Wall clock time and date at job start Sun Mar 29 2020 22:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99679 * 2 1 4 4 C 1.52996 * 109.47585 * 66.04425 * 3 2 1 5 5 C 1.50698 * 109.47626 * 179.97438 * 4 3 2 6 6 H 1.08008 * 119.99657 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00475 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99774 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00464 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47131 * 89.99893 * 9 7 5 11 11 H 1.48496 * 109.47435 * 210.00355 * 9 7 5 12 12 H 1.48504 * 109.46749 * 330.00390 * 9 7 5 13 13 C 1.46893 * 110.99883 * 236.04741 * 2 1 3 14 14 C 1.50706 * 109.47176 * 293.94754 * 13 2 1 15 15 N 1.30499 * 126.36635 * 90.02697 * 14 13 2 16 16 N 1.28573 * 109.66501 * 180.02562 * 15 14 13 17 17 C 1.30671 * 109.63582 * 0.08233 * 16 15 14 18 18 N 1.35177 * 107.33140 * 359.55161 * 17 16 15 19 19 C 1.46804 * 111.14884 * 180.02562 * 18 17 16 20 20 C 1.54425 * 105.62632 * 343.37017 * 19 18 17 21 21 C 1.51344 * 142.72268 * 179.79126 * 17 16 15 22 22 H 1.09007 * 109.47214 * 183.95845 * 1 2 3 23 23 H 1.09002 * 109.47259 * 303.95383 * 1 2 3 24 24 H 1.08999 * 109.47697 * 63.95865 * 1 2 3 25 25 H 1.08998 * 109.47358 * 186.05143 * 3 2 1 26 26 H 1.09003 * 109.47119 * 306.04487 * 3 2 1 27 27 H 1.09007 * 109.47364 * 300.00577 * 4 3 2 28 28 H 1.09003 * 109.46841 * 59.99892 * 4 3 2 29 29 H 0.96993 * 119.99914 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.46739 * 173.95162 * 13 2 1 31 31 H 1.09000 * 109.47767 * 53.95421 * 13 2 1 32 32 H 1.08999 * 110.38924 * 224.22345 * 19 18 17 33 33 H 1.09007 * 110.00045 * 102.30896 * 19 18 17 34 34 H 1.09005 * 110.95842 * 267.25602 * 20 19 18 35 35 H 1.08997 * 110.96411 * 143.51418 * 20 19 18 36 36 H 1.09005 * 110.47338 * 315.16368 * 21 17 16 37 37 H 1.08996 * 110.47300 * 77.63902 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1719 3.4642 1.3184 6 1 2.7199 3.8323 0.4636 7 6 1.9660 4.2818 2.4094 8 7 1.2982 3.8337 3.4501 9 14 2.6353 6.0257 2.4094 10 1 1.6184 6.9462 1.8405 11 1 2.9499 6.4352 3.8017 12 1 3.8698 6.0820 1.5859 13 6 1.9954 -0.7659 -1.1376 14 6 1.6370 -2.2204 -0.9728 15 7 0.5566 -2.8058 -1.4123 16 7 0.5787 -4.0510 -1.0929 17 6 1.6749 -4.3157 -0.4328 18 7 2.3802 -3.1657 -0.3459 19 6 3.6372 -3.3693 0.3846 20 6 3.4710 -4.7097 1.1331 21 6 2.4260 -5.4352 0.2549 22 1 -0.3634 -1.0253 0.0709 23 1 -0.3634 0.5740 0.8524 24 1 -0.3634 0.4511 -0.9233 25 1 3.0796 1.3445 -0.1083 26 1 1.5610 1.9273 -0.8309 27 1 0.5470 2.0845 1.4265 28 1 2.0657 1.5016 2.1491 29 1 1.1536 4.4087 4.2178 30 1 3.0797 -0.6610 -1.1756 31 1 1.5611 -0.3872 -2.0628 32 1 3.7992 -2.5585 1.0949 33 1 4.4701 -3.4296 -0.3160 34 1 3.0887 -4.5487 2.1411 35 1 4.4104 -5.2619 1.1575 36 1 1.7495 -6.0236 0.8748 37 1 2.9187 -6.0716 -0.4802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085873138.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:42 Heat of formation + Delta-G solvation = 65.915475 kcal Electronic energy + Delta-G solvation = -18136.245847 eV Core-core repulsion = 15335.260988 eV Total energy + Delta-G solvation = -2800.984859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.38828 -38.86698 -38.10619 -35.28320 -33.60863 -31.95377 -30.71168 -29.22087 -28.13575 -27.03049 -24.62233 -23.44244 -22.00263 -21.83504 -21.35565 -18.63113 -18.04597 -17.24737 -16.60184 -16.46975 -16.27015 -15.97900 -15.35832 -14.89573 -14.44097 -14.26518 -14.18592 -14.03260 -13.69324 -13.37612 -12.98303 -12.84589 -12.68039 -12.54959 -12.46682 -12.40466 -12.15708 -11.84131 -11.47153 -11.36773 -11.27303 -10.95500 -10.54245 -10.12043 -9.38143 -8.19769 -6.31220 0.75172 1.41722 1.42905 1.53891 1.57951 1.72509 2.40896 2.77491 3.05012 3.14306 3.34502 3.53097 3.77617 3.91941 4.05195 4.20077 4.32234 4.42263 4.44885 4.54047 4.56361 4.62583 4.71454 4.85548 4.88609 4.94536 5.03574 5.07484 5.12461 5.23988 5.44533 5.60211 5.74246 5.88685 5.97278 6.07636 6.27345 6.86174 7.38283 7.68338 8.92522 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.036280 B = 0.004302 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.596625 B = 6506.324909 C = 6841.587119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.547 5.547 3 C 0.081 3.919 4 C 0.036 3.964 5 C -0.542 4.542 6 H 0.065 0.935 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.966 3.034 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.260 1.260 13 C 0.141 3.859 14 C 0.203 3.797 15 N -0.325 5.325 16 N -0.336 5.336 17 C 0.151 3.849 18 N -0.485 5.485 19 C 0.088 3.912 20 C -0.114 4.114 21 C -0.036 4.036 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.032 0.968 25 H 0.078 0.922 26 H 0.029 0.971 27 H -0.009 1.009 28 H -0.007 1.007 29 H 0.263 0.737 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.145 0.855 36 H 0.113 0.887 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.075 -17.585 -5.895 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.273 5.273 3 C -0.046 4.046 4 C -0.002 4.002 5 C -0.581 4.581 6 H 0.083 0.917 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.791 3.209 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.184 1.184 13 C 0.012 3.988 14 C -0.065 4.065 15 N -0.166 5.166 16 N -0.176 5.176 17 C -0.118 4.118 18 N -0.176 5.176 19 C -0.032 4.032 20 C -0.152 4.152 21 C -0.075 4.075 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.010 0.990 28 H 0.011 0.989 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.137 0.863 34 H 0.106 0.894 35 H 0.163 0.837 36 H 0.131 0.869 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.901 -17.796 -6.011 20.378 hybrid contribution 0.487 1.738 0.125 1.810 sum 8.388 -16.058 -5.886 19.048 Atomic orbital electron populations 1.22233 0.87431 1.00980 1.00442 1.61975 1.08419 1.15268 1.41601 1.22047 0.99383 0.85196 0.97960 1.18928 0.94998 0.93837 0.92405 1.21617 1.35306 0.98726 1.02404 0.91728 1.25962 0.95408 1.03228 0.95050 1.70119 1.42083 1.38272 1.06878 0.85428 0.79076 0.78964 0.77455 1.20036 1.20875 1.18350 1.20414 1.01802 0.83100 0.93534 1.24386 0.89679 0.94450 0.97975 1.74292 1.18565 1.00601 1.23093 1.73802 1.18902 1.07883 1.17049 1.26968 0.91446 0.92195 1.01197 1.47448 1.20159 1.08830 1.41191 1.22900 0.82235 1.01516 0.96574 1.22893 1.01618 0.92098 0.98573 1.20987 0.95955 0.92052 0.98524 0.92458 0.92565 0.94977 0.90377 0.95276 0.99029 0.98866 0.92820 0.86995 0.91148 0.88608 0.86286 0.89351 0.83743 0.86917 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 9.17 127.69 1.17 2.62 16 2 N -0.55 -20.35 4.75 -927.05 -4.41 -24.76 16 3 C 0.08 3.31 4.90 86.30 0.42 3.73 16 4 C 0.04 1.89 4.90 29.85 0.15 2.04 16 5 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 6 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.00 0.08 5.46 84.65 0.46 0.54 16 8 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 9 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 13 C 0.14 4.27 5.59 85.56 0.48 4.75 16 14 C 0.20 6.51 6.92 137.95 0.95 7.46 16 15 N -0.33 -12.09 11.50 -50.10 -0.58 -12.67 16 16 N -0.34 -11.82 12.22 -49.74 -0.61 -12.43 16 17 C 0.15 3.92 8.69 138.24 1.20 5.12 16 18 N -0.49 -12.34 3.63 -499.97 -1.81 -14.16 16 19 C 0.09 1.27 7.77 86.81 0.67 1.94 16 20 C -0.11 -0.88 7.17 31.61 0.23 -0.66 16 21 C -0.04 -0.43 6.85 30.59 0.21 -0.22 16 22 H 0.06 2.25 6.74 -2.38 -0.02 2.23 16 23 H 0.06 2.40 6.30 -2.39 -0.02 2.39 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.08 2.94 7.93 -2.39 -0.02 2.92 16 26 H 0.03 1.17 8.12 -2.39 -0.02 1.15 16 27 H -0.01 -0.50 6.47 -2.38 -0.02 -0.51 16 28 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.11 2.79 7.93 -2.39 -0.02 2.77 16 31 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 32 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.14 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -76.72 305.59 2.14 -74.58 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: 1.05 Total: 3.16 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 6.18 Total: -2.79 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -7.12 Total: -120.64 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -76.72 2.14 -74.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085873138.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.494 kcal (2) G-P(sol) polarization free energy of solvation -76.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds