Wall clock time and date at job start Sun Mar 29 2020 23:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.36662 * 122.94885 * 7.87369 * 3 2 1 5 5 S 1.70590 * 110.54849 * 180.22105 * 4 3 2 6 6 C 1.75698 * 91.85030 * 359.68389 * 5 4 3 7 7 C 1.46527 * 125.06826 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99707 * 180.30899 * 7 6 5 9 9 O 1.34880 * 120.00052 * 0.31012 * 7 6 5 10 10 C 1.45196 * 116.99925 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47227 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47286 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99805 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99968 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99969 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99822 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47346 * 59.99400 * 16 14 12 18 18 H 1.48500 * 109.47197 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47287 * 299.99589 * 16 14 12 20 20 C 1.35045 * 109.85874 * 0.31802 * 6 5 4 21 21 H 1.08002 * 124.72277 * 359.94897 * 4 3 2 22 22 H 1.09000 * 109.47478 * 300.00404 * 10 9 7 23 23 H 1.09004 * 109.46995 * 60.00551 * 10 9 7 24 24 H 1.09008 * 109.47099 * 300.00305 * 11 10 9 25 25 H 1.08999 * 109.47293 * 60.00101 * 11 10 9 26 26 H 0.96996 * 120.00307 * 180.02562 * 15 14 12 27 27 H 1.08000 * 123.17997 * 179.80605 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3118 -1.1350 -0.1571 5 16 4.9778 -0.7723 -0.1008 6 6 4.6553 0.9396 0.1288 7 6 5.6797 1.9773 0.2728 8 8 5.3518 3.1372 0.4336 9 8 6.9864 1.6460 0.2269 10 6 7.9458 2.7256 0.3761 11 6 9.3655 2.1607 0.2986 12 6 10.3613 3.2811 0.4541 13 1 10.0160 4.2948 0.5938 14 6 11.7131 3.0122 0.4169 15 7 12.1335 1.7778 0.2463 16 14 12.9473 4.4011 0.6090 17 1 12.7488 5.0614 1.9242 18 1 14.3253 3.8527 0.5338 19 1 12.7490 5.3933 -0.4779 20 6 3.3226 1.1553 0.1591 21 1 2.9020 -2.1249 -0.2932 22 1 7.8001 3.4541 -0.4216 23 1 7.8002 3.2101 1.3417 24 1 9.5109 1.4324 1.0966 25 1 9.5114 1.6758 -0.6667 26 1 13.0844 1.5885 0.2205 27 1 2.8851 2.1335 0.2937 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175852821.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:12 Heat of formation + Delta-G solvation = -51.680719 kcal Electronic energy + Delta-G solvation = -14535.176204 eV Core-core repulsion = 11770.167260 eV Total energy + Delta-G solvation = -2765.008944 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 251.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.41862 -39.56600 -37.71607 -36.95542 -35.41930 -32.50598 -31.35057 -27.44930 -26.59697 -24.64907 -22.79058 -21.09502 -20.12759 -18.59665 -18.18307 -17.68355 -17.57304 -17.01005 -16.44043 -15.47589 -15.07333 -14.96551 -14.60896 -14.35629 -14.33758 -13.74702 -13.55140 -13.43378 -13.09903 -13.04519 -12.58692 -12.57067 -12.10970 -11.90974 -11.56818 -11.47961 -11.40162 -10.57367 -10.18553 -9.70196 -8.24003 -6.36491 -0.79233 0.25313 0.41245 0.67255 1.42452 1.47008 1.48775 1.55698 1.62994 1.72914 2.38880 2.42588 2.97067 3.10804 3.64830 3.87978 4.16445 4.25771 4.26698 4.53643 4.71947 4.83738 4.87439 5.24776 5.49820 5.51136 5.76230 6.09719 6.39916 6.59408 6.76751 7.32992 8.88018 Molecular weight = 251.04amu Principal moments of inertia in cm(-1) A = 0.059811 B = 0.003761 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.031438 B = 7443.241483 C = 7890.825112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.302 3.698 3 C -0.078 4.078 4 C -0.156 4.156 5 S 0.374 5.626 6 C -0.293 4.293 7 C 0.531 3.469 8 O -0.533 6.533 9 O -0.358 6.358 10 C 0.092 3.908 11 C 0.031 3.969 12 C -0.552 4.552 13 H 0.064 0.936 14 C 0.009 3.991 15 N -0.924 5.924 16 Si 0.970 3.030 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.267 1.267 20 C -0.004 4.004 21 H 0.224 0.776 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.268 0.732 27 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.604 -8.183 -1.120 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.015 4.015 3 C -0.095 4.095 4 C -0.299 4.299 5 S 0.643 5.357 6 C -0.411 4.411 7 C 0.377 3.623 8 O -0.425 6.425 9 O -0.275 6.275 10 C 0.019 3.981 11 C -0.006 4.006 12 C -0.589 4.589 13 H 0.082 0.918 14 C -0.190 4.190 15 N -0.563 5.563 16 Si 0.794 3.206 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.192 1.192 20 C -0.037 4.037 21 H 0.241 0.759 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.076 0.924 27 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.891 -8.818 -1.199 17.348 hybrid contribution -0.147 1.771 0.236 1.792 sum -15.038 -7.047 -0.963 16.636 Atomic orbital electron populations 1.81308 1.12896 1.08280 1.11097 1.24974 0.91638 0.92730 0.92129 1.14782 0.85127 0.93558 1.15998 1.26762 0.99846 1.04145 0.99124 1.83765 0.98902 0.94129 1.58897 1.23007 0.95208 0.99901 1.23030 1.20123 0.82326 0.87221 0.72639 1.90851 1.82964 1.21466 1.47216 1.86564 1.15858 1.42336 1.82701 1.23247 0.86705 0.87053 1.01076 1.18988 0.88027 0.96576 0.97034 1.21347 0.91696 0.94426 1.51478 0.91755 1.25895 1.00507 0.98409 0.94223 1.70067 1.15839 1.20661 1.49713 0.85426 0.77276 0.78706 0.79201 1.19211 1.20552 1.19204 1.20290 0.90110 1.00194 0.93117 0.75949 0.91900 0.91909 0.97135 0.97133 0.92365 0.82105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.84 18.54 19.00 0.35 -10.49 15 2 C 0.30 5.58 15.55 88.33 1.37 6.95 15 3 C -0.08 -1.16 5.67 -22.26 -0.13 -1.28 15 4 C -0.16 -1.47 10.82 67.45 0.73 -0.74 15 5 S 0.37 5.42 22.87 -56.49 -1.29 4.13 15 6 C -0.29 -6.71 6.38 23.70 0.15 -6.56 15 7 C 0.53 17.45 7.93 69.98 0.55 18.00 15 8 O -0.53 -20.27 16.59 19.47 0.32 -19.94 15 9 O -0.36 -13.30 10.06 -57.94 -0.58 -13.88 15 10 C 0.09 3.93 5.42 71.98 0.39 4.32 15 11 C 0.03 1.58 5.35 29.85 0.16 1.74 15 12 C -0.55 -30.28 9.11 25.60 0.23 -30.05 15 13 H 0.06 3.38 7.74 -2.91 -0.02 3.36 15 14 C 0.01 0.50 5.46 84.66 0.46 0.96 15 15 N -0.92 -53.58 13.29 21.45 0.28 -53.30 15 16 Si 0.97 42.51 29.54 68.60 2.03 44.54 15 17 H -0.27 -11.30 7.11 99.48 0.71 -10.60 15 18 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 20 C 0.00 -0.07 9.72 21.68 0.21 0.14 15 21 H 0.22 0.38 8.06 -2.91 -0.02 0.35 15 22 H 0.06 2.65 8.14 -2.39 -0.02 2.63 15 23 H 0.06 2.65 8.14 -2.38 -0.02 2.63 15 24 H 0.01 0.56 8.14 -2.38 -0.02 0.54 15 25 H 0.01 0.56 8.14 -2.39 -0.02 0.54 15 26 H 0.27 14.54 8.31 -92.71 -0.77 13.77 15 27 H 0.16 3.09 8.03 -2.91 -0.02 3.06 15 Total: -1.00 -67.48 278.29 6.45 -61.02 By element: Atomic # 1 Polarization: -6.76 SS G_CDS: 1.20 Total: -5.55 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 4.14 Total: -6.52 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: 0.64 Total: -63.78 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.26 Total: -33.83 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 5.42 SS G_CDS: -1.29 Total: 4.13 kcal Total: -67.48 6.45 -61.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175852821.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.343 kcal (2) G-P(sol) polarization free energy of solvation -67.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds