Wall clock time and date at job start Sun Mar 29 2020 22:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.35506 * 126.97925 * 2 1 4 4 N 1.30517 * 107.30390 * 180.22388 * 3 2 1 5 5 N 1.28592 * 109.67753 * 359.77002 * 4 3 2 6 6 C 1.30521 * 109.67310 * 0.02562 * 5 4 3 7 7 C 1.50700 * 126.34733 * 179.97438 * 6 5 4 8 8 H 1.09007 * 110.45905 * 192.60728 * 7 6 5 9 9 C 1.54375 * 110.41507 * 70.19653 * 7 6 5 10 10 C 1.54255 * 105.06232 * 217.37161 * 9 7 6 11 11 C 1.54380 * 105.06019 * 359.97438 * 10 9 7 12 12 N 1.48554 * 110.41056 * 315.01868 * 7 6 5 13 13 C 1.46898 * 111.00248 * 277.81893 * 12 7 6 14 14 C 1.53005 * 109.47342 * 169.99906 * 13 12 7 15 15 C 1.50695 * 109.47088 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00496 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99572 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 H 1.08995 * 109.47565 * 270.15910 * 1 2 3 24 24 H 1.09005 * 109.47388 * 30.16037 * 1 2 3 25 25 H 1.09000 * 109.47004 * 150.15475 * 1 2 3 26 26 H 1.07994 * 126.34581 * 359.97438 * 3 2 1 27 27 H 1.09005 * 110.31885 * 336.26474 * 9 7 6 28 28 H 1.09003 * 110.32630 * 98.36404 * 9 7 6 29 29 H 1.08999 * 110.32851 * 118.89201 * 10 9 7 30 30 H 1.09006 * 110.32050 * 241.10338 * 10 9 7 31 31 H 1.09002 * 110.40911 * 265.07854 * 11 10 9 32 32 H 1.08997 * 110.41301 * 142.63657 * 11 10 9 33 33 H 1.09002 * 109.47032 * 50.00055 * 13 12 7 34 34 H 1.09001 * 109.47520 * 289.99905 * 13 12 7 35 35 H 1.09002 * 109.46935 * 60.00090 * 14 13 12 36 36 H 1.08998 * 109.47061 * 300.00883 * 14 13 12 37 37 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2800 1.0825 0.0000 4 7 3.5090 0.6431 -0.0049 5 7 3.5091 -0.6429 -0.0030 6 6 2.2801 -1.0823 0.0025 7 6 1.8477 -2.5260 0.0058 8 1 0.7827 -2.6053 -0.2126 9 6 2.1685 -3.1811 1.3664 10 6 2.6115 -4.6186 1.0246 11 6 2.5205 -4.7113 -0.5137 12 7 2.6384 -3.3058 -0.9809 13 6 2.0887 -3.1533 -2.3346 14 6 3.0601 -3.7575 -3.3506 15 6 2.4964 -3.6005 -4.7393 16 1 1.5411 -3.1178 -4.8830 17 6 3.2003 -4.0733 -5.8265 18 7 4.3634 -4.6616 -5.6516 19 14 2.5020 -3.8781 -7.5480 20 1 2.3108 -2.4355 -7.8441 21 1 1.1954 -4.5786 -7.6346 22 1 3.4448 -4.4646 -8.5342 23 1 -0.3634 0.0029 1.0276 24 1 -0.3634 0.8886 -0.5163 25 1 -0.3633 -0.8914 -0.5114 26 1 1.9702 2.1170 -0.0004 27 1 2.9762 -2.6442 1.8639 28 1 1.2801 -3.1969 1.9978 29 1 3.6366 -4.7874 1.3544 30 1 1.9400 -5.3418 1.4875 31 1 1.5608 -5.1327 -0.8130 32 1 3.3400 -5.3125 -0.9075 33 1 1.9472 -2.0947 -2.5522 34 1 1.1301 -3.6685 -2.3977 35 1 3.2015 -4.8162 -3.1330 36 1 4.0186 -3.2425 -3.2875 37 1 4.7263 -4.7626 -4.7576 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157062661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:51 Heat of formation + Delta-G solvation = 53.609562 kcal Electronic energy + Delta-G solvation = -18615.729457 eV Core-core repulsion = 15814.210973 eV Total energy + Delta-G solvation = -2801.518484 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.07964 -40.08954 -36.11494 -35.93921 -33.69779 -32.51543 -30.12203 -29.23168 -28.36692 -26.08835 -24.12891 -23.37172 -22.95278 -21.57210 -20.98725 -18.96784 -18.18299 -17.24903 -17.02338 -16.71369 -16.02842 -15.67149 -15.57100 -14.98516 -14.87928 -14.42315 -14.26515 -13.73738 -13.65069 -13.41281 -12.99337 -12.79450 -12.58870 -12.45149 -12.20065 -12.07430 -11.92223 -11.76035 -11.52151 -11.26968 -11.07463 -10.78436 -10.58189 -10.22365 -9.49581 -8.74198 -6.44913 0.83846 1.48558 1.57769 1.58453 1.77720 1.91477 2.53381 2.95339 3.12367 3.21409 3.57900 3.74255 3.81225 3.86243 3.90437 4.14169 4.23551 4.33242 4.36744 4.50135 4.50951 4.62520 4.69362 4.81198 4.82831 4.89648 4.97639 5.10427 5.16760 5.19273 5.22901 5.34956 5.80334 5.86799 6.01701 6.07060 6.13538 6.50532 7.39245 7.80820 8.66576 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.020932 B = 0.006140 C = 0.005333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.361356 B = 4559.307639 C = 5249.554392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.476 5.476 3 C 0.159 3.841 4 N -0.359 5.359 5 N -0.322 5.322 6 C 0.184 3.816 7 C 0.145 3.855 8 H 0.088 0.912 9 C -0.101 4.101 10 C -0.110 4.110 11 C 0.033 3.967 12 N -0.520 5.520 13 C 0.087 3.913 14 C 0.027 3.973 15 C -0.622 4.622 16 H 0.052 0.948 17 C -0.040 4.040 18 N -0.935 5.935 19 Si 1.121 2.879 20 H -0.271 1.271 21 H -0.262 1.262 22 H -0.282 1.282 23 H 0.110 0.890 24 H 0.119 0.881 25 H 0.089 0.911 26 H 0.265 0.735 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.038 0.962 35 H -0.007 1.007 36 H -0.026 1.026 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.045 7.061 16.047 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.167 5.167 3 C -0.129 4.129 4 N -0.197 5.197 5 N -0.161 5.161 6 C -0.086 4.086 7 C 0.034 3.966 8 H 0.106 0.894 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.095 4.095 12 N -0.245 5.245 13 C -0.041 4.041 14 C -0.010 4.010 15 C -0.661 4.661 16 H 0.071 0.929 17 C -0.237 4.237 18 N -0.572 5.572 19 Si 0.940 3.060 20 H -0.196 1.196 21 H -0.186 1.186 22 H -0.207 1.207 23 H 0.128 0.872 24 H 0.138 0.862 25 H 0.107 0.893 26 H 0.280 0.720 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.011 0.989 36 H -0.007 1.007 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.709 6.948 14.431 20.446 hybrid contribution -1.756 0.195 1.283 2.184 sum -14.465 7.143 15.714 22.521 Atomic orbital electron populations 1.22537 0.72421 1.06703 1.06213 1.46489 1.10868 1.05545 1.53797 1.27254 0.86364 0.96503 1.02779 1.74172 1.21096 1.03683 1.20795 1.74200 1.19454 1.03272 1.19152 1.24724 0.87175 0.92673 1.03984 1.20993 0.96282 0.84010 0.95279 0.89425 1.22294 1.02797 0.95389 0.93508 1.22279 1.03001 0.96660 0.92874 1.23141 1.00732 0.88857 0.96731 1.65138 1.50701 1.07607 1.01040 1.21868 0.95880 0.98484 0.87840 1.18963 0.94117 0.93984 0.93972 1.22421 1.07667 1.42438 0.93531 0.92924 1.27571 0.94537 0.92557 1.09014 1.70901 1.19094 1.42187 1.25000 0.82923 0.75683 0.77474 0.69880 1.19628 1.18628 1.20734 0.87161 0.86242 0.89265 0.71952 0.92018 0.87253 0.91182 0.87742 0.92757 0.92026 0.94198 0.94382 0.98875 1.00721 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 11.00 127.77 1.41 2.06 16 2 N -0.48 -10.97 3.15 -542.08 -1.71 -12.68 16 3 C 0.16 3.90 12.74 180.11 2.30 6.19 16 4 N -0.36 -13.22 12.21 -59.99 -0.73 -13.96 16 5 N -0.32 -13.16 12.21 -50.15 -0.61 -13.77 16 6 C 0.18 5.92 6.41 137.98 0.89 6.81 16 7 C 0.15 4.17 2.65 44.32 0.12 4.28 16 8 H 0.09 2.04 6.80 -2.38 -0.02 2.02 16 9 C -0.10 -2.28 6.54 31.49 0.21 -2.08 16 10 C -0.11 -2.53 7.00 31.49 0.22 -2.31 16 11 C 0.03 1.05 5.91 86.45 0.51 1.56 16 12 N -0.52 -19.94 5.01 -860.97 -4.31 -24.25 16 13 C 0.09 3.90 4.71 86.31 0.41 4.31 16 14 C 0.03 1.54 4.40 29.85 0.13 1.67 16 15 C -0.62 -37.37 9.11 25.60 0.23 -37.14 16 16 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 17 C -0.04 -2.39 5.46 84.66 0.46 -1.93 16 18 N -0.93 -61.17 13.65 21.45 0.29 -60.87 16 19 Si 1.12 51.64 29.90 68.60 2.05 53.69 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 23 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.09 0.98 7.10 -2.39 -0.02 0.96 16 26 H 0.26 3.20 8.06 -2.91 -0.02 3.18 16 27 H 0.06 1.63 7.85 -2.38 -0.02 1.62 16 28 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.05 1.61 7.75 -2.39 -0.02 1.59 16 32 H 0.06 2.25 7.85 -2.39 -0.02 2.23 16 33 H 0.04 1.86 7.78 -2.39 -0.02 1.84 16 34 H 0.04 1.57 7.77 -2.39 -0.02 1.55 16 35 H -0.01 -0.41 7.33 -2.39 -0.02 -0.43 16 36 H -0.03 -1.65 8.01 -2.39 -0.02 -1.67 16 37 H 0.25 17.05 7.22 -92.70 -0.67 16.38 16 Total: -1.00 -86.43 305.37 3.00 -83.43 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: 1.15 Total: 4.98 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 6.87 Total: -16.58 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -7.07 Total: -125.53 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.05 Total: 53.69 kcal Total: -86.43 3.00 -83.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157062661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.042 kcal (2) G-P(sol) polarization free energy of solvation -86.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds