Wall clock time and date at job start Sun Mar 29 2020 22:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46670 * 2 1 4 4 C 1.52998 * 109.47089 * 119.99334 * 2 1 3 5 5 N 1.46899 * 109.47307 * 63.34975 * 4 2 1 6 6 C 1.46894 * 111.00346 * 200.00778 * 5 4 2 7 7 C 1.53010 * 109.47076 * 72.31502 * 6 5 4 8 8 C 1.47196 * 109.47131 * 183.86700 * 7 6 5 9 9 N 6.65314 * 82.62072 * 118.09943 * 2 1 3 10 10 C 1.46899 * 110.99880 * 76.05149 * 5 4 2 11 11 C 1.53002 * 109.47062 * 199.63507 * 10 5 4 12 12 C 1.50697 * 115.55110 * 54.29509 * 11 10 5 13 13 H 1.07996 * 120.00676 * 272.20452 * 12 11 10 14 14 C 1.37878 * 119.99502 * 91.92873 * 12 11 10 15 15 N 1.31524 * 119.99927 * 173.38868 * 14 12 11 16 16 Si 1.86796 * 120.00232 * 353.38602 * 14 12 11 17 17 H 1.48509 * 109.47273 * 94.10419 * 16 14 12 18 18 H 1.48505 * 109.47603 * 214.09963 * 16 14 12 19 19 H 1.48497 * 109.47300 * 334.10585 * 16 14 12 20 20 C 1.53002 * 117.49875 * 199.97407 * 11 10 5 21 21 C 1.53007 * 117.49663 * 268.63243 * 11 10 5 22 22 H 1.08998 * 109.47558 * 304.65207 * 1 2 3 23 23 H 1.08998 * 109.47044 * 64.65788 * 1 2 3 24 24 H 1.09005 * 109.46852 * 184.65344 * 1 2 3 25 25 H 1.09000 * 109.47868 * 239.99847 * 2 1 3 26 26 H 1.09003 * 109.46889 * 180.02562 * 3 2 1 27 27 H 1.09009 * 109.46846 * 299.99468 * 3 2 1 28 28 H 1.08994 * 109.47658 * 59.99778 * 3 2 1 29 29 H 1.08999 * 109.47436 * 303.34439 * 4 2 1 30 30 H 1.09003 * 109.47085 * 183.34946 * 4 2 1 31 31 H 1.08997 * 109.47186 * 192.31240 * 6 5 4 32 32 H 1.08995 * 109.47330 * 312.31503 * 6 5 4 33 33 H 1.08999 * 109.46721 * 303.85990 * 7 6 5 34 34 H 1.08997 * 109.47104 * 63.85941 * 7 6 5 35 35 H 1.08997 * 109.46815 * 79.63631 * 10 5 4 36 36 H 1.08994 * 109.47215 * 319.63073 * 10 5 4 37 37 H 0.97001 * 119.99762 * 174.99792 * 15 14 12 38 38 H 1.09006 * 117.49769 * 215.00182 * 20 11 10 39 39 H 1.09000 * 117.49846 * 0.02562 * 20 11 10 40 40 H 1.08998 * 117.50127 * 359.96826 * 21 11 10 41 41 H 1.08998 * 117.50049 * 144.97495 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6175 -2.1275 1.2097 6 6 1.6573 -2.7271 2.5501 7 6 0.5084 -2.1693 3.3927 8 6 0.6027 -2.6989 4.7629 9 7 0.6755 -3.1077 5.8203 10 6 2.4372 -2.8969 0.2642 11 6 1.6996 -4.1803 -0.1232 12 6 0.3046 -3.9911 -0.6608 13 1 -0.5350 -3.9524 0.0174 14 6 0.1007 -3.8619 -2.0182 15 7 -1.1231 -3.8275 -2.4991 16 14 1.5623 -3.7354 -3.1745 17 1 1.9012 -5.0850 -3.6935 18 1 1.2201 -2.8405 -4.3091 19 1 2.7277 -3.1805 -2.4403 20 6 2.5316 -5.3252 -0.7043 21 6 1.9699 -5.4310 0.7157 22 1 -0.3634 0.5843 0.8453 23 1 -0.3633 0.4399 -0.9288 24 1 -0.3633 -1.0243 0.0834 25 1 1.8934 -0.5138 -0.8899 26 1 3.1299 1.4426 -0.0005 27 1 1.6765 1.9564 -0.8901 28 1 1.6765 1.9565 0.8899 29 1 1.6285 -0.2430 2.1383 30 1 3.1283 -0.6694 1.2798 31 1 1.5551 -3.8091 2.4673 32 1 2.6075 -2.4874 3.0273 33 1 0.5717 -1.0815 3.4186 34 1 -0.4431 -2.4675 2.9525 35 1 3.3884 -3.1515 0.7316 36 1 2.6195 -2.2991 -0.6287 37 1 -1.2684 -3.6640 -3.4441 38 1 2.0699 -5.9417 -1.4757 39 1 3.6045 -5.1644 -0.8103 40 1 2.6735 -5.3397 1.5432 41 1 1.1386 -6.1169 0.8789 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255481.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:24 Heat of formation + Delta-G solvation = 46.232575 kcal Electronic energy + Delta-G solvation = -19309.932275 eV Core-core repulsion = 16611.634245 eV Total energy + Delta-G solvation = -2698.298031 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.62391 -36.62151 -36.13873 -34.03869 -31.94219 -30.89183 -26.80119 -26.62032 -25.50598 -24.64874 -21.68775 -21.29733 -19.58316 -18.84237 -17.33122 -16.12201 -15.55697 -15.18164 -14.65028 -14.63145 -14.06772 -13.82593 -13.31932 -13.27074 -12.90389 -12.62636 -12.38170 -12.34229 -12.18338 -11.87599 -11.63779 -11.38714 -11.32383 -11.08584 -10.72893 -10.53388 -10.47853 -10.40484 -10.30353 -10.00768 -9.91848 -9.56116 -8.92053 -8.47125 -8.40013 -7.64160 -5.99008 -3.96230 2.86410 2.92592 3.33290 3.43872 3.45571 3.97546 4.51338 4.56103 4.98731 5.12401 5.25473 5.27554 5.31521 5.39642 5.55969 5.65446 5.73255 5.83447 5.89460 5.97281 6.00320 6.09210 6.11880 6.21150 6.22211 6.23710 6.26284 6.42867 6.46496 6.53291 6.64160 6.74754 6.80667 7.08418 7.17740 7.24048 7.60226 7.67428 7.74782 7.88587 8.65152 9.07893 9.65926 11.13481 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.009185 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.304297 B = 3047.749780 C = 3952.333201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 C -0.146 4.146 4 C 0.057 3.943 5 N -0.505 5.505 6 C 0.061 3.939 7 C -0.027 4.027 8 C 0.218 3.782 9 N -0.455 5.455 10 C 0.095 3.905 11 C 0.014 3.986 12 C -0.450 4.450 13 H 0.081 0.919 14 C 0.077 3.923 15 N -0.902 5.902 16 Si 0.871 3.129 17 H -0.285 1.285 18 H -0.297 1.297 19 H -0.262 1.262 20 C -0.205 4.205 21 C -0.188 4.188 22 H 0.038 0.962 23 H 0.039 0.961 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.024 0.976 31 H 0.092 0.908 32 H 0.028 0.972 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.010 0.990 36 H 0.073 0.927 37 H 0.261 0.739 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.408 7.370 5.319 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.071 4.071 5 N -0.228 5.228 6 C -0.068 4.068 7 C -0.067 4.067 8 C -0.100 4.100 9 N -0.133 5.133 10 C -0.033 4.033 11 C 0.013 3.987 12 C -0.488 4.488 13 H 0.099 0.901 14 C -0.124 4.124 15 N -0.540 5.540 16 Si 0.700 3.300 17 H -0.211 1.211 18 H -0.225 1.225 19 H -0.187 1.187 20 C -0.243 4.243 21 C -0.225 4.225 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.111 0.889 32 H 0.046 0.954 33 H 0.122 0.878 34 H 0.141 0.859 35 H 0.028 0.972 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.918 6.704 6.560 11.091 hybrid contribution 1.658 0.271 -1.007 1.958 sum 7.576 6.975 5.553 11.700 Atomic orbital electron populations 1.21720 0.93959 1.04337 0.99504 1.21060 0.97512 0.94143 0.98188 1.21849 1.00183 0.96954 1.01390 1.22238 0.96789 0.89631 0.98447 1.61591 1.55041 1.00550 1.05585 1.21991 0.94467 1.01283 0.89102 1.19383 1.03604 1.01218 0.82503 1.29390 0.92623 0.93013 0.94972 1.81178 1.09351 1.09757 1.13004 1.21905 0.91186 0.95694 0.94472 1.19443 0.96107 0.85000 0.98179 1.20067 0.89028 1.48062 0.91634 0.90138 1.24869 0.94894 0.94875 0.97756 1.69905 1.19944 1.50180 1.13998 0.87021 0.84484 0.77723 0.80759 1.21115 1.22457 1.18694 1.22962 0.97650 1.06571 0.97100 1.22902 1.02254 1.05054 0.92335 0.94333 0.94145 0.89030 0.91088 0.93507 0.92862 0.93074 0.91336 0.95732 0.88928 0.95392 0.87791 0.85938 0.97216 0.90860 0.92937 0.89446 0.91348 0.91517 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.13 37.16 0.34 -1.79 16 2 C -0.09 -1.29 2.96 -90.62 -0.27 -1.56 16 3 C -0.15 -1.70 9.19 37.16 0.34 -1.36 16 4 C 0.06 0.76 4.21 -3.83 -0.02 0.75 16 5 N -0.51 -7.95 3.30 -234.63 -0.77 -8.72 16 6 C 0.06 0.84 4.74 -3.82 -0.02 0.82 16 7 C -0.03 -0.31 5.82 -29.51 -0.17 -0.48 16 8 C 0.22 2.91 15.43 -20.76 -0.32 2.59 16 9 N -0.46 -7.24 18.54 42.16 0.78 -6.45 16 10 C 0.09 1.73 4.52 -3.82 -0.02 1.71 16 11 C 0.01 0.29 0.74 -155.66 -0.11 0.18 16 12 C -0.45 -11.31 9.10 -34.44 -0.31 -11.63 16 13 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 14 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 15 N -0.90 -26.05 13.95 55.43 0.77 -25.28 16 16 Si 0.87 20.75 24.90 -169.99 -4.23 16.51 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.26 -5.84 5.62 56.52 0.32 -5.52 16 20 C -0.21 -4.16 7.58 -26.69 -0.20 -4.36 16 21 C -0.19 -3.57 8.46 -26.69 -0.23 -3.80 16 22 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.09 1.71 7.57 -51.93 -0.39 1.32 16 25 H 0.07 1.20 6.71 -51.93 -0.35 0.85 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.78 6.22 -51.93 -0.32 0.45 16 30 H 0.02 0.32 7.99 -51.93 -0.42 -0.09 16 31 H 0.09 1.41 5.57 -51.93 -0.29 1.12 16 32 H 0.03 0.36 8.05 -51.93 -0.42 -0.06 16 33 H 0.10 0.99 6.46 -51.93 -0.34 0.65 16 34 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.01 0.17 7.95 -51.93 -0.41 -0.25 16 36 H 0.07 1.43 4.93 -51.93 -0.26 1.18 16 37 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 38 H 0.09 1.91 7.07 -51.93 -0.37 1.54 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.12 7.67 -51.93 -0.40 0.72 16 41 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -28.26 325.55 -6.61 -34.87 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.98 Total: 1.14 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -1.08 Total: -16.97 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.78 Total: -40.46 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.23 Total: 16.51 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.26 -6.61 -34.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255481.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.099 kcal (2) G-P(sol) polarization free energy of solvation -28.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds