Wall clock time and date at job start Sun Mar 29 2020 23:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99870 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40184 * 293.54149 * 9 7 2 11 11 O 1.42096 * 106.40178 * 66.46061 * 9 7 2 12 12 N 1.65602 * 107.21768 * 180.02562 * 9 7 2 13 13 C 1.47159 * 120.98164 * 89.99500 * 12 9 7 14 14 C 1.53288 * 108.38614 * 230.51207 * 13 12 9 15 15 O 1.42959 * 109.22509 * 307.70370 * 14 13 12 16 16 C 1.42962 * 114.16975 * 62.58134 * 15 14 13 17 17 H 1.08998 * 109.51371 * 57.34013 * 16 15 14 18 18 C 1.52995 * 109.51357 * 177.44417 * 16 15 14 19 19 O 1.42891 * 109.47246 * 294.99779 * 18 16 15 20 20 C 1.47149 * 120.98139 * 269.72249 * 12 9 7 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.67815 * 350.24084 * 13 12 9 23 23 H 1.09004 * 109.67459 * 110.79068 * 13 12 9 24 24 H 1.09007 * 109.50975 * 67.62566 * 14 13 12 25 25 H 1.08998 * 109.51150 * 187.77295 * 14 13 12 26 26 H 1.09005 * 109.47294 * 55.00052 * 18 16 15 27 27 H 1.09005 * 109.47100 * 174.99607 * 18 16 15 28 28 H 0.96708 * 114.00141 * 180.02562 * 19 18 16 29 29 H 1.09005 * 109.67913 * 249.21068 * 20 12 9 30 30 H 1.09002 * 109.68099 * 9.75698 * 20 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4518 -2.7956 1.2495 11 8 0.4509 -2.7950 -1.2500 12 7 2.2483 -3.9355 -0.0005 13 6 2.7628 -4.4914 1.2611 14 6 4.2945 -4.4937 1.1994 15 8 4.7162 -5.1461 -0.0007 16 6 4.2941 -4.4940 -1.2009 17 1 4.6601 -3.4673 -1.2054 18 6 4.8540 -5.2415 -2.4127 19 8 6.2798 -5.1474 -2.4134 20 6 2.7582 -4.4956 -1.2621 21 1 -0.4850 0.8401 0.0004 22 1 2.4299 -3.8754 2.0964 23 1 2.3990 -5.5110 1.3883 24 1 4.6605 -3.4669 1.2035 25 1 4.6928 -5.0265 2.0628 26 1 4.5590 -6.2896 -2.3612 27 1 4.4601 -4.7977 -3.3271 28 1 6.7035 -5.5996 -3.1559 29 1 2.3940 -5.5156 -1.3846 30 1 2.4223 -3.8824 -2.0983 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088092351.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:04 Heat of formation + Delta-G solvation = -181.499555 kcal Electronic energy + Delta-G solvation = -17611.550318 eV Core-core repulsion = 14533.603087 eV Total energy + Delta-G solvation = -3077.947231 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 251.071 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.09343 -36.53025 -35.36981 -34.22096 -34.00899 -33.09140 -31.73372 -27.61136 -26.17554 -25.02305 -22.62024 -20.69617 -18.71025 -17.59467 -17.32309 -16.48230 -16.37125 -15.18532 -15.13099 -14.88270 -14.64102 -14.13317 -13.84536 -13.49947 -13.28546 -12.67045 -12.05965 -11.99090 -11.44178 -11.39625 -11.23217 -10.92168 -10.83612 -10.64870 -10.36567 -10.21180 -10.19869 -9.94229 -9.79369 -9.27925 -8.89790 -8.19079 -6.74093 -5.37411 2.14746 3.05939 3.10332 3.15925 3.90641 3.99194 4.18132 4.44391 4.59836 5.13131 5.19786 5.27454 5.41387 5.42088 5.56512 5.63503 5.70504 5.84520 5.86290 5.98694 6.10699 6.29243 6.30558 6.68212 7.27839 7.39157 7.43226 7.62843 7.91640 8.84227 10.19570 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.025093 B = 0.008485 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.600601 B = 3299.174720 C = 3690.251423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.264 1.264 7 C -1.021 5.021 8 H 0.101 0.899 9 S 2.714 3.286 10 O -1.001 7.001 11 O -1.002 7.002 12 N -1.014 6.014 13 C 0.092 3.908 14 C 0.048 3.952 15 O -0.374 6.374 16 C 0.076 3.924 17 H 0.074 0.926 18 C 0.085 3.915 19 O -0.566 6.566 20 C 0.103 3.897 21 H 0.292 0.708 22 H 0.100 0.900 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.376 0.624 29 H 0.068 0.932 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.100 -7.760 -2.553 12.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.201 1.201 5 H -0.188 1.188 6 H -0.188 1.188 7 C -1.154 5.154 8 H 0.119 0.881 9 S 2.816 3.184 10 O -0.991 6.991 11 O -0.992 6.992 12 N -0.849 5.849 13 C -0.035 4.035 14 C -0.030 4.030 15 O -0.292 6.292 16 C 0.016 3.984 17 H 0.092 0.908 18 C 0.007 3.993 19 O -0.371 6.371 20 C -0.024 4.024 21 H 0.102 0.898 22 H 0.118 0.882 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.222 0.778 29 H 0.086 0.914 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.938 -7.658 -1.998 11.209 hybrid contribution 0.880 1.133 -0.470 1.510 sum 8.818 -6.525 -2.468 11.244 Atomic orbital electron populations 1.69886 1.06785 1.30926 1.39897 1.24754 0.94473 1.00806 0.88448 0.86198 0.79892 0.79625 0.79857 1.20053 1.18813 1.18815 1.30571 1.06014 1.11752 1.67082 0.88087 1.00592 0.72085 0.72886 0.72876 1.93357 1.72593 1.87497 1.45649 1.93352 1.72594 1.87523 1.45723 1.58375 1.62299 1.54749 1.09459 1.21902 0.94293 1.00066 0.87210 1.22977 0.94263 0.98289 0.87465 1.87900 1.76087 1.51966 1.13272 1.22571 0.93654 0.97184 0.84942 0.90849 1.22142 0.81243 0.99670 0.96264 1.86553 1.19159 1.79070 1.52301 1.21802 0.92597 1.00267 0.87744 0.89753 0.88213 0.91589 0.92383 0.88284 0.92699 0.91709 0.77785 0.91407 0.88132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.71 13.19 55.43 0.73 -23.98 16 2 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 3 Si 0.92 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 7 C -1.02 -27.85 9.75 30.60 0.30 -27.55 16 8 H 0.10 2.54 7.81 -52.49 -0.41 2.13 16 9 S 2.71 71.75 4.98 -107.50 -0.54 71.21 16 10 O -1.00 -28.92 16.82 -57.17 -0.96 -29.88 16 11 O -1.00 -28.80 16.81 -57.17 -0.96 -29.76 16 12 N -1.01 -20.84 3.34 -112.82 -0.38 -21.21 16 13 C 0.09 1.60 6.57 -3.53 -0.02 1.58 16 14 C 0.05 0.74 6.98 37.31 0.26 1.00 16 15 O -0.37 -6.23 10.35 -39.97 -0.41 -6.64 16 16 C 0.08 1.22 3.07 -26.36 -0.08 1.14 16 17 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 18 C 0.09 1.06 6.72 37.15 0.25 1.31 16 19 O -0.57 -7.18 13.62 -39.97 -0.54 -7.72 16 20 C 0.10 1.79 5.89 -3.32 -0.02 1.77 16 21 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 22 H 0.10 1.78 7.25 -51.93 -0.38 1.41 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 25 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.38 2.69 9.12 45.56 0.42 3.11 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.10 1.78 7.24 -51.93 -0.38 1.40 16 LS Contribution 271.13 15.07 4.09 4.09 Total: -1.00 -36.16 271.13 -6.25 -42.41 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -2.84 Total: 3.18 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 0.59 Total: -17.16 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.35 Total: -45.19 kcal Atomic # 8 Polarization: -71.12 SS G_CDS: -2.88 Total: -74.00 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 71.75 SS G_CDS: -0.54 Total: 71.21 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -36.16 -6.25 -42.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088092351.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.088 kcal (2) G-P(sol) polarization free energy of solvation -36.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds