Wall clock time and date at job start Sun Mar 29 2020 22:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 108.75536 * 2 1 4 4 C 1.50532 * 108.78914 * 118.35656 * 2 1 3 5 5 C 1.54527 * 108.85806 * 212.64384 * 4 2 1 6 6 C 1.45874 * 111.67473 * 282.75410 * 5 4 2 7 7 C 1.53979 * 112.66381 * 61.49791 * 6 5 4 8 8 N 1.44304 * 108.35520 * 278.59001 * 7 6 5 9 9 C 1.46903 * 111.00071 * 221.36866 * 8 7 6 10 10 C 1.53006 * 109.46917 * 164.20614 * 9 8 7 11 11 H 1.09002 * 109.46887 * 55.57417 * 10 9 8 12 12 C 1.47201 * 109.47200 * 295.57277 * 10 9 8 13 13 N 5.48091 * 116.16254 * 196.41555 * 2 1 3 14 14 C 1.53002 * 109.46584 * 175.57226 * 10 9 8 15 15 C 1.50704 * 109.46755 * 185.00147 * 14 10 9 16 16 H 1.07996 * 120.00108 * 0.02562 * 15 14 10 17 17 C 1.37875 * 119.99985 * 179.97438 * 15 14 10 18 18 N 1.31519 * 119.99900 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00173 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46909 * 90.00413 * 19 17 15 21 21 H 1.48498 * 109.47249 * 210.00692 * 19 17 15 22 22 H 1.48498 * 109.47098 * 330.00852 * 19 17 15 23 23 C 1.47987 * 113.63299 * 95.34260 * 8 7 6 24 24 H 1.08999 * 109.46981 * 301.64784 * 1 2 3 25 25 H 1.09000 * 109.47314 * 61.64607 * 1 2 3 26 26 H 1.08997 * 109.47266 * 181.64464 * 1 2 3 27 27 H 1.09001 * 109.57507 * 92.83744 * 4 2 1 28 28 H 1.08994 * 109.67916 * 332.51508 * 4 2 1 29 29 H 1.08995 * 109.03925 * 162.18475 * 5 4 2 30 30 H 1.09005 * 109.03799 * 43.31532 * 5 4 2 31 31 H 1.09000 * 108.84113 * 300.67449 * 6 5 4 32 32 H 1.09002 * 108.83924 * 182.31929 * 6 5 4 33 33 H 1.09004 * 109.69725 * 38.31361 * 7 6 5 34 34 H 1.08998 * 109.69703 * 158.86259 * 7 6 5 35 35 H 1.08997 * 109.47041 * 284.20720 * 9 8 7 36 36 H 1.09001 * 109.46698 * 44.21219 * 9 8 7 37 37 H 1.09003 * 109.47160 * 304.99617 * 14 10 9 38 38 H 1.08991 * 109.47174 * 65.00532 * 14 10 9 39 39 H 0.97000 * 119.99916 * 179.97438 * 18 17 15 40 40 H 1.08995 * 108.71219 * 197.18833 * 23 8 7 41 41 H 1.08998 * 108.57826 * 79.12016 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8805 1.0321 0.0000 4 6 2.0149 -0.6769 1.2541 5 6 3.3414 -0.0189 1.6959 6 6 4.4650 -0.4744 0.8847 7 6 4.3051 -0.1172 -0.6045 8 7 3.4457 -1.1008 -1.2180 9 6 3.9466 -1.4832 -2.5450 10 6 3.2657 -2.7779 -2.9935 11 1 2.1838 -2.6474 -2.9671 12 6 3.6501 -3.8734 -2.0885 13 7 3.9467 -4.7188 -1.3902 14 6 3.7039 -3.1169 -4.4197 15 6 2.9413 -4.3221 -4.9064 16 1 2.2163 -4.7984 -4.2630 17 6 3.1684 -4.8162 -6.1734 18 7 4.0509 -4.2359 -6.9570 19 14 2.2237 -6.3106 -6.7764 20 1 0.9719 -5.8692 -7.4423 21 1 3.0588 -7.0670 -7.7437 22 1 1.8892 -7.1835 -5.6226 23 6 2.0257 -0.6894 -1.2838 24 1 -0.3633 0.5392 0.8748 25 1 -0.3634 0.4880 -0.9044 26 1 -0.3633 -1.0272 0.0295 27 1 2.1806 -1.7360 1.0568 28 1 1.2711 -0.5644 2.0429 29 1 3.5319 -0.2687 2.7396 30 1 3.2504 1.0632 1.6015 31 1 4.5519 -1.5568 0.9798 32 1 5.3795 -0.0155 1.2607 33 1 3.8570 0.8720 -0.6990 34 1 5.2802 -0.1267 -1.0914 35 1 3.7254 -0.6900 -3.2592 36 1 5.0245 -1.6377 -2.4957 37 1 3.4996 -2.2692 -5.0738 38 1 4.7719 -3.3344 -4.4296 39 1 4.2110 -4.5837 -7.8483 40 1 1.4137 -1.5729 -1.4649 41 1 1.9018 -0.0016 -2.1202 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187940516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:42 Heat of formation + Delta-G solvation = 1.524929 kcal Electronic energy + Delta-G solvation = -18779.438947 eV Core-core repulsion = 16079.202247 eV Total energy + Delta-G solvation = -2700.236700 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.43911 -36.66266 -34.71717 -33.69694 -33.30360 -31.42098 -27.86029 -26.95896 -25.54244 -24.20238 -22.15886 -21.67424 -20.40668 -19.34868 -16.81161 -16.50435 -15.71185 -15.40871 -15.05225 -14.57745 -14.16845 -13.81201 -13.51583 -12.98247 -12.83606 -12.79417 -12.45440 -12.40363 -12.19365 -11.87310 -11.56432 -11.46434 -11.17887 -11.06457 -10.88414 -10.67536 -10.58723 -10.53254 -10.46065 -10.36379 -10.30013 -10.08781 -9.48394 -9.19194 -8.44079 -7.97944 -6.08106 -4.10998 3.30078 3.37021 3.42020 3.79308 3.88683 4.02173 4.42716 4.63951 4.82616 4.88108 4.95924 5.10296 5.14397 5.28749 5.30165 5.46855 5.50855 5.60000 5.67467 5.69066 5.76159 5.81989 5.86090 5.96775 6.01882 6.06258 6.08379 6.16104 6.25823 6.30930 6.44024 6.44912 6.51667 6.55458 7.29424 7.42539 7.46748 7.55880 7.87402 8.25470 8.64627 8.93850 9.54375 11.02842 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.029992 B = 0.005032 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.355643 B = 5563.302779 C = 5781.876158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.062 0.938 4 C -0.109 4.109 5 C -0.112 4.112 6 C -0.116 4.116 7 C 0.066 3.934 8 N -0.552 5.552 9 C 0.067 3.933 10 C 0.010 3.990 11 H 0.098 0.902 12 C 0.259 3.741 13 N -0.482 5.482 14 C 0.031 3.969 15 C -0.525 4.525 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.065 3.935 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.262 0.738 40 H 0.075 0.925 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.451 12.699 12.618 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.081 0.919 4 C -0.146 4.146 5 C -0.149 4.149 6 C -0.155 4.155 7 C -0.063 4.063 8 N -0.276 5.276 9 C -0.061 4.061 10 C -0.012 4.012 11 H 0.116 0.884 12 C -0.058 4.058 13 N -0.159 5.159 14 C -0.008 4.008 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.062 4.062 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.901 11.029 13.786 17.892 hybrid contribution -0.630 0.161 -1.286 1.441 sum -3.531 11.190 12.500 17.145 Atomic orbital electron populations 1.21893 0.95002 1.02093 1.01465 1.20950 0.95545 0.99389 0.94948 0.91931 1.21396 0.96100 1.01205 0.95931 1.20532 0.95585 0.99675 0.99126 1.20500 0.97536 1.02615 0.94802 1.21760 0.96436 0.93214 0.94897 1.60686 1.01886 1.42674 1.22385 1.22315 0.99727 0.95921 0.88133 1.19230 1.01111 0.86499 0.94328 0.88412 1.28837 0.92180 0.93219 0.91587 1.80968 1.10211 1.11825 1.12904 1.19173 0.97593 0.97698 0.86312 1.21144 1.22784 1.12914 0.99435 0.92542 1.24949 0.95168 0.97040 0.96799 1.69942 1.33602 1.40766 1.08794 0.86600 0.79831 0.82994 0.78722 1.20497 1.21154 1.19841 1.22509 0.88677 0.99192 0.95851 0.92758 0.92737 0.92357 0.90747 0.92527 0.92718 0.92939 0.91094 0.92769 0.94159 0.91521 0.92983 0.90326 0.94551 0.95617 0.92833 0.90620 0.94657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.79 37.16 0.33 -1.04 16 2 C -0.09 -0.93 2.18 -91.37 -0.20 -1.13 16 3 H 0.06 0.63 6.65 -51.93 -0.35 0.29 16 4 C -0.11 -1.17 5.13 -27.16 -0.14 -1.31 16 5 C -0.11 -1.13 5.34 -29.30 -0.16 -1.28 16 6 C -0.12 -1.30 5.37 -29.59 -0.16 -1.46 16 7 C 0.07 0.77 5.40 -4.70 -0.03 0.74 16 8 N -0.55 -7.49 3.66 -234.59 -0.86 -8.35 16 9 C 0.07 1.02 4.24 -3.82 -0.02 1.00 16 10 C 0.01 0.19 2.17 -93.40 -0.20 -0.01 16 11 H 0.10 1.74 6.69 -51.93 -0.35 1.40 16 12 C 0.26 5.49 13.66 -20.76 -0.28 5.21 16 13 N -0.48 -11.09 18.54 42.15 0.78 -10.31 16 14 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 15 C -0.52 -14.07 8.60 -34.44 -0.30 -14.36 16 16 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 19 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.06 0.80 4.33 -2.75 -0.01 0.79 16 24 H 0.05 0.45 8.07 -51.93 -0.42 0.03 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 28 H 0.06 0.55 7.70 -51.93 -0.40 0.15 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.49 7.59 -51.93 -0.39 0.09 16 31 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.44 6.79 -51.93 -0.35 0.09 16 34 H 0.07 0.76 7.30 -51.93 -0.38 0.38 16 35 H 0.05 0.73 7.92 -51.93 -0.41 0.32 16 36 H 0.08 1.20 7.61 -51.93 -0.40 0.80 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.08 1.01 6.81 -51.93 -0.35 0.66 16 41 H 0.04 0.42 7.87 -51.93 -0.41 0.01 16 LS Contribution 323.07 15.07 4.87 4.87 Total: -1.00 -29.41 323.07 -7.98 -37.39 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -7.10 Total: -4.45 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.38 Total: -10.63 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.66 Total: -43.57 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.41 -7.98 -37.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187940516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.912 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds