Wall clock time and date at job start Sun Mar 29 2020 23:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31394 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48505 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47205 * 299.99588 * 3 2 1 6 6 H 1.48498 * 109.46958 * 59.99843 * 3 2 1 7 7 C 1.38995 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99797 * 180.27680 * 9 7 2 11 11 O 1.21653 * 120.00225 * 359.71995 * 10 9 7 12 12 C 1.47191 * 119.99772 * 179.72303 * 10 9 7 13 13 C 1.39985 * 120.13313 * 359.72216 * 12 10 9 14 14 C 1.37891 * 119.96584 * 179.73751 * 13 12 10 15 15 C 1.39752 * 120.12041 * 0.54790 * 14 13 12 16 16 C 1.38619 * 120.15273 * 359.70004 * 15 14 13 17 17 C 1.38434 * 120.18736 * 0.03929 * 16 15 14 18 18 O 1.35732 * 120.08008 * 179.97438 * 17 16 15 19 19 O 1.36369 * 108.56198 * 179.71146 * 15 14 13 20 20 C 1.43957 * 105.55562 * 17.36567 * 19 15 14 21 21 O 1.36633 * 131.34582 * 180.19391 * 14 13 12 22 22 H 0.97004 * 120.00390 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99657 * 359.97438 * 9 7 2 24 24 H 1.07995 * 120.01455 * 0.02562 * 13 12 10 25 25 H 1.08001 * 119.90495 * 180.02562 * 16 15 14 26 26 H 0.96708 * 113.99825 * 270.01988 * 18 17 16 27 27 H 1.08994 * 110.55696 * 91.28336 * 20 19 15 28 28 H 1.09001 * 110.55945 * 214.12695 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7080 1.3464 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8891 2.3964 1.2125 7 6 2.0089 -1.2037 0.0005 8 1 3.0889 -1.2037 0.0010 9 7 1.3242 -2.3896 0.0005 10 6 1.9982 -3.5568 0.0067 11 8 3.2147 -3.5568 0.0071 12 6 1.2622 -4.8314 0.0129 13 6 -0.1377 -4.8347 0.0182 14 6 -0.8237 -6.0308 0.0185 15 6 -0.1240 -7.2405 0.0250 16 6 1.2622 -7.2432 0.0250 17 6 1.9606 -6.0479 0.0192 18 8 3.3179 -6.0530 0.0197 19 8 -1.0257 -8.2635 0.0304 20 6 -2.2739 -7.6801 -0.3868 21 8 -2.1625 -6.3035 0.0196 22 1 -0.4851 0.8400 -0.0004 23 1 0.3542 -2.3895 0.0005 24 1 -0.6800 -3.9008 0.0174 25 1 1.7989 -8.1804 0.0296 26 1 3.7109 -6.0504 0.9033 27 1 -2.3873 -7.7520 -1.4684 28 1 -3.1100 -8.1623 0.1197 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126514207.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:44 Heat of formation + Delta-G solvation = -108.104530 kcal Electronic energy + Delta-G solvation = -17859.570006 eV Core-core repulsion = 14649.361470 eV Total energy + Delta-G solvation = -3210.208535 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 251.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.03785 -39.24301 -37.36295 -36.21592 -35.49042 -34.02480 -31.55831 -30.26534 -28.99442 -25.96554 -25.09833 -23.26353 -22.48196 -20.05662 -18.67026 -18.31637 -17.55721 -17.11863 -16.70582 -16.02966 -15.38083 -14.66867 -14.44857 -14.32605 -13.98302 -13.83160 -13.58538 -13.30036 -12.90396 -12.53064 -12.29424 -11.67189 -11.57915 -11.20999 -10.49671 -10.40055 -10.39672 -10.27862 -9.64755 -8.68998 -8.47570 -8.12016 -7.79293 -6.60286 -3.91666 1.00104 1.32306 2.76706 3.09290 3.20256 3.27570 3.37101 3.47007 4.05459 4.29343 4.56080 4.60033 4.67778 4.77239 4.91019 5.23062 5.23705 5.28049 5.60735 5.83384 6.06572 6.15533 6.25277 6.44708 6.62479 7.16129 7.39264 7.91240 8.06550 8.46110 9.02209 9.36990 9.93702 10.56443 Molecular weight = 251.07amu Principal moments of inertia in cm(-1) A = 0.031075 B = 0.005982 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.817376 B = 4679.809438 C = 5556.612591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.022 3.978 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.290 4.290 8 H 0.110 0.890 9 N -0.543 5.543 10 C 0.469 3.531 11 O -0.579 6.579 12 C -0.111 4.111 13 C -0.072 4.072 14 C 0.018 3.982 15 C 0.043 3.957 16 C -0.136 4.136 17 C 0.160 3.840 18 O -0.466 6.466 19 O -0.311 6.311 20 C 0.213 3.787 21 O -0.308 6.308 22 H 0.276 0.724 23 H 0.393 0.607 24 H 0.144 0.856 25 H 0.140 0.860 26 H 0.392 0.608 27 H 0.082 0.918 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.534 -12.083 0.657 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.181 4.181 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.420 4.420 8 H 0.128 0.872 9 N -0.178 5.178 10 C 0.257 3.743 11 O -0.464 6.464 12 C -0.116 4.116 13 C -0.092 4.092 14 C -0.026 4.026 15 C -0.003 4.003 16 C -0.156 4.156 17 C 0.112 3.888 18 O -0.276 6.276 19 O -0.227 6.227 20 C 0.101 3.899 21 O -0.224 6.224 22 H 0.086 0.914 23 H 0.228 0.772 24 H 0.162 0.838 25 H 0.158 0.842 26 H 0.249 0.751 27 H 0.099 0.901 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.087 -11.968 0.154 12.647 hybrid contribution -0.568 0.661 0.395 0.957 sum -4.655 -11.307 0.549 12.240 Atomic orbital electron populations 1.69611 1.06165 1.28762 1.48144 1.25409 0.95714 1.00192 0.96804 0.85704 0.79804 0.80443 0.77905 1.18909 1.20496 1.20508 1.19919 0.93833 0.82018 1.46217 0.87195 1.41969 1.09490 1.04787 1.61549 1.17251 0.87494 0.82621 0.86919 1.90656 1.12512 1.86506 1.56769 1.20577 0.91843 0.95661 1.03481 1.20201 0.92413 0.95750 1.00819 1.19561 0.82211 0.94607 1.06179 1.19558 0.91447 0.85140 1.04115 1.20093 0.89238 0.99152 1.07089 1.17806 0.83999 0.89297 0.97712 1.84778 1.13844 1.95821 1.33168 1.87277 1.18845 1.31878 1.84677 1.25569 0.87406 0.76908 0.99989 1.87397 1.20948 1.28745 1.85330 0.91395 0.77210 0.83847 0.84183 0.75081 0.90085 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.37 13.05 55.50 0.72 -22.65 15 2 C 0.02 0.58 5.50 -17.46 -0.10 0.48 15 3 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 15 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 6 H -0.28 -5.96 7.11 56.52 0.40 -5.55 15 7 C -0.29 -7.91 9.68 -14.99 -0.15 -8.06 15 8 H 0.11 3.12 7.15 -52.49 -0.38 2.74 15 9 N -0.54 -13.81 5.23 -12.02 -0.06 -13.87 15 10 C 0.47 11.47 7.70 -12.62 -0.10 11.37 15 11 O -0.58 -15.72 14.72 -16.73 -0.25 -15.96 15 12 C -0.11 -2.23 5.89 -104.84 -0.62 -2.85 15 13 C -0.07 -1.30 9.54 -39.05 -0.37 -1.67 15 14 C 0.02 0.30 7.13 -39.14 -0.28 0.03 15 15 C 0.04 0.67 7.15 -38.88 -0.28 0.39 15 16 C -0.14 -2.09 9.98 -39.37 -0.39 -2.48 15 17 C 0.16 2.85 6.71 -38.75 -0.26 2.59 15 18 O -0.47 -8.27 11.56 -40.86 -0.47 -8.75 15 19 O -0.31 -4.28 11.39 -45.26 -0.52 -4.79 15 20 C 0.21 2.32 8.88 101.05 0.90 3.22 15 21 O -0.31 -4.59 11.41 -46.12 -0.53 -5.11 15 22 H 0.28 6.81 8.31 -40.82 -0.34 6.47 15 23 H 0.39 9.51 5.91 -40.82 -0.24 9.27 15 24 H 0.14 2.57 6.39 -52.49 -0.34 2.23 15 25 H 0.14 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.39 5.34 9.06 45.56 0.41 5.75 15 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15 28 H 0.13 0.93 8.14 -51.93 -0.42 0.50 15 LS Contribution 257.56 15.07 3.88 3.88 Total: -1.00 -31.97 257.56 -4.82 -36.80 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -0.94 Total: 12.15 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.64 Total: 3.03 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.66 Total: -36.52 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.76 Total: -34.61 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.97 -4.82 -36.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126514207.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.308 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds