Wall clock time and date at job start Sun Mar 29 2020 22:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35486 * 126.98459 * 2 1 4 4 N 1.30520 * 107.31379 * 180.02562 * 3 2 1 5 5 N 1.28600 * 109.66331 * 359.73442 * 4 3 2 6 6 C 1.30518 * 109.67619 * 0.44445 * 5 4 3 7 7 C 1.50703 * 126.34609 * 179.82715 * 6 5 4 8 8 N 1.46504 * 109.46999 * 269.69188 * 7 6 5 9 9 C 1.36941 * 119.99555 * 269.99747 * 8 7 6 10 10 H 1.08002 * 119.99711 * 139.99681 * 9 8 7 11 11 C 1.38807 * 120.00265 * 319.99752 * 9 8 7 12 12 N 1.31618 * 120.00241 * 159.52701 * 11 9 8 13 13 Si 1.86807 * 120.00056 * 339.53195 * 11 9 8 14 14 H 1.48492 * 109.47424 * 95.19949 * 13 11 9 15 15 H 1.48497 * 109.47066 * 215.20524 * 13 11 9 16 16 H 1.48507 * 109.46745 * 335.19814 * 13 11 9 17 17 C 1.46501 * 120.00198 * 90.00004 * 8 7 6 18 18 C 1.54956 * 110.92272 * 130.06607 * 17 8 7 19 19 C 1.54264 * 104.16144 * 156.29462 * 18 17 8 20 20 C 1.53873 * 106.63959 * 336.44867 * 19 18 17 21 21 C 1.54267 * 106.59854 * 359.97318 * 20 19 18 22 22 H 1.08999 * 109.46906 * 269.99872 * 1 2 3 23 23 H 1.08999 * 109.46976 * 29.99266 * 1 2 3 24 24 H 1.08998 * 109.47557 * 149.99730 * 1 2 3 25 25 H 1.08002 * 126.34458 * 0.02562 * 3 2 1 26 26 H 1.08995 * 109.47154 * 149.68811 * 7 6 5 27 27 H 1.09006 * 109.47129 * 29.68469 * 7 6 5 28 28 H 0.96996 * 119.99760 * 179.97438 * 12 11 9 29 29 H 1.08998 * 110.66729 * 6.76052 * 17 8 7 30 30 H 1.08999 * 110.47975 * 37.64091 * 18 17 8 31 31 H 1.09004 * 110.53087 * 274.97113 * 18 17 8 32 32 H 1.09000 * 110.03496 * 217.13693 * 19 18 17 33 33 H 1.08999 * 110.03144 * 95.75417 * 19 18 17 34 34 H 1.09001 * 110.03896 * 119.25828 * 20 19 18 35 35 H 1.09003 * 110.03085 * 240.64190 * 20 19 18 36 36 H 1.09000 * 110.49048 * 142.29261 * 21 20 19 37 37 H 1.09007 * 110.48634 * 264.80205 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5091 0.6429 -0.0006 5 7 3.5090 -0.6431 0.0047 6 6 2.2800 -1.0824 -0.0007 7 6 1.8475 -2.5261 -0.0009 8 7 1.7069 -2.9934 -1.3823 9 6 0.5051 -2.8716 -2.0273 10 1 0.4774 -2.5811 -3.0672 11 6 -0.6775 -3.1213 -1.3447 12 7 -1.8139 -2.6356 -1.7975 13 14 -0.6560 -4.1466 0.2167 14 1 -0.5836 -3.2490 1.3974 15 1 -1.8947 -4.9623 0.2902 16 1 0.5273 -5.0437 0.2035 17 6 2.8520 -3.5912 -2.0735 18 6 2.4612 -4.9412 -2.7261 19 6 3.4901 -5.1236 -3.8610 20 6 4.0038 -3.7183 -4.2201 21 6 3.2687 -2.7298 -3.2914 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5137 24 1 -0.3634 -0.8899 -0.5139 25 1 1.9703 2.1169 0.0004 26 1 0.8909 -2.6189 0.5132 27 1 2.5961 -3.1297 0.5124 28 1 -2.6402 -2.8104 -1.3206 29 1 3.6895 -3.7221 -1.3883 30 1 1.4509 -4.8904 -3.1318 31 1 2.5428 -5.7530 -2.0032 32 1 3.0126 -5.5796 -4.7282 33 1 4.3163 -5.7471 -3.5192 34 1 5.0791 -3.6594 -4.0519 35 1 3.7762 -3.4926 -5.2619 36 1 3.9388 -1.9283 -2.9805 37 1 2.3902 -2.3196 -3.7896 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156590856.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:42 Heat of formation + Delta-G solvation = 94.570384 kcal Electronic energy + Delta-G solvation = -19458.810794 eV Core-core repulsion = 16659.068504 eV Total energy + Delta-G solvation = -2799.742289 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.36896 -37.88975 -35.06079 -34.07069 -31.94476 -30.27004 -27.94620 -27.39758 -26.93616 -25.86991 -22.91826 -21.64148 -20.27255 -19.60795 -19.34829 -17.01614 -16.25547 -15.73230 -15.57677 -15.17971 -14.48610 -14.40117 -13.77392 -13.23022 -12.88787 -12.70420 -12.67297 -12.57468 -12.04553 -11.60996 -11.10015 -10.99211 -10.87542 -10.62916 -10.54369 -10.39120 -10.38867 -9.95404 -9.81557 -9.63975 -9.62362 -9.50781 -8.71095 -8.52956 -7.01792 -6.25023 -3.70373 2.48101 3.07795 3.22097 3.30262 3.35861 3.51593 4.26599 4.81995 5.00629 5.04087 5.19276 5.32521 5.35560 5.43647 5.57242 5.60138 5.63009 6.06910 6.10825 6.14697 6.19233 6.23122 6.31608 6.33424 6.40430 6.50182 6.54097 6.67905 6.71127 6.83691 6.99494 7.04836 7.15762 7.51863 7.82910 8.21485 8.75545 9.39672 9.44148 9.88636 10.88381 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.015731 B = 0.012372 C = 0.008148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.507159 B = 2262.722521 C = 3435.432116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.459 5.459 3 C 0.122 3.878 4 N -0.310 5.310 5 N -0.313 5.313 6 C 0.188 3.812 7 C 0.210 3.790 8 N -0.584 5.584 9 C -0.261 4.261 10 H 0.083 0.917 11 C 0.038 3.962 12 N -0.894 5.894 13 Si 0.861 3.139 14 H -0.285 1.285 15 H -0.296 1.296 16 H -0.261 1.261 17 C 0.175 3.825 18 C -0.131 4.131 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.132 4.132 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.130 0.870 25 H 0.206 0.794 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.266 0.734 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.736 0.743 1.671 4.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.149 5.149 3 C -0.166 4.166 4 N -0.150 5.150 5 N -0.154 5.154 6 C -0.083 4.083 7 C 0.081 3.919 8 N -0.303 5.303 9 C -0.390 4.390 10 H 0.101 0.899 11 C -0.163 4.163 12 N -0.534 5.534 13 Si 0.690 3.310 14 H -0.213 1.213 15 H -0.223 1.223 16 H -0.185 1.185 17 C 0.069 3.931 18 C -0.170 4.170 19 C -0.159 4.159 20 C -0.158 4.158 21 C -0.172 4.172 22 H 0.085 0.915 23 H 0.101 0.899 24 H 0.148 0.852 25 H 0.223 0.777 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.006 0.732 1.673 5.329 hybrid contribution -1.744 -0.206 0.779 1.921 sum 3.262 0.525 2.452 4.115 Atomic orbital electron populations 1.22408 0.75111 1.07816 1.03074 1.46148 1.09381 1.06512 1.52819 1.26164 0.87791 0.94864 1.07747 1.74076 1.18215 1.04071 1.18644 1.74123 1.17798 1.02713 1.20816 1.26643 0.86779 0.94135 1.00725 1.19874 0.99638 0.83386 0.89007 1.44167 1.09118 1.66472 1.10573 1.18731 0.81126 1.41453 0.97651 0.89936 1.25510 0.95205 0.97597 0.97986 1.69855 0.98712 1.43923 1.40915 0.87174 0.77830 0.82510 0.83485 1.21310 1.22345 1.18482 1.21449 0.88708 0.90712 0.92277 1.22680 1.00118 0.97584 0.96586 1.22054 0.98496 0.96616 0.98719 1.22042 0.99153 0.95508 0.99142 1.22693 0.99621 0.97589 0.97263 0.91480 0.89939 0.85155 0.77694 0.91301 0.90404 0.92373 0.91884 0.89779 0.93034 0.92691 0.92892 0.92810 0.92843 0.92900 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 10.90 59.85 0.65 1.65 16 2 N -0.46 -8.69 3.15 -122.69 -0.39 -9.08 16 3 C 0.12 2.15 12.74 -89.95 -1.15 1.00 16 4 N -0.31 -6.42 12.21 29.69 0.36 -6.06 16 5 N -0.31 -6.89 12.21 32.80 0.40 -6.48 16 6 C 0.19 3.95 7.61 -154.99 -1.18 2.77 16 7 C 0.21 4.40 4.66 -5.19 -0.02 4.37 16 8 N -0.58 -12.73 2.08 -164.72 -0.34 -13.08 16 9 C -0.26 -6.35 7.61 -15.06 -0.11 -6.46 16 10 H 0.08 2.26 7.07 -52.49 -0.37 1.88 16 11 C 0.04 0.93 3.53 -17.43 -0.06 0.87 16 12 N -0.89 -23.41 13.80 55.49 0.77 -22.64 16 13 Si 0.86 19.45 25.04 -169.99 -4.26 15.19 16 14 H -0.29 -6.18 6.69 56.52 0.38 -5.80 16 15 H -0.30 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 17 C 0.18 3.44 3.43 -65.90 -0.23 3.21 16 18 C -0.13 -2.39 6.33 -25.04 -0.16 -2.55 16 19 C -0.12 -1.86 6.80 -25.62 -0.17 -2.04 16 20 C -0.12 -1.91 6.80 -25.61 -0.17 -2.08 16 21 C -0.13 -2.51 6.41 -25.07 -0.16 -2.68 16 22 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.13 2.70 5.00 -51.93 -0.26 2.44 16 25 H 0.21 2.58 8.06 -52.49 -0.42 2.15 16 26 H 0.07 1.48 3.16 -51.93 -0.16 1.31 16 27 H 0.08 1.51 7.91 -51.93 -0.41 1.10 16 28 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.06 1.21 7.84 -51.93 -0.41 0.80 16 30 H 0.08 1.74 7.00 -51.93 -0.36 1.37 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.46 6.82 -51.92 -0.35 1.11 16 LS Contribution 292.52 15.07 4.41 4.41 Total: -1.00 -27.97 292.52 -7.11 -35.08 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.29 Total: 4.59 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.77 Total: -1.93 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.80 Total: -57.34 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.26 Total: 15.19 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -27.97 -7.11 -35.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156590856.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.647 kcal (2) G-P(sol) polarization free energy of solvation -27.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds