16 37 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 1.40 7.93 -2.39 -0.02 1.39 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -68.56 324.67 4.09 -64.47 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.92 Total: 10.20 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 4.46 Total: -17.45 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -3.17 Total: -100.77 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.88 Total: 43.55 kcal Total: -68.56 4.09 -64.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076520934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.749 kcal (2) G-P(sol) polarization free energy of solvation -68.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds