Wall clock time and date at job start Sun Mar 29 2020 22:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35495 * 126.98026 * 2 1 4 4 N 1.30522 * 107.31116 * 179.83645 * 3 2 1 5 5 N 1.28598 * 109.66613 * 0.43765 * 4 3 2 6 6 C 1.30522 * 109.67667 * 359.72458 * 5 4 3 7 7 C 1.50700 * 126.34559 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.47112 * 270.04113 * 7 6 5 9 9 C 1.46893 * 110.99821 * 170.00382 * 8 7 6 10 10 C 1.50696 * 109.47219 * 284.35826 * 9 8 7 11 11 H 1.08005 * 119.99736 * 4.81267 * 10 9 8 12 12 C 1.37878 * 120.00744 * 184.81687 * 10 9 8 13 13 N 1.31523 * 119.99395 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00494 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47028 * 89.99918 * 14 12 10 16 16 H 1.48509 * 109.47192 * 209.99919 * 14 12 10 17 17 H 1.48501 * 109.47140 * 329.99685 * 14 12 10 18 18 C 1.46899 * 110.99414 * 293.95455 * 8 7 6 19 19 C 1.53004 * 109.46996 * 167.71363 * 18 8 7 20 20 C 1.52994 * 117.49878 * 245.08724 * 19 18 8 21 21 C 1.52998 * 117.50142 * 176.42527 * 19 18 8 22 22 H 1.09004 * 109.46723 * 269.68595 * 1 2 3 23 23 H 1.09000 * 109.46892 * 149.68876 * 1 2 3 24 24 H 1.08994 * 109.47378 * 29.68214 * 1 2 3 25 25 H 1.08003 * 126.34505 * 359.97438 * 3 2 1 26 26 H 1.09006 * 109.47204 * 30.04061 * 7 6 5 27 27 H 1.08994 * 109.47113 * 150.03786 * 7 6 5 28 28 H 1.08994 * 109.47633 * 44.35758 * 9 8 7 29 29 H 1.09001 * 109.47253 * 164.36089 * 9 8 7 30 30 H 0.96992 * 119.99858 * 179.97438 * 13 12 10 31 31 H 1.09004 * 109.47123 * 287.70558 * 18 8 7 32 32 H 1.08997 * 109.47914 * 47.71278 * 18 8 7 33 33 H 1.09003 * 115.54986 * 30.75339 * 19 18 8 34 34 H 1.09004 * 117.50167 * 359.97438 * 20 19 18 35 35 H 1.09000 * 117.50541 * 145.01526 * 20 19 18 36 36 H 1.09004 * 117.49955 * 214.97639 * 21 19 18 37 37 H 1.08994 * 117.49669 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6431 0.0036 5 7 3.5091 -0.6429 -0.0035 6 6 2.2800 -1.0823 -0.0059 7 6 1.8477 -2.5260 -0.0144 8 7 1.7081 -2.9872 -1.4021 9 6 1.5205 -4.4430 -1.4566 10 6 2.8382 -5.1291 -1.2036 11 1 3.7095 -4.5460 -0.9440 12 6 2.9317 -6.5011 -1.3036 13 7 1.8706 -7.2111 -1.6194 14 14 4.5652 -7.3513 -0.9906 15 1 4.6751 -7.6975 0.4492 16 1 4.6422 -8.5908 -1.8051 17 1 5.6769 -6.4417 -1.3674 18 6 0.6081 -2.2889 -2.0806 19 6 0.6830 -2.5594 -3.5847 20 6 0.9703 -1.3699 -4.5030 21 6 -0.4309 -1.9849 -4.4622 22 1 -0.3633 -0.0056 1.0277 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3634 0.8928 -0.5089 25 1 1.9701 2.1170 -0.0004 26 1 2.5958 -3.1323 0.4964 27 1 0.8907 -2.6216 0.4983 28 1 0.8014 -4.7456 -0.6955 29 1 1.1475 -4.7248 -2.4413 30 1 1.9363 -8.1762 -1.6901 31 1 -0.3449 -2.6498 -1.6937 32 1 0.6913 -1.2173 -1.8997 33 1 1.0991 -3.5261 -3.8683 34 1 1.1055 -0.3944 -4.0357 35 1 1.5751 -1.5539 -5.3909 36 1 -0.7473 -2.5734 -5.3234 37 1 -1.2168 -1.4138 -3.9681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176252079.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:22 Heat of formation + Delta-G solvation = 98.340077 kcal Electronic energy + Delta-G solvation = -18705.274853 eV Core-core repulsion = 15905.696030 eV Total energy + Delta-G solvation = -2799.578823 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.05672 -39.41659 -37.13854 -35.91406 -34.65339 -32.21014 -29.58456 -28.90223 -27.96257 -25.86015 -23.46627 -23.22583 -23.14715 -21.73020 -20.83098 -18.62925 -18.04931 -17.48305 -16.92843 -16.61335 -16.15898 -15.99165 -15.51468 -14.98709 -14.54860 -14.41474 -14.15083 -13.90896 -13.67965 -13.13574 -13.07730 -12.64283 -12.52795 -12.45188 -12.39256 -12.26350 -11.77756 -11.35823 -11.24830 -11.17491 -11.04983 -10.86651 -10.57042 -10.23388 -9.06055 -8.18899 -6.26731 0.87563 1.40705 1.41623 1.54170 1.63637 1.93412 2.41816 2.86930 3.12780 3.25204 3.39637 3.74283 3.83088 3.89640 3.99249 4.05961 4.21432 4.32924 4.36560 4.53914 4.60568 4.65946 4.69025 4.75029 4.81085 4.91943 5.00751 5.13289 5.20899 5.24330 5.25033 5.36413 5.68056 6.01096 6.07857 6.26845 6.56971 6.87764 7.42172 7.82709 8.90902 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.007382 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.145119 B = 3792.302247 C = 4765.224994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.472 5.472 3 C 0.164 3.836 4 N -0.352 5.352 5 N -0.332 5.332 6 C 0.191 3.809 7 C 0.152 3.848 8 N -0.540 5.540 9 C 0.213 3.787 10 C -0.521 4.521 11 H 0.053 0.947 12 C 0.010 3.990 13 N -0.929 5.929 14 Si 0.957 3.043 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.274 1.274 18 C 0.086 3.914 19 C -0.170 4.170 20 C -0.172 4.172 21 C -0.156 4.156 22 H 0.103 0.897 23 H 0.086 0.914 24 H 0.131 0.869 25 H 0.268 0.732 26 H 0.086 0.914 27 H 0.063 0.937 28 H -0.025 1.025 29 H 0.021 0.979 30 H 0.264 0.736 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 16.124 0.701 19.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.163 5.163 3 C -0.124 4.124 4 N -0.190 5.190 5 N -0.172 5.172 6 C -0.079 4.079 7 C 0.022 3.978 8 N -0.265 5.265 9 C 0.088 3.912 10 C -0.560 4.560 11 H 0.071 0.929 12 C -0.188 4.188 13 N -0.570 5.570 14 Si 0.783 3.217 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.199 1.199 18 C -0.041 4.041 19 C -0.189 4.189 20 C -0.209 4.209 21 C -0.193 4.193 22 H 0.121 0.879 23 H 0.105 0.895 24 H 0.149 0.851 25 H 0.284 0.716 26 H 0.104 0.896 27 H 0.081 0.919 28 H -0.008 1.008 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.199 16.063 0.439 18.040 hybrid contribution -1.052 -1.162 0.451 1.631 sum -9.251 14.901 0.890 17.562 Atomic orbital electron populations 1.22689 0.72938 1.07014 1.06152 1.46461 1.10546 1.05613 1.53660 1.27270 0.86216 0.96384 1.02560 1.74140 1.20999 1.03153 1.20734 1.74204 1.19295 1.03914 1.19819 1.24709 0.87224 0.92553 1.03377 1.20158 1.00800 0.85488 0.91351 1.61872 1.44005 1.07170 1.13484 1.19397 0.95056 0.81474 0.95308 1.21459 0.96511 0.91709 1.46278 0.92913 1.25713 0.99926 0.98090 0.95117 1.70042 1.30506 1.06729 1.49741 0.85560 0.79975 0.77791 0.78398 1.19693 1.20506 1.19902 1.21875 0.91736 0.98190 0.92329 1.22223 1.05559 0.98243 0.92878 1.22958 0.99593 0.96843 1.01519 1.23048 0.91622 1.03037 1.01584 0.87870 0.89529 0.85095 0.71605 0.89589 0.91884 1.00757 0.96049 0.92684 0.94390 0.90089 0.90517 0.88672 0.89287 0.88244 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 10.03 127.77 1.28 1.94 16 2 N -0.47 -11.15 2.74 -542.08 -1.49 -12.64 16 3 C 0.16 3.79 12.74 180.11 2.30 6.09 16 4 N -0.35 -12.45 12.21 -59.99 -0.73 -13.18 16 5 N -0.33 -13.80 12.21 -50.16 -0.61 -14.41 16 6 C 0.19 6.67 6.69 137.98 0.92 7.59 16 7 C 0.15 5.79 5.03 85.56 0.43 6.22 16 8 N -0.54 -22.89 4.40 -905.39 -3.98 -26.87 16 9 C 0.21 10.95 4.57 85.56 0.39 11.35 16 10 C -0.52 -29.92 8.61 25.60 0.22 -29.70 16 11 H 0.05 3.12 7.65 -2.91 -0.02 3.10 16 12 C 0.01 0.57 5.46 84.65 0.46 1.03 16 13 N -0.93 -55.18 13.29 21.45 0.28 -54.89 16 14 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 15 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 17 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 18 C 0.09 2.83 3.81 86.30 0.33 3.16 16 19 C -0.17 -5.70 5.57 -10.79 -0.06 -5.76 16 20 C -0.17 -4.70 10.18 30.62 0.31 -4.39 16 21 C -0.16 -3.73 10.25 30.62 0.31 -3.42 16 22 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 23 H 0.09 1.31 4.98 -2.39 -0.01 1.30 16 24 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.27 2.71 8.06 -2.91 -0.02 2.68 16 26 H 0.09 3.79 7.31 -2.38 -0.02 3.77 16 27 H 0.06 2.04 7.83 -2.39 -0.02 2.02 16 28 H -0.03 -1.35 8.00 -2.39 -0.02 -1.37 16 29 H 0.02 1.19 6.17 -2.39 -0.01 1.17 16 30 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.04 1.17 7.80 -2.38 -0.02 1.15 16 32 H 0.08 2.26 4.40 -2.39 -0.01 2.25 16 33 H 0.08 3.22 6.59 -2.39 -0.02 3.20 16 34 H 0.09 2.39 8.04 -2.38 -0.02 2.37 16 35 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.10 2.24 8.14 -2.39 -0.02 2.23 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -76.09 304.51 3.45 -72.63 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 1.06 Total: 7.58 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 6.90 Total: -5.89 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -6.53 Total: -122.00 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -76.09 3.45 -72.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176252079.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.973 kcal (2) G-P(sol) polarization free energy of solvation -76.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds