Wall clock time and date at job start Sun Mar 29 2020 22:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99865 * 2 1 4 4 H 1.48499 * 109.47419 * 86.22281 * 3 2 1 5 5 H 1.48499 * 109.46934 * 326.22516 * 3 2 1 6 6 H 1.48496 * 109.47132 * 206.22560 * 3 2 1 7 7 C 1.38808 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99925 * 162.87112 * 7 2 1 9 9 N 1.36933 * 120.00085 * 342.87195 * 7 2 1 10 10 C 1.46926 * 120.63392 * 332.02312 * 9 7 2 11 11 C 1.53190 * 108.77387 * 233.58443 * 10 9 7 12 12 C 1.53076 * 109.30754 * 305.34152 * 11 10 9 13 13 H 1.08999 * 109.46659 * 301.46386 * 12 11 10 14 14 C 1.53086 * 109.47470 * 61.45478 * 12 11 10 15 15 H 1.08997 * 109.57012 * 58.94355 * 14 12 11 16 16 C 1.53105 * 109.29639 * 179.02224 * 14 12 11 17 17 C 1.53106 * 109.19600 * 302.40189 * 16 14 12 18 18 C 1.53050 * 109.25389 * 57.68872 * 17 16 14 19 19 N 1.46832 * 109.50050 * 300.77117 * 18 17 16 20 20 C 1.46901 * 111.00038 * 185.90069 * 19 18 17 21 21 C 1.52993 * 117.49901 * 119.48292 * 20 19 18 22 22 C 1.52995 * 117.49638 * 50.82147 * 20 19 18 23 23 C 1.46927 * 120.63314 * 151.74110 * 9 7 2 24 24 H 0.97001 * 120.00488 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.58844 * 353.36895 * 10 9 7 26 26 H 1.09002 * 109.59037 * 113.79590 * 10 9 7 27 27 H 1.08992 * 109.50350 * 65.29051 * 11 10 9 28 28 H 1.09005 * 109.50026 * 185.38948 * 11 10 9 29 29 H 1.09008 * 109.51858 * 182.48819 * 16 14 12 30 30 H 1.09001 * 109.56306 * 62.34993 * 16 14 12 31 31 H 1.08993 * 109.51024 * 297.75391 * 17 16 14 32 32 H 1.09004 * 109.50650 * 177.61882 * 17 16 14 33 33 H 1.08997 * 109.46117 * 180.76122 * 18 17 16 34 34 H 1.08993 * 109.45777 * 60.77772 * 18 17 16 35 35 H 1.08999 * 115.54537 * 265.15219 * 20 19 18 36 36 H 1.09003 * 117.50563 * 359.97438 * 21 20 19 37 37 H 1.09005 * 117.49976 * 145.02334 * 21 20 19 38 38 H 1.09004 * 117.49905 * 214.97568 * 22 20 19 39 39 H 1.09000 * 117.50690 * 359.97438 * 22 20 19 40 40 H 1.08999 * 109.59021 * 246.15063 * 23 9 7 41 41 H 1.08993 * 109.58412 * 6.58626 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4178 2.0926 1.3970 5 1 1.4897 2.6283 -0.7783 6 1 3.5853 1.4185 -0.6187 7 6 2.0102 -1.2021 0.0005 8 1 3.0543 -1.2229 -0.2749 9 7 1.3711 -2.3615 0.3503 10 6 0.2275 -2.3372 1.2724 11 6 0.5002 -3.3124 2.4219 12 6 0.8151 -4.6961 1.8479 13 1 -0.0244 -5.0378 1.2425 14 6 2.0716 -4.6135 0.9773 15 1 2.9080 -4.2538 1.5765 16 6 2.3968 -6.0040 0.4251 17 6 2.5807 -6.9785 1.5916 18 6 1.3084 -6.9934 2.4422 19 7 1.0415 -5.6413 2.9486 20 6 -0.0923 -5.6432 3.8826 21 6 0.1717 -5.1756 5.3151 22 6 -0.0643 -6.6600 5.0254 23 6 1.8121 -3.6530 -0.1942 24 1 -0.4851 0.8400 -0.0004 25 1 0.1000 -1.3303 1.6700 26 1 -0.6756 -2.6402 0.7426 27 1 1.3501 -2.9586 3.0054 28 1 -0.3799 -3.3757 3.0619 29 1 3.3158 -5.9581 -0.1594 30 1 1.5786 -6.3454 -0.2091 31 1 3.4240 -6.6587 2.2036 32 1 2.7707 -7.9792 1.2033 33 1 1.4407 -7.6762 3.2814 34 1 0.4681 -7.3255 1.8327 35 1 -1.0617 -5.4037 3.4455 36 1 1.1869 -4.8669 5.5649 37 1 -0.6242 -4.6288 5.8209 38 1 -1.0154 -7.0891 5.3407 39 1 0.7951 -7.3278 5.0841 40 1 1.0352 -4.0616 -0.8404 41 1 2.7300 -3.5145 -0.7653 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134938345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:49 Heat of formation + Delta-G solvation = 44.692393 kcal Electronic energy + Delta-G solvation = -19594.968583 eV Core-core repulsion = 16896.603765 eV Total energy + Delta-G solvation = -2698.364818 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.60930 -36.86541 -35.20548 -32.45414 -32.09081 -29.76439 -29.00764 -25.36481 -23.93570 -22.77594 -22.19860 -21.76966 -19.97406 -19.51997 -19.12911 -16.71637 -16.14081 -15.15827 -14.74961 -14.49142 -13.98431 -13.82417 -13.69376 -13.37636 -12.87056 -12.54936 -12.42928 -12.08121 -11.85795 -11.45421 -11.16533 -11.02485 -10.80110 -10.72546 -10.60344 -10.43612 -10.39178 -10.14093 -10.04821 -9.94224 -9.84139 -9.34858 -9.23750 -8.41646 -7.95609 -6.62100 -5.74518 -3.16759 3.40904 3.47846 3.49153 3.89897 4.02010 4.53059 5.02652 5.06520 5.07733 5.15296 5.22617 5.35495 5.41943 5.53295 5.62642 5.66860 5.71647 5.77517 5.83434 5.89654 6.00944 6.08541 6.13205 6.22837 6.28446 6.30034 6.37829 6.48182 6.51321 6.65429 6.75321 6.78508 6.90473 7.10862 7.41010 7.46816 7.54182 7.72391 7.84273 8.49720 9.25894 9.89513 10.46665 11.33938 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.006547 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.584310 B = 4275.431730 C = 4915.357788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.129 4.129 12 C 0.106 3.894 13 H 0.031 0.969 14 C -0.092 4.092 15 H 0.075 0.925 16 C -0.116 4.116 17 C -0.114 4.114 18 C 0.059 3.941 19 N -0.510 5.510 20 C 0.017 3.983 21 C -0.162 4.162 22 C -0.186 4.186 23 C 0.153 3.847 24 H 0.253 0.747 25 H 0.088 0.912 26 H 0.014 0.986 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.027 0.973 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.015 0.985 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 -13.480 6.667 15.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.046 3.954 11 C -0.169 4.169 12 C -0.002 4.002 13 H 0.049 0.951 14 C -0.113 4.113 15 H 0.093 0.907 16 C -0.155 4.155 17 C -0.152 4.152 18 C -0.069 4.069 19 N -0.234 5.234 20 C -0.092 4.092 21 C -0.200 4.200 22 C -0.223 4.223 23 C 0.026 3.974 24 H 0.063 0.937 25 H 0.106 0.894 26 H 0.032 0.968 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.033 0.967 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.188 -13.167 6.882 14.904 hybrid contribution -0.397 0.569 -0.411 0.807 sum 0.791 -12.598 6.471 14.184 Atomic orbital electron populations 1.70037 1.05267 1.25396 1.54181 1.25033 0.95270 0.98379 1.01016 0.86279 0.79158 0.83772 0.77603 1.21488 1.21842 1.20398 1.19213 0.92619 0.84870 1.41225 0.91681 1.44070 1.35909 1.01496 1.49898 1.20783 0.88474 0.98247 0.87891 1.22278 1.00373 0.94414 0.99798 1.21568 0.96431 0.92321 0.89859 0.95119 1.21827 0.97323 0.94437 0.97699 0.90705 1.21625 1.01162 0.95572 0.97105 1.21573 0.97802 0.98813 0.97027 1.22032 0.96875 0.90340 0.97627 1.61822 1.37464 1.06811 1.17295 1.22307 0.93920 1.04174 0.88773 1.23039 1.03018 0.95826 0.98112 1.23094 1.02656 0.93099 1.03486 1.21031 0.97496 0.86586 0.92316 0.93708 0.89363 0.96797 0.92032 0.93350 0.92048 0.92645 0.91418 0.92181 0.91346 0.95451 0.89412 0.88340 0.89109 0.89196 0.88716 0.96674 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 11.20 55.49 0.62 -25.95 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -15.11 2.99 -172.01 -0.51 -15.63 16 10 C 0.17 4.21 5.30 -3.71 -0.02 4.19 16 11 C -0.13 -2.59 5.18 -26.59 -0.14 -2.73 16 12 C 0.11 1.90 1.61 -67.66 -0.11 1.79 16 13 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 14 C -0.09 -1.67 2.34 -90.16 -0.21 -1.88 16 15 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 16 C -0.12 -1.71 5.27 -26.62 -0.14 -1.85 16 17 C -0.11 -1.47 6.09 -26.65 -0.16 -1.63 16 18 C 0.06 0.79 5.29 -3.84 -0.02 0.77 16 19 N -0.51 -7.89 4.65 -218.70 -1.02 -8.90 16 20 C 0.02 0.24 3.90 -67.72 -0.26 -0.02 16 21 C -0.16 -2.04 10.46 -26.70 -0.28 -2.32 16 22 C -0.19 -2.10 9.69 -26.70 -0.26 -2.36 16 23 C 0.15 3.28 5.82 -3.45 -0.02 3.26 16 24 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.09 2.41 6.05 -51.93 -0.31 2.09 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.05 0.90 6.79 -51.93 -0.35 0.55 16 29 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.82 6.41 -51.93 -0.33 0.48 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 1.28 7.74 -51.93 -0.40 0.88 16 36 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.04 6.92 -51.93 -0.36 0.68 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.05 1.16 7.93 -51.93 -0.41 0.75 16 LS Contribution 309.07 15.07 4.66 4.66 Total: -1.00 -29.03 309.07 -10.35 -39.38 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.22 Total: -0.56 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.85 Total: -9.94 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.91 Total: -50.48 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.03 -10.35 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134938345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.073 kcal (2) G-P(sol) polarization free energy of solvation -29.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds