Wall clock time and date at job start Sun Mar 29 2020 22:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28717 * 125.87177 * 2 1 4 4 N 1.28626 * 110.18177 * 180.23664 * 3 2 1 5 5 C 1.33776 * 108.88728 * 359.75547 * 4 3 2 6 6 C 1.35315 * 125.86848 * 179.81907 * 2 1 3 7 7 C 1.50701 * 126.91028 * 0.04243 * 6 2 1 8 8 N 1.46498 * 109.47356 * 274.70117 * 7 6 2 9 9 C 1.36934 * 120.00245 * 270.00653 * 8 7 6 10 10 H 1.08003 * 119.99853 * 141.41724 * 9 8 7 11 11 C 1.38807 * 119.99880 * 321.40523 * 9 8 7 12 12 N 1.31619 * 120.00153 * 339.57385 * 11 9 8 13 13 Si 1.86804 * 119.99952 * 159.56820 * 11 9 8 14 14 H 1.48504 * 109.46973 * 90.00602 * 13 11 9 15 15 H 1.48502 * 109.47243 * 210.00402 * 13 11 9 16 16 H 1.48499 * 109.47023 * 330.00566 * 13 11 9 17 17 C 1.46503 * 119.99449 * 90.00174 * 8 7 6 18 18 C 1.55239 * 110.57804 * 239.82840 * 17 8 7 19 19 C 1.54895 * 102.58597 * 203.33976 * 18 17 8 20 20 C 1.54272 * 104.31053 * 37.93298 * 19 18 17 21 21 C 1.53870 * 106.60068 * 336.32028 * 20 19 18 22 22 H 1.08995 * 109.47090 * 270.17359 * 1 2 3 23 23 H 1.08998 * 109.46895 * 30.17650 * 1 2 3 24 24 H 1.08996 * 109.46884 * 150.17672 * 1 2 3 25 25 H 1.07995 * 126.75606 * 179.97438 * 5 4 3 26 26 H 1.09000 * 109.47300 * 154.70613 * 7 6 2 27 27 H 1.08998 * 109.47161 * 34.70768 * 7 6 2 28 28 H 0.97003 * 120.00150 * 179.97438 * 12 11 9 29 29 H 1.08999 * 110.43842 * 2.41147 * 17 8 7 30 30 H 1.08994 * 110.90122 * 85.04903 * 18 17 8 31 31 H 1.09000 * 110.76846 * 321.56620 * 18 17 8 32 32 H 1.09001 * 110.48790 * 279.18810 * 19 18 17 33 33 H 1.09005 * 110.48598 * 156.67485 * 19 18 17 34 34 H 1.08995 * 110.02977 * 95.61205 * 20 19 18 35 35 H 1.09004 * 110.02401 * 216.98893 * 20 19 18 36 36 H 1.09001 * 110.02918 * 119.28632 * 21 20 19 37 37 H 1.08995 * 110.03116 * 240.67042 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2193 1.0430 0.0000 4 7 3.4576 0.6952 -0.0050 5 6 3.5322 -0.6405 -0.0031 6 6 2.2579 -1.0965 0.0035 7 6 1.8117 -2.5360 0.0071 8 7 1.5581 -2.9652 1.3847 9 6 2.5685 -3.5153 2.1274 10 1 2.6567 -3.2795 3.1777 11 6 3.4791 -4.3763 1.5305 12 7 3.1715 -4.9807 0.4025 13 14 5.1413 -4.6771 2.3281 14 1 5.0417 -5.8283 3.2609 15 1 6.1474 -4.9767 1.2778 16 1 5.5561 -3.4654 3.0798 17 6 0.2236 -2.8057 1.9676 18 6 0.2823 -1.8965 3.2245 19 6 -0.9826 -2.3242 4.0098 20 6 -1.0646 -3.8502 3.7988 21 6 -0.2978 -4.1564 2.5004 22 1 -0.3633 0.0031 1.0276 23 1 -0.3633 0.8884 -0.5166 24 1 -0.3633 -0.8915 -0.5111 25 1 4.4322 -1.2375 -0.0065 26 1 2.5918 -3.1593 -0.4298 27 1 0.8976 -2.6345 -0.5783 28 1 3.8080 -5.5820 -0.0149 29 1 -0.4667 -2.3940 1.2313 30 1 0.2267 -0.8442 2.9462 31 1 1.1831 -2.0968 3.8047 32 1 -1.8676 -1.8347 3.6032 33 1 -0.8712 -2.0908 5.0687 34 1 -0.6004 -4.3685 4.6378 35 1 -2.1056 -4.1579 3.7000 36 1 0.5387 -4.8233 2.7093 37 1 -0.9663 -4.6134 1.7709 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093563128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:12 Heat of formation + Delta-G solvation = 92.017126 kcal Electronic energy + Delta-G solvation = -19399.032619 eV Core-core repulsion = 16599.179612 eV Total energy + Delta-G solvation = -2799.853007 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.99770 -39.31017 -36.36209 -35.38219 -33.35784 -31.95808 -29.38182 -28.90980 -28.11347 -27.60461 -24.42048 -23.28447 -21.53926 -21.29723 -20.74917 -18.50481 -17.83251 -17.42063 -17.04049 -16.42734 -16.00596 -15.38689 -15.03391 -14.97995 -14.39787 -14.15003 -13.92989 -13.68938 -13.33050 -13.01502 -12.89501 -12.69830 -12.37859 -12.20012 -12.10688 -11.90554 -11.82995 -11.76782 -11.56474 -11.24158 -11.08442 -10.83922 -10.48460 -9.92401 -8.53892 -7.85621 -5.44233 0.80045 1.44051 1.50920 1.57711 1.67974 1.74035 2.51836 3.25528 3.63078 3.68482 3.92421 3.98972 4.05024 4.18348 4.26904 4.34671 4.40120 4.53839 4.66933 4.76206 4.86667 4.88913 4.91922 4.98975 5.07590 5.18055 5.24805 5.34097 5.35898 5.53864 5.56073 5.64218 5.69823 5.82141 5.89972 6.51486 7.17710 7.64671 7.84168 8.35204 9.12692 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.012448 C = 0.007632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.835646 B = 2248.815068 C = 3667.942758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.285 5.285 3 N -0.127 5.127 4 N -0.306 5.306 5 C -0.073 4.073 6 C 0.005 3.995 7 C 0.215 3.785 8 N -0.574 5.574 9 C -0.249 4.249 10 H 0.046 0.954 11 C -0.015 4.015 12 N -0.905 5.905 13 Si 0.936 3.064 14 H -0.287 1.287 15 H -0.288 1.288 16 H -0.282 1.282 17 C 0.164 3.836 18 C -0.132 4.132 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.129 4.129 22 H 0.097 0.903 23 H 0.119 0.881 24 H 0.112 0.888 25 H 0.176 0.824 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.254 0.746 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.669 4.008 0.884 11.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.080 5.080 3 N -0.106 5.106 4 N -0.172 5.172 5 C -0.231 4.231 6 C -0.131 4.131 7 C 0.086 3.914 8 N -0.292 5.292 9 C -0.380 4.380 10 H 0.063 0.937 11 C -0.214 4.214 12 N -0.549 5.549 13 Si 0.765 3.235 14 H -0.214 1.214 15 H -0.214 1.214 16 H -0.208 1.208 17 C 0.058 3.942 18 C -0.171 4.171 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.168 4.168 22 H 0.115 0.885 23 H 0.137 0.863 24 H 0.130 0.870 25 H 0.194 0.806 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.590 5.425 0.777 11.924 hybrid contribution 1.391 -1.567 0.463 2.146 sum -9.199 3.858 1.240 10.052 Atomic orbital electron populations 1.22612 0.71108 1.07117 1.05903 1.47368 1.10224 1.03851 1.46517 1.77976 0.96696 1.13175 1.22739 1.74867 1.10656 1.13484 1.18241 1.23337 0.98559 0.91258 1.09955 1.24012 0.91068 0.94143 1.03875 1.19479 1.01012 0.83356 0.87597 1.43918 1.06187 1.68048 1.11067 1.18809 1.05594 1.19919 0.93657 0.93678 1.25547 1.01829 0.95802 0.98218 1.70001 1.35014 1.29066 1.20786 0.85788 0.82062 0.77639 0.77979 1.21383 1.21406 1.20760 1.21613 0.85502 0.93515 0.93540 1.22862 0.97671 0.98290 0.98281 1.22252 0.97442 0.95555 0.99745 1.22032 1.00090 0.96361 0.96803 1.22402 0.98670 0.98936 0.96841 0.88485 0.86283 0.86978 0.80644 0.88797 0.92070 0.93624 0.90682 0.93111 0.94308 0.89888 0.91848 0.93304 0.90540 0.93823 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.59 10.55 127.77 1.35 2.94 16 2 N -0.28 -9.75 3.74 -355.73 -1.33 -11.08 16 3 N -0.13 -4.99 13.16 37.02 0.49 -4.50 16 4 N -0.31 -13.26 12.41 -58.26 -0.72 -13.98 16 5 C -0.07 -3.11 11.99 83.73 1.00 -2.11 16 6 C 0.00 0.19 6.58 41.36 0.27 0.46 16 7 C 0.21 8.75 5.50 85.63 0.47 9.23 16 8 N -0.57 -24.61 2.44 -675.70 -1.65 -26.26 16 9 C -0.25 -12.39 7.75 84.03 0.65 -11.74 16 10 H 0.05 2.37 6.72 -2.91 -0.02 2.35 16 11 C -0.02 -0.79 4.97 84.86 0.42 -0.36 16 12 N -0.91 -47.63 11.48 21.65 0.25 -47.38 16 13 Si 0.94 42.74 29.60 68.60 2.03 44.77 16 14 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 15 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 C 0.16 5.74 3.39 46.19 0.16 5.89 16 18 C -0.13 -4.31 6.47 32.01 0.21 -4.10 16 19 C -0.11 -2.84 6.82 31.67 0.22 -2.63 16 20 C -0.11 -3.16 6.80 31.32 0.21 -2.95 16 21 C -0.13 -4.51 6.41 31.32 0.20 -4.31 16 22 H 0.10 1.96 7.31 -2.39 -0.02 1.94 16 23 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.11 2.08 6.96 -2.39 -0.02 2.06 16 25 H 0.18 7.38 8.06 -2.91 -0.02 7.35 16 26 H 0.09 4.47 5.55 -2.39 -0.01 4.46 16 27 H 0.06 2.18 7.09 -2.39 -0.02 2.17 16 28 H 0.25 13.12 8.31 -92.71 -0.77 12.35 16 29 H 0.08 2.22 6.89 -2.39 -0.02 2.20 16 30 H 0.05 1.58 7.31 -2.39 -0.02 1.56 16 31 H 0.04 1.53 6.62 -2.39 -0.02 1.51 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.04 1.90 6.93 -2.39 -0.02 1.88 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -60.72 297.99 5.29 -55.43 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.06 Total: 12.69 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 5.16 Total: -9.69 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -2.97 Total: -103.20 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -60.72 5.29 -55.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093563128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.451 kcal (2) G-P(sol) polarization free energy of solvation -60.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds