Wall clock time and date at job start Sun Mar 29 2020 22:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.50459 * 2 1 4 4 C 1.53126 * 109.50129 * 120.07427 * 2 1 3 5 5 C 1.53120 * 109.16018 * 177.59549 * 4 2 1 6 6 C 1.53042 * 109.31155 * 302.32860 * 5 4 2 7 7 N 1.46931 * 109.48092 * 59.16066 * 6 5 4 8 8 C 1.46893 * 110.98528 * 174.18417 * 7 6 5 9 9 C 1.52997 * 109.46949 * 190.38854 * 8 7 6 10 10 H 1.08997 * 109.47333 * 303.66961 * 9 8 7 11 11 C 1.47207 * 109.47297 * 63.66906 * 9 8 7 12 12 N 5.09463 * 131.31642 * 300.05182 * 2 1 3 13 13 C 1.53001 * 109.47220 * 183.66693 * 9 8 7 14 14 C 1.50707 * 109.47175 * 174.99894 * 13 9 8 15 15 H 1.07994 * 119.99629 * 0.02562 * 14 13 9 16 16 C 1.37876 * 119.99824 * 179.97438 * 14 13 9 17 17 N 1.31520 * 119.99536 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00092 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47343 * 90.00054 * 18 16 14 20 20 H 1.48509 * 109.47150 * 209.99854 * 18 16 14 21 21 H 1.48504 * 109.47460 * 329.99704 * 18 16 14 22 22 C 1.46847 * 111.21421 * 298.28200 * 7 6 5 23 23 H 1.09002 * 109.47476 * 299.92919 * 1 2 3 24 24 H 1.08999 * 109.47077 * 59.92399 * 1 2 3 25 25 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47289 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.46851 * 300.07019 * 3 2 1 28 28 H 1.08991 * 109.47593 * 60.07500 * 3 2 1 29 29 H 1.08999 * 109.52195 * 57.69567 * 4 2 1 30 30 H 1.08996 * 109.52118 * 297.49974 * 4 2 1 31 31 H 1.09008 * 109.50587 * 62.28749 * 5 4 2 32 32 H 1.08995 * 109.50411 * 182.36716 * 5 4 2 33 33 H 1.09000 * 109.46371 * 179.21479 * 6 5 4 34 34 H 1.08998 * 109.45966 * 299.17906 * 6 5 4 35 35 H 1.08996 * 109.47216 * 310.38487 * 8 7 6 36 36 H 1.08996 * 109.47724 * 70.38754 * 8 7 6 37 37 H 1.08998 * 109.47379 * 294.99972 * 13 9 8 38 38 H 1.08995 * 109.47034 * 55.00522 * 13 9 8 39 39 H 0.97000 * 119.99393 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.46651 * 301.72573 * 22 7 6 41 41 H 1.09002 * 109.46010 * 181.75986 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0411 -0.7233 1.2491 5 6 3.5711 -0.7715 1.2112 6 6 4.0237 -1.4734 -0.0713 7 7 3.5093 -0.7426 -1.2375 8 6 4.0372 -1.3069 -2.4868 9 6 3.6957 -0.3755 -3.6515 10 1 2.6175 -0.2199 -3.6882 11 6 4.3718 0.9181 -3.4600 12 7 4.8935 1.9162 -3.3121 13 6 4.1649 -1.0067 -4.9639 14 6 3.7205 -0.1493 -6.1209 15 1 3.1598 0.7554 -5.9383 16 6 4.0306 -0.5196 -7.4123 17 7 3.6431 0.2289 -8.4219 18 14 5.0009 -2.0842 -7.7279 19 1 4.0631 -3.2241 -7.8905 20 1 5.8068 -1.9258 -8.9652 21 1 5.9045 -2.3467 -6.5789 22 6 2.0410 -0.7240 -1.2477 23 1 -0.3634 0.5127 0.8906 24 1 -0.3633 0.5150 -0.8893 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1308 1.4416 -0.0005 27 1 1.6767 1.9566 -0.8894 28 1 1.6789 1.9559 0.8906 29 1 1.6452 -1.7387 1.2697 30 1 1.7155 -0.1862 2.1399 31 1 3.9678 0.2437 1.2298 32 1 3.9394 -1.3220 2.0767 33 1 5.1128 -1.4966 -0.1075 34 1 3.6383 -2.4929 -0.0827 35 1 5.1195 -1.4105 -2.4098 36 1 3.5901 -2.2855 -2.6610 37 1 5.2524 -1.0806 -4.9631 38 1 3.7331 -2.0026 -5.0628 39 1 3.8610 -0.0318 -9.3304 40 1 1.6648 -1.7470 -1.2537 41 1 1.6905 -0.2032 -2.1388 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112731801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:30 Heat of formation + Delta-G solvation = 3.998942 kcal Electronic energy + Delta-G solvation = -18947.263463 eV Core-core repulsion = 16247.134045 eV Total energy + Delta-G solvation = -2700.129418 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.77037 -36.79069 -34.77193 -33.50997 -32.39650 -31.17009 -27.41710 -27.19014 -26.65378 -24.62095 -22.21663 -21.51894 -21.13599 -18.48762 -16.86801 -16.68328 -15.84221 -14.95277 -14.84830 -14.40623 -14.32392 -14.09233 -13.51498 -13.15631 -13.11510 -12.67961 -12.43503 -12.30372 -12.06069 -11.95547 -11.92149 -11.52090 -11.36991 -11.28447 -11.17650 -11.00618 -10.71735 -10.52052 -10.42656 -10.29322 -10.15313 -9.87797 -9.67430 -9.29762 -8.60967 -8.16138 -6.09909 -4.10323 3.25964 3.35013 3.36040 3.73341 3.82412 3.97310 4.38897 4.61808 4.74896 4.80537 4.85580 5.06363 5.24994 5.25673 5.36688 5.44183 5.47284 5.53423 5.55063 5.68388 5.71447 5.74999 5.82858 5.89871 5.94168 5.96270 5.99426 6.05316 6.19657 6.22287 6.26368 6.30405 6.41301 6.59557 6.93421 7.12733 7.18243 7.23114 7.64990 8.41869 8.59509 8.93960 9.50088 11.03269 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.029987 B = 0.005377 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.520451 B = 5206.295086 C = 5350.759880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C -0.133 4.133 4 C -0.108 4.108 5 C -0.118 4.118 6 C 0.057 3.943 7 N -0.538 5.538 8 C 0.060 3.940 9 C 0.020 3.980 10 H 0.104 0.896 11 C 0.255 3.745 12 N -0.472 5.472 13 C -0.006 4.006 14 C -0.527 4.527 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.877 3.123 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.264 1.264 22 C 0.061 3.939 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.031 0.969 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.025 0.975 38 H 0.031 0.969 39 H 0.264 0.736 40 H 0.034 0.966 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.084 -6.363 18.852 20.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.062 4.062 3 C -0.190 4.190 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.071 4.071 7 N -0.262 5.262 8 C -0.068 4.068 9 C -0.002 4.002 10 H 0.122 0.878 11 C -0.062 4.062 12 N -0.149 5.149 13 C -0.044 4.044 14 C -0.564 4.564 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.535 5.535 18 Si 0.704 3.296 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.067 4.067 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.124 -4.353 18.913 19.657 hybrid contribution -0.031 -2.005 -0.578 2.087 sum -3.154 -6.359 18.334 19.660 Atomic orbital electron populations 1.21844 0.94623 1.01533 1.01920 1.20568 0.94719 0.96382 0.94547 1.21779 1.02480 0.94114 1.00637 1.21638 0.95636 0.99939 0.97390 1.21624 0.95836 1.01720 0.96433 1.22061 0.99804 0.94804 0.90401 1.61910 1.08047 1.54191 1.02048 1.22235 1.00747 0.95883 0.87975 1.18983 0.99706 0.85308 0.96173 0.87831 1.28648 0.92858 0.94088 0.90624 1.80985 1.10454 1.12173 1.11243 1.19642 0.97264 0.96665 0.90878 1.21026 1.36376 1.09625 0.89416 0.90799 1.24989 0.95244 0.96758 0.96113 1.69911 1.46280 1.38295 0.99051 0.86824 0.80750 0.83897 0.78125 1.20080 1.21305 1.18859 1.22232 0.87295 0.98730 0.98443 0.92712 0.92299 0.92894 0.91167 0.92945 0.93814 0.92450 0.92126 0.90862 0.91982 0.90934 0.95065 0.90245 0.93037 0.95676 0.95034 0.92586 0.94795 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.48 37.15 0.32 -1.02 16 2 C -0.06 -0.66 0.77 -154.43 -0.12 -0.78 16 3 C -0.13 -1.59 8.04 37.16 0.30 -1.30 16 4 C -0.11 -1.03 4.79 -26.60 -0.13 -1.15 16 5 C -0.12 -1.16 5.74 -26.65 -0.15 -1.31 16 6 C 0.06 0.63 5.47 -3.79 -0.02 0.60 16 7 N -0.54 -7.00 3.61 -234.61 -0.85 -7.85 16 8 C 0.06 0.86 4.34 -3.83 -0.02 0.84 16 9 C 0.02 0.36 2.12 -93.40 -0.20 0.16 16 10 H 0.10 1.80 6.29 -51.93 -0.33 1.47 16 11 C 0.25 5.32 13.64 -20.76 -0.28 5.04 16 12 N -0.47 -10.78 18.54 42.15 0.78 -10.00 16 13 C -0.01 -0.12 3.49 -27.88 -0.10 -0.22 16 14 C -0.53 -14.25 9.15 -34.44 -0.32 -14.57 16 15 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 18 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 22 C 0.06 0.74 4.02 -3.83 -0.02 0.72 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.96 6.01 -51.93 -0.31 0.64 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.80 6.58 -51.92 -0.34 0.46 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.78 8.01 -51.93 -0.42 0.36 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 1.11 7.98 -51.93 -0.41 0.70 16 36 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 37 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 38 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 1.09 6.16 -51.93 -0.32 0.77 16 LS Contribution 321.32 15.07 4.84 4.84 Total: -1.00 -30.51 321.32 -7.07 -37.58 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -7.13 Total: -3.16 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -0.83 Total: -11.07 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.71 Total: -44.23 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.51 -7.07 -37.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112731801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.580 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds