Wall clock time and date at job start Sun Mar 29 2020 23:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86802 * 119.99574 * 2 1 4 4 H 1.48498 * 109.47275 * 269.99756 * 3 2 1 5 5 H 1.48498 * 109.47223 * 30.00152 * 3 2 1 6 6 H 1.48503 * 109.47092 * 149.99939 * 3 2 1 7 7 C 1.40115 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.46171 * 120.00062 * 359.97438 * 7 2 1 10 10 O 1.21741 * 119.99690 * 5.07648 * 9 7 2 11 11 N 1.34778 * 119.99862 * 185.07215 * 9 7 2 12 12 C 1.46521 * 124.94219 * 354.86320 * 11 9 7 13 13 C 1.53755 * 105.19887 * 180.02562 * 12 11 9 14 14 C 1.51212 * 104.51763 * 0.02562 * 13 12 11 15 15 C 1.38732 * 108.51476 * 359.97438 * 14 13 12 16 16 C 1.39761 * 119.02311 * 180.02562 * 15 14 13 17 17 C 1.37846 * 120.29352 * 359.97438 * 16 15 14 18 18 C 1.38285 * 120.25268 * 359.71309 * 17 16 15 19 19 C 1.38191 * 131.02280 * 179.97438 * 14 13 12 20 20 Cl 1.73598 * 119.93355 * 359.97438 * 19 14 13 21 21 H 0.96996 * 120.00637 * 359.97438 * 1 2 3 22 22 H 1.09004 * 110.29957 * 298.96484 * 12 11 9 23 23 H 1.08996 * 110.29971 * 61.00821 * 12 11 9 24 24 H 1.08998 * 110.42485 * 241.23749 * 13 12 11 25 25 H 1.09006 * 110.42464 * 118.76279 * 13 12 11 26 26 H 1.08000 * 119.85629 * 180.02562 * 16 15 14 27 27 H 1.07998 * 119.87485 * 179.97438 * 17 16 15 28 28 H 1.08001 * 120.08180 * 180.26995 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.4878 2.0465 -1.4000 5 1 1.4377 2.6527 0.7001 6 1 3.5378 1.4403 0.7001 7 6 2.0070 -1.2134 0.0005 8 1 3.0870 -1.2133 0.0001 9 6 1.2762 -2.4793 0.0017 10 8 0.0624 -2.4815 -0.0911 11 7 1.9463 -3.6441 0.1054 12 6 3.4057 -3.7748 0.1149 13 6 3.6745 -5.2826 0.2494 14 6 2.2995 -5.9092 0.3069 15 6 1.3515 -4.9001 0.2182 16 6 -0.0041 -5.2386 0.2505 17 6 -0.3890 -6.5570 0.3683 18 6 0.5634 -7.5562 0.4495 19 6 1.9085 -7.2294 0.4248 20 17 3.1064 -8.4811 0.5340 21 1 -0.4851 0.8400 0.0004 22 1 3.8252 -3.3975 -0.8177 23 1 3.8279 -3.2369 0.9637 24 1 4.2263 -5.4904 1.1662 25 1 4.2237 -5.6500 -0.6176 26 1 -0.7534 -4.4639 0.1821 27 1 -1.4384 -6.8108 0.3930 28 1 0.2588 -8.5886 0.5373 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153978071.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:27 Heat of formation + Delta-G solvation = -19.210754 kcal Electronic energy + Delta-G solvation = -15777.405121 eV Core-core repulsion = 13011.760474 eV Total energy + Delta-G solvation = -2765.644647 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.19504 -37.28842 -36.09319 -35.28586 -32.83293 -31.30228 -29.46639 -28.39665 -26.44162 -22.76078 -22.58586 -20.98357 -19.66227 -17.13682 -15.96459 -15.65281 -15.42273 -15.24772 -14.75432 -13.92085 -13.70329 -13.03488 -12.95060 -12.71466 -12.28289 -11.82518 -11.47116 -11.35042 -11.33013 -11.21476 -10.96313 -10.83693 -10.60847 -10.55922 -10.41475 -9.46010 -9.02538 -8.24790 -7.94796 -6.94677 -6.47500 -4.93812 1.64944 1.82424 2.42504 3.01094 3.08142 3.11583 3.83307 4.02050 4.12093 4.38817 4.95239 5.05910 5.35968 5.39630 5.62365 5.66704 5.76269 5.99428 6.05861 6.15301 6.24520 6.34985 6.57562 6.78161 6.91678 7.05471 7.18471 7.38596 7.86274 8.12741 8.73114 8.98944 10.20105 10.43191 Molecular weight = 251.05amu Principal moments of inertia in cm(-1) A = 0.041793 B = 0.005993 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.802502 B = 4670.872407 C = 5314.664118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.085 3.915 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.550 3.450 10 O -0.552 6.552 11 N -0.563 5.563 12 C 0.114 3.886 13 C -0.079 4.079 14 C -0.170 4.170 15 C 0.206 3.794 16 C -0.147 4.147 17 C -0.079 4.079 18 C -0.171 4.171 19 C 0.015 3.985 20 Cl -0.090 7.090 21 H 0.274 0.726 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.146 0.854 27 H 0.127 0.873 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.613 -9.646 0.914 11.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.137 4.137 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.094 0.906 9 C 0.359 3.641 10 O -0.434 6.434 11 N -0.284 5.284 12 C -0.010 4.010 13 C -0.116 4.116 14 C -0.176 4.176 15 C 0.104 3.896 16 C -0.169 4.169 17 C -0.098 4.098 18 C -0.192 4.192 19 C -0.012 4.012 20 Cl -0.061 7.061 21 H 0.085 0.915 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.164 0.836 27 H 0.145 0.855 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.891 -9.363 0.849 10.597 hybrid contribution 0.611 0.649 0.016 0.892 sum 5.502 -8.714 0.865 10.341 Atomic orbital electron populations 1.69964 1.07241 1.28133 1.33148 1.25786 0.94769 1.00674 0.92444 0.86227 0.80128 0.80577 0.79131 1.19429 1.20160 1.18632 1.20883 0.93946 0.88507 1.53161 0.90613 1.18374 0.87041 0.81162 0.77492 1.90606 1.13864 1.85177 1.53705 1.46705 1.06224 1.04479 1.71007 1.21838 0.81810 0.94851 1.02477 1.21047 0.93839 0.93978 1.02755 1.19725 0.96126 0.91239 1.10461 1.18527 0.92630 0.85865 0.92580 1.21185 0.94622 0.97054 1.04060 1.20787 0.98916 0.91763 0.98351 1.20652 0.90310 0.99718 1.08476 1.20004 0.89345 0.86918 1.04927 1.98316 1.57804 1.53288 1.96736 0.91495 0.90834 0.90632 0.89948 0.89975 0.83594 0.85465 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.48 11.84 55.55 0.66 -20.82 15 2 C 0.08 2.24 5.50 -17.36 -0.10 2.14 15 3 Si 0.92 19.01 29.56 -169.99 -5.02 13.98 15 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 7 C -0.53 -14.18 9.04 -35.70 -0.32 -14.50 15 8 H 0.08 1.83 7.11 -52.49 -0.37 1.46 15 9 C 0.55 15.23 7.70 -13.08 -0.10 15.13 15 10 O -0.55 -17.02 13.20 5.15 0.07 -16.95 15 11 N -0.56 -13.04 3.12 -114.55 -0.36 -13.39 15 12 C 0.11 2.05 6.22 -3.64 -0.02 2.03 15 13 C -0.08 -1.22 6.68 -27.24 -0.18 -1.40 15 14 C -0.17 -3.08 6.13 -104.21 -0.64 -3.72 15 15 C 0.21 4.42 6.62 -83.65 -0.55 3.87 15 16 C -0.15 -3.06 9.46 -39.16 -0.37 -3.43 15 17 C -0.08 -1.31 10.02 -39.71 -0.40 -1.71 15 18 C -0.17 -2.65 9.84 -39.49 -0.39 -3.03 15 19 C 0.02 0.25 6.32 -39.52 -0.25 0.00 15 20 Cl -0.09 -1.25 28.74 -51.86 -1.49 -2.74 15 21 H 0.27 7.01 8.29 -40.82 -0.34 6.68 15 22 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.08 1.29 8.12 -51.93 -0.42 0.87 15 24 H 0.08 1.13 8.14 -51.93 -0.42 0.70 15 25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.15 3.40 6.28 -52.49 -0.33 3.08 15 27 H 0.13 1.72 8.06 -52.49 -0.42 1.30 15 28 H 0.13 1.60 8.06 -52.49 -0.42 1.17 15 LS Contribution 261.64 15.07 3.94 3.94 Total: -1.00 -31.08 261.64 -7.90 -38.98 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -2.37 Total: 1.63 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -3.32 Total: -4.64 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.30 Total: -34.21 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.07 Total: -16.95 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.98 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.49 Total: -2.74 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.08 -7.90 -38.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153978071.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.772 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds