Wall clock time and date at job start Sun Mar 29 2020 22:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.90369 * 304.29323 * 3 2 1 5 5 C 1.53998 * 109.91641 * 183.19440 * 3 2 1 6 6 C 1.55024 * 104.92954 * 239.47478 * 5 3 2 7 7 H 1.09000 * 110.96545 * 96.37058 * 6 5 3 8 8 C 1.52998 * 110.62824 * 219.57491 * 6 5 3 9 9 C 1.54926 * 102.92728 * 337.89612 * 6 5 3 10 10 N 1.47895 * 109.91920 * 65.40139 * 3 2 1 11 11 C 1.46907 * 110.99787 * 265.19778 * 10 3 2 12 12 C 1.53005 * 109.46970 * 169.99895 * 11 10 3 13 13 H 1.09000 * 109.47238 * 54.99888 * 12 11 10 14 14 C 1.47199 * 109.47054 * 295.00223 * 12 11 10 15 15 N 4.69149 * 61.75914 * 72.40441 * 2 1 3 16 16 C 1.52996 * 109.46891 * 175.00035 * 12 11 10 17 17 C 1.50706 * 109.47098 * 184.99945 * 16 12 11 18 18 H 1.07997 * 119.99607 * 0.02562 * 17 16 12 19 19 C 1.37875 * 119.99805 * 179.97438 * 17 16 12 20 20 N 1.31510 * 119.99644 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00495 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47415 * 89.99315 * 21 19 17 23 23 H 1.48497 * 109.47442 * 209.99746 * 21 19 17 24 24 H 1.48507 * 109.47082 * 329.99722 * 21 19 17 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.08997 * 110.30829 * 358.33658 * 5 3 2 31 31 H 1.09000 * 110.30640 * 120.50450 * 5 3 2 32 32 H 1.08997 * 109.46822 * 174.90935 * 8 6 5 33 33 H 1.09007 * 109.47058 * 294.90895 * 8 6 5 34 34 H 1.09002 * 109.47222 * 54.90587 * 8 6 5 35 35 H 1.09009 * 110.66850 * 279.08616 * 9 6 5 36 36 H 1.08999 * 110.67022 * 155.95913 * 9 6 5 37 37 H 1.08995 * 109.46853 * 289.99803 * 11 10 3 38 38 H 1.09004 * 109.46730 * 49.99966 * 11 10 3 39 39 H 1.09000 * 109.47518 * 304.99959 * 16 12 11 40 40 H 1.08997 * 109.47289 * 65.00219 * 16 12 11 41 41 H 0.97006 * 120.00358 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6193 1.9849 -0.8467 5 6 3.5778 1.4553 -0.0807 6 6 4.0389 2.1953 1.2011 7 1 4.2960 1.4873 1.9890 8 6 5.2223 3.1158 0.8960 9 6 2.7884 3.0215 1.5932 10 7 1.6623 2.1105 1.2643 11 6 0.4075 2.8589 1.1098 12 6 -0.0806 3.3251 2.4829 13 1 0.7078 3.8951 2.9745 14 6 -0.4245 2.1535 3.3052 15 7 -0.6899 1.2494 3.9397 16 6 -1.3177 4.2087 2.3114 17 6 -1.7257 4.7673 3.6503 18 1 -1.1589 4.5173 4.5350 19 6 -2.8218 5.5982 3.7456 20 7 -3.1780 6.0852 4.9141 21 14 -3.8016 6.0311 2.2154 22 1 -4.8853 5.0342 2.0229 23 1 -4.3951 7.3831 2.3735 24 1 -2.9033 6.0201 1.0328 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.9646 0.4363 -0.0903 31 1 3.9055 1.9935 -0.9700 32 1 5.4728 3.6927 1.7862 33 1 6.0821 2.5156 0.5980 34 1 4.9551 3.7947 0.0862 35 1 2.7297 3.9350 1.0012 36 1 2.7981 3.2522 2.6584 37 1 0.5778 3.7256 0.4712 38 1 -0.3458 2.2152 0.6557 39 1 -1.0873 5.0283 1.6308 40 1 -2.1345 3.6147 1.9014 41 1 -3.9494 6.6695 4.9813 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080660057.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:20 Heat of formation + Delta-G solvation = 6.853376 kcal Electronic energy + Delta-G solvation = -18824.411169 eV Core-core repulsion = 16124.405529 eV Total energy + Delta-G solvation = -2700.005641 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.65354 -36.50026 -34.17170 -33.79226 -32.73299 -31.13910 -28.95206 -27.12951 -25.64214 -23.71740 -21.96842 -21.45525 -20.42194 -19.94610 -16.87883 -16.66381 -15.79087 -15.66324 -14.82597 -14.34308 -14.03269 -13.60839 -13.41206 -13.28182 -12.97311 -12.56733 -12.55054 -12.41368 -12.20499 -12.15211 -11.88749 -11.61040 -11.32673 -11.23875 -11.10657 -10.88424 -10.77303 -10.53339 -10.50782 -10.43551 -10.11155 -9.94794 -9.69241 -9.30590 -8.60883 -8.30061 -6.09735 -4.10147 3.27113 3.34577 3.34986 3.73175 3.82465 4.00922 4.38862 4.50655 4.59759 4.81888 4.86622 4.98479 5.23544 5.25237 5.28162 5.39014 5.44260 5.48207 5.56590 5.58242 5.62813 5.71050 5.76292 5.82204 5.90311 5.95842 6.00828 6.06306 6.12490 6.19639 6.25086 6.31489 6.35532 6.47561 6.95674 7.01987 7.14207 7.16542 7.64981 8.42094 8.59022 8.94194 9.50219 11.03435 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.023963 B = 0.005716 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.173755 B = 4897.379854 C = 5218.884992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.105 4.105 3 C 0.065 3.935 4 H 0.052 0.948 5 C -0.122 4.122 6 C -0.096 4.096 7 H 0.081 0.919 8 C -0.143 4.143 9 C 0.037 3.963 10 N -0.513 5.513 11 C 0.043 3.957 12 C 0.023 3.977 13 H 0.103 0.897 14 C 0.254 3.746 15 N -0.472 5.472 16 C -0.005 4.005 17 C -0.526 4.526 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.877 3.123 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.263 1.263 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.036 0.964 40 H 0.020 0.980 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.098 -6.439 -13.734 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C -0.043 4.043 4 H 0.070 0.930 5 C -0.160 4.160 6 C -0.115 4.115 7 H 0.099 0.901 8 C -0.200 4.200 9 C -0.091 4.091 10 N -0.236 5.236 11 C -0.086 4.086 12 C 0.001 3.999 13 H 0.121 0.879 14 C -0.063 4.063 15 N -0.148 5.148 16 C -0.044 4.044 17 C -0.564 4.564 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.188 1.188 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.463 -8.068 -12.272 19.923 hybrid contribution -0.537 1.337 -1.500 2.080 sum 12.926 -6.731 -13.772 20.051 Atomic orbital electron populations 1.21916 0.95988 1.01461 1.02181 1.21496 0.96074 0.95238 1.01456 1.22390 0.94605 0.95824 0.91490 0.93021 1.22607 0.94615 1.00981 0.97769 1.22129 0.94575 0.97324 0.97504 0.90073 1.21774 0.97440 0.99190 1.01626 1.23360 0.89628 0.94270 1.01828 1.64678 1.02224 1.27074 1.29673 1.22640 0.92153 0.97301 0.96499 1.18914 1.01022 0.88838 0.91107 0.87873 1.28692 0.91589 0.93170 0.92877 1.80993 1.10547 1.13024 1.10269 1.19646 0.91419 0.94289 0.99088 1.21026 1.13431 1.29006 0.92955 0.90784 1.24984 0.96887 0.95384 0.95829 1.69906 1.26838 1.33137 1.23654 0.86827 0.80781 0.77948 0.84046 1.20225 1.21262 1.18785 0.93197 0.93268 0.91271 0.91364 0.92351 0.91162 0.91578 0.92373 0.92737 0.92716 0.93267 0.89759 0.92874 0.89568 0.94635 0.96171 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 8.74 37.16 0.32 -1.61 16 2 C -0.10 -1.16 5.40 -26.73 -0.14 -1.31 16 3 C 0.07 0.73 2.61 -66.64 -0.17 0.55 16 4 H 0.05 0.56 7.77 -51.93 -0.40 0.16 16 5 C -0.12 -1.14 6.17 -25.14 -0.16 -1.29 16 6 C -0.10 -0.95 3.67 -88.53 -0.32 -1.27 16 7 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 8 C -0.14 -1.16 9.16 37.16 0.34 -0.82 16 9 C 0.04 0.43 5.35 -1.91 -0.01 0.42 16 10 N -0.51 -6.76 4.39 -222.57 -0.98 -7.74 16 11 C 0.04 0.62 3.58 -3.82 -0.01 0.61 16 12 C 0.02 0.42 2.24 -93.41 -0.21 0.21 16 13 H 0.10 1.82 7.18 -51.93 -0.37 1.44 16 14 C 0.25 5.34 13.67 -20.76 -0.28 5.05 16 15 N -0.47 -10.83 18.54 42.15 0.78 -10.04 16 16 C -0.01 -0.12 3.49 -27.88 -0.10 -0.22 16 17 C -0.53 -14.30 9.15 -34.44 -0.32 -14.62 16 18 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 19 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 20 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 21 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.02 5.94 -51.93 -0.31 0.72 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.62 7.69 -51.93 -0.40 0.22 16 31 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.43 8.11 -51.93 -0.42 0.01 16 35 H 0.05 0.55 7.72 -51.92 -0.40 0.15 16 36 H 0.08 1.05 7.68 -51.93 -0.40 0.65 16 37 H 0.05 0.70 7.83 -51.93 -0.41 0.29 16 38 H 0.09 1.25 5.24 -51.93 -0.27 0.98 16 39 H 0.04 0.73 7.20 -51.93 -0.37 0.36 16 40 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 324.70 15.07 4.89 4.89 Total: -1.00 -30.67 324.70 -7.45 -38.12 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -7.09 Total: -2.52 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.16 Total: -12.38 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 0.58 Total: -44.22 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.67 -7.45 -38.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080660057.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.978 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds