Wall clock time and date at job start Sun Mar 29 2020 23:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39746 * 120.18050 * 330.77593 * 3 2 1 5 5 C 1.37775 * 119.91218 * 179.97438 * 4 3 2 6 6 C 1.38654 * 120.28280 * 0.02562 * 5 4 3 7 7 Cl 1.73603 * 119.81664 * 180.02562 * 6 5 4 8 8 C 1.38243 * 120.36625 * 359.74521 * 6 5 4 9 9 C 1.38593 * 120.07899 * 0.50730 * 8 6 5 10 10 O 1.35709 * 120.14306 * 179.76575 * 9 8 6 11 11 C 1.42903 * 116.99720 * 359.73092 * 10 9 8 12 12 C 1.53000 * 109.46726 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99711 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00219 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46794 * 90.00022 * 17 15 13 19 19 H 1.48502 * 109.47140 * 210.00005 * 17 15 13 20 20 H 1.48501 * 109.46982 * 330.00118 * 17 15 13 21 21 H 1.08002 * 120.04159 * 0.02562 * 4 3 2 22 22 H 1.07999 * 119.85277 * 180.02562 * 5 4 3 23 23 H 1.08003 * 119.96295 * 180.28344 * 8 6 5 24 24 H 1.09002 * 109.47382 * 59.99602 * 11 10 9 25 25 H 1.09001 * 109.46938 * 299.99588 * 11 10 9 26 26 H 1.09001 * 109.47194 * 299.99575 * 12 11 10 27 27 H 1.08992 * 109.47399 * 59.99748 * 12 11 10 28 28 H 0.97000 * 119.99684 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2710 -1.0533 0.5898 5 6 4.6487 -1.0473 0.5862 6 6 5.3418 0.0008 0.0000 7 17 7.0778 -0.0043 0.0018 8 6 4.6581 1.0469 -0.5909 9 6 3.2722 1.0589 -0.5913 10 8 2.5997 2.0876 -1.1668 11 6 3.3843 3.1301 -1.7498 12 6 2.4585 4.1928 -2.3452 13 6 3.2859 5.2919 -2.9606 14 1 4.3641 5.2379 -2.9298 15 6 2.6663 6.3662 -3.5630 16 7 3.3882 7.3256 -4.0996 17 14 0.8013 6.4591 -3.6170 18 1 0.3060 7.1680 -2.4097 19 1 0.3775 7.1978 -4.8335 20 1 0.2380 5.0855 -3.6505 21 1 2.7349 -1.8719 1.0471 22 1 5.1910 -1.8625 1.0419 23 1 5.2045 1.8578 -1.0496 24 1 4.0134 2.7145 -2.5370 25 1 4.0131 3.5834 -0.9836 26 1 1.8300 3.7391 -3.1115 27 1 1.8291 4.6084 -1.5584 28 1 2.9523 8.0812 -4.5237 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132551623.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:05 Heat of formation + Delta-G solvation = -18.029544 kcal Electronic energy + Delta-G solvation = -14932.599157 eV Core-core repulsion = 12167.005731 eV Total energy + Delta-G solvation = -2765.593426 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.45174 -38.95986 -37.83597 -37.09115 -35.44921 -33.00864 -32.23467 -31.02264 -27.26196 -24.99661 -23.83841 -22.41743 -20.34275 -19.33833 -18.43375 -17.42175 -17.21344 -16.52043 -16.26718 -15.51297 -15.22852 -15.11941 -14.53811 -14.39454 -14.27643 -13.99668 -13.87908 -13.43900 -12.98173 -12.85901 -12.50588 -12.23945 -12.22594 -11.97867 -11.85036 -11.57658 -11.48706 -10.83833 -10.02103 -9.38913 -8.37040 -6.42990 -0.46351 0.22083 0.99242 1.32334 1.34884 1.45972 1.60249 1.78651 2.04323 2.29758 2.69372 2.83892 2.98381 3.70242 3.84939 4.02231 4.16330 4.19366 4.28038 4.54105 4.64160 4.82265 5.03700 5.06959 5.13882 5.25696 5.43900 5.52705 6.12907 6.17812 6.45780 6.63386 7.22342 8.78361 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.021365 B = 0.005587 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.237418 B = 5010.276705 C = 6300.066891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.283 3.717 3 C -0.081 4.081 4 C 0.002 3.998 5 C -0.141 4.141 6 C 0.033 3.967 7 Cl -0.052 7.052 8 C -0.213 4.213 9 C 0.180 3.820 10 O -0.328 6.328 11 C 0.081 3.919 12 C -0.009 4.009 13 C -0.533 4.533 14 H 0.050 0.950 15 C 0.018 3.982 16 N -0.939 5.939 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.256 1.256 21 H 0.185 0.815 22 H 0.180 0.820 23 H 0.147 0.853 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.249 -19.426 10.868 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.031 4.031 3 C -0.086 4.086 4 C -0.019 4.019 5 C -0.160 4.160 6 C 0.006 3.994 7 Cl -0.023 7.023 8 C -0.233 4.233 9 C 0.130 3.870 10 O -0.240 6.240 11 C 0.007 3.993 12 C -0.047 4.047 13 C -0.571 4.571 14 H 0.068 0.932 15 C -0.180 4.180 16 N -0.579 5.579 17 Si 0.764 3.236 18 H -0.192 1.192 19 H -0.204 1.204 20 H -0.180 1.180 21 H 0.202 0.798 22 H 0.197 0.803 23 H 0.165 0.835 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.437 -19.197 10.737 22.262 hybrid contribution 0.122 0.990 -0.537 1.133 sum 3.558 -18.207 10.200 21.171 Atomic orbital electron populations 1.81214 1.13275 1.09140 1.10447 1.25581 0.92606 0.92468 0.92415 1.15629 0.83852 0.98390 1.10698 1.21320 0.93311 0.94856 0.92364 1.21221 0.93345 0.99074 1.02324 1.21069 0.85465 0.95462 0.97430 1.98410 1.08653 1.98288 1.96920 1.21152 0.92101 1.02406 1.07608 1.19077 0.90428 0.86938 0.90568 1.86093 1.37785 1.30856 1.69316 1.22899 0.94048 0.85467 0.96862 1.19466 0.96053 0.93007 0.96173 1.21086 0.94197 1.04805 1.37008 0.93181 1.25771 1.03206 0.94876 0.94186 1.70005 1.37859 1.11117 1.38900 0.85800 0.80168 0.79294 0.78296 1.19162 1.20435 1.17958 0.79811 0.80252 0.83539 0.90954 0.90929 0.95745 0.95833 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.39 18.54 19.00 0.35 -15.04 15 2 C 0.28 7.99 14.87 88.33 1.31 9.30 15 3 C -0.08 -1.83 5.75 -21.19 -0.12 -1.95 15 4 C 0.00 0.02 9.75 22.52 0.22 0.24 15 5 C -0.14 -1.70 9.80 22.26 0.22 -1.48 15 6 C 0.03 0.59 6.32 22.37 0.14 0.73 15 7 Cl -0.05 -0.88 28.94 -2.72 -0.08 -0.96 15 8 C -0.21 -4.94 8.80 22.36 0.20 -4.74 15 9 C 0.18 4.86 6.69 22.83 0.15 5.02 15 10 O -0.33 -11.45 9.57 -90.30 -0.86 -12.31 15 11 C 0.08 3.02 4.68 71.98 0.34 3.36 15 12 C -0.01 -0.44 4.41 29.85 0.13 -0.31 15 13 C -0.53 -29.54 9.66 25.60 0.25 -29.29 15 14 H 0.05 2.95 7.99 -2.91 -0.02 2.93 15 15 C 0.02 1.04 5.47 84.66 0.46 1.51 15 16 N -0.94 -57.12 13.96 21.45 0.30 -56.82 15 17 Si 0.94 44.19 27.47 68.60 1.88 46.08 15 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 20 H -0.26 -11.59 6.54 99.48 0.65 -10.94 15 21 H 0.18 1.09 8.06 -2.91 -0.02 1.07 15 22 H 0.18 0.95 8.06 -2.91 -0.02 0.93 15 23 H 0.15 3.54 6.30 -2.91 -0.02 3.53 15 24 H 0.07 2.54 7.65 -2.39 -0.02 2.53 15 25 H 0.07 2.55 7.67 -2.39 -0.02 2.53 15 26 H 0.02 1.15 7.20 -2.39 -0.02 1.13 15 27 H 0.02 1.09 7.57 -2.39 -0.02 1.07 15 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 Total: -1.00 -66.82 274.25 6.03 -60.79 By element: Atomic # 1 Polarization: -5.25 SS G_CDS: 1.13 Total: -4.12 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 3.30 Total: -17.61 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: 0.65 Total: -71.86 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.86 Total: -12.31 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -66.82 6.03 -60.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132551623.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.761 kcal (2) G-P(sol) polarization free energy of solvation -66.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds