Wall clock time and date at job start Sun Mar 29 2020 23:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.47151 * 120.98288 * 90.00215 * 12 9 7 14 14 C 1.53290 * 108.38915 * 129.43804 * 13 12 9 15 15 O 1.42965 * 109.21920 * 52.30333 * 14 13 12 16 16 C 1.42969 * 114.16371 * 297.41568 * 15 14 13 17 17 H 1.08995 * 109.51113 * 302.65877 * 16 15 14 18 18 C 1.53007 * 109.51027 * 182.55637 * 16 15 14 19 19 O 1.42906 * 109.46566 * 65.00425 * 18 16 15 20 20 C 1.47150 * 120.98142 * 269.71278 * 12 9 7 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.68027 * 249.16448 * 13 12 9 23 23 H 1.09005 * 109.68159 * 9.67271 * 13 12 9 24 24 H 1.08997 * 109.51632 * 172.22133 * 14 13 12 25 25 H 1.09001 * 109.51586 * 292.33113 * 14 13 12 26 26 H 1.08994 * 109.46830 * 184.99992 * 18 16 15 27 27 H 1.08990 * 109.47378 * 305.00700 * 18 16 15 28 28 H 0.96707 * 113.99322 * 179.97438 * 19 18 16 29 29 H 1.09000 * 109.68305 * 350.28174 * 20 12 9 30 30 H 1.09001 * 109.68005 * 110.83747 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 7 2.2481 -3.9354 -0.0117 13 6 2.7625 -4.4971 1.2474 14 6 2.6451 -6.0240 1.1794 15 8 3.2624 -6.4904 -0.0228 16 6 2.6449 -6.0136 -1.2208 17 1 1.5928 -6.2984 -1.2263 18 6 3.3462 -6.6250 -2.4355 19 8 3.1410 -8.0393 -2.4419 20 6 2.7581 -4.4900 -1.2757 21 1 -0.4850 0.8401 -0.0004 22 1 3.8075 -4.2145 1.3756 23 1 2.1750 -4.1200 2.0846 24 1 3.1454 -6.4664 2.0408 25 1 1.5930 -6.3088 1.1835 26 1 2.9343 -6.1940 -3.3479 27 1 4.4140 -6.4131 -2.3833 28 1 3.5585 -8.4938 -3.1864 29 1 2.1672 -4.1090 -2.1087 30 1 3.8026 -4.2068 -1.4059 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088092350.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:03 Heat of formation + Delta-G solvation = -181.352408 kcal Electronic energy + Delta-G solvation = -17499.762352 eV Core-core repulsion = 14421.821501 eV Total energy + Delta-G solvation = -3077.940850 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.071 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.14206 -36.55005 -35.38188 -34.22637 -34.01868 -33.09091 -31.78519 -27.63938 -26.16603 -25.04313 -22.64567 -20.66191 -18.82708 -17.59141 -17.27516 -16.51425 -16.39207 -15.24519 -15.16025 -14.89682 -14.47317 -14.17226 -13.84953 -13.52479 -13.42003 -12.69755 -12.04887 -12.01120 -11.44235 -11.36957 -11.24809 -10.94632 -10.84379 -10.63463 -10.36799 -10.24980 -10.17664 -9.97960 -9.71709 -9.28848 -8.95351 -8.18485 -6.73966 -5.36757 2.14442 3.03892 3.10637 3.17224 3.87516 3.99860 4.16011 4.43759 4.59812 5.11289 5.17080 5.25668 5.39461 5.42502 5.55331 5.61645 5.69798 5.83735 5.87263 5.97942 6.10435 6.27602 6.30280 6.68485 7.28224 7.36561 7.42909 7.60796 7.93302 8.84616 10.19648 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.037389 B = 0.006962 C = 0.006723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.704290 B = 4021.047607 C = 4163.861121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.262 1.262 7 C -1.019 5.019 8 H 0.102 0.898 9 S 2.714 3.286 10 O -1.001 7.001 11 O -1.002 7.002 12 N -1.013 6.013 13 C 0.087 3.913 14 C 0.050 3.950 15 O -0.373 6.373 16 C 0.078 3.922 17 H 0.068 0.932 18 C 0.086 3.914 19 O -0.567 6.567 20 C 0.098 3.902 21 H 0.291 0.709 22 H 0.067 0.933 23 H 0.103 0.897 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.376 0.624 29 H 0.104 0.896 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.812 -8.973 -2.619 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.746 3.254 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.153 5.153 8 H 0.121 0.879 9 S 2.816 3.184 10 O -0.991 6.991 11 O -0.992 6.992 12 N -0.848 5.848 13 C -0.039 4.039 14 C -0.028 4.028 15 O -0.292 6.292 16 C 0.019 3.981 17 H 0.086 0.914 18 C 0.008 3.992 19 O -0.371 6.371 20 C -0.029 4.029 21 H 0.102 0.898 22 H 0.086 0.914 23 H 0.121 0.879 24 H 0.119 0.881 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.223 0.777 29 H 0.122 0.878 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.508 -9.006 -2.061 11.301 hybrid contribution 1.109 1.362 -0.474 1.819 sum 7.617 -7.644 -2.536 11.085 Atomic orbital electron populations 1.69896 1.06792 1.30816 1.40040 1.24773 0.94491 1.00870 0.88470 0.86141 0.80163 0.79932 0.79198 1.19161 1.19912 1.18650 1.30587 1.06139 1.11662 1.66880 0.87926 1.00572 0.72046 0.72973 0.72857 1.93350 1.72601 1.87483 1.45701 1.93345 1.72668 1.87525 1.45699 1.58309 1.62645 1.54450 1.09416 1.21949 1.00495 0.93968 0.87508 1.22943 0.98310 0.94046 0.87494 1.87914 1.56535 1.71476 1.13246 1.22363 0.97510 0.93161 0.85106 0.91361 1.22129 0.99554 0.81418 0.96144 1.86548 1.78835 1.19516 1.52235 1.21673 1.00777 0.92478 0.87959 0.89819 0.91444 0.87905 0.88132 0.92806 0.91652 0.92567 0.77728 0.87822 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.75 13.19 55.43 0.73 -24.01 16 2 C 0.13 3.66 5.46 -17.82 -0.10 3.57 16 3 Si 0.92 20.44 29.54 -169.99 -5.02 15.42 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -1.02 -27.93 9.75 30.60 0.30 -27.63 16 8 H 0.10 2.59 7.81 -52.49 -0.41 2.18 16 9 S 2.71 71.77 5.03 -107.50 -0.54 71.23 16 10 O -1.00 -28.85 16.64 -57.17 -0.95 -29.80 16 11 O -1.00 -28.76 16.63 -57.17 -0.95 -29.72 16 12 N -1.01 -20.86 3.35 -113.30 -0.38 -21.24 16 13 C 0.09 1.52 6.71 -3.54 -0.02 1.50 16 14 C 0.05 0.77 6.98 37.31 0.26 1.03 16 15 O -0.37 -6.20 10.35 -39.97 -0.41 -6.61 16 16 C 0.08 1.25 3.04 -26.79 -0.08 1.17 16 17 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 18 C 0.09 1.06 6.72 37.16 0.25 1.31 16 19 O -0.57 -7.07 13.63 -39.97 -0.54 -7.61 16 20 C 0.10 1.71 5.98 -3.75 -0.02 1.69 16 21 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 22 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.10 1.85 6.95 -51.93 -0.36 1.49 16 24 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.38 2.61 9.12 45.56 0.42 3.03 16 29 H 0.10 1.85 6.94 -51.93 -0.36 1.49 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 270.43 15.07 4.08 4.08 Total: -1.00 -36.17 270.43 -6.22 -42.40 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -2.81 Total: 3.24 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 0.58 Total: -17.36 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.35 Total: -45.25 kcal Atomic # 8 Polarization: -70.88 SS G_CDS: -2.86 Total: -73.74 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 71.77 SS G_CDS: -0.54 Total: 71.23 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -36.17 -6.22 -42.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088092350.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.957 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds