Wall clock time and date at job start Sun Mar 29 2020 22:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 108.75536 * 2 1 4 4 C 1.50532 * 108.78914 * 118.35656 * 2 1 3 5 5 C 1.54527 * 108.85806 * 212.64384 * 4 2 1 6 6 C 1.45874 * 111.67473 * 282.75410 * 5 4 2 7 7 C 1.53979 * 112.66381 * 61.49791 * 6 5 4 8 8 N 1.44304 * 108.35520 * 278.59001 * 7 6 5 9 9 C 1.46903 * 111.00071 * 221.36866 * 8 7 6 10 10 C 1.53006 * 109.46917 * 164.20614 * 9 8 7 11 11 H 1.09002 * 109.46887 * 55.57417 * 10 9 8 12 12 C 1.47201 * 109.47200 * 295.57277 * 10 9 8 13 13 N 5.48091 * 116.16254 * 196.41555 * 2 1 3 14 14 C 1.53002 * 109.46584 * 175.57226 * 10 9 8 15 15 C 1.50704 * 109.46755 * 185.00147 * 14 10 9 16 16 H 1.07996 * 120.00108 * 0.02562 * 15 14 10 17 17 C 1.37875 * 119.99985 * 179.97438 * 15 14 10 18 18 N 1.31519 * 119.99900 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00173 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46909 * 90.00413 * 19 17 15 21 21 H 1.48498 * 109.47249 * 210.00692 * 19 17 15 22 22 H 1.48498 * 109.47098 * 330.00852 * 19 17 15 23 23 C 1.47987 * 113.63299 * 95.34260 * 8 7 6 24 24 H 1.08999 * 109.46981 * 301.64784 * 1 2 3 25 25 H 1.09000 * 109.47314 * 61.64607 * 1 2 3 26 26 H 1.08997 * 109.47266 * 181.64464 * 1 2 3 27 27 H 1.09001 * 109.57507 * 92.83744 * 4 2 1 28 28 H 1.08994 * 109.67916 * 332.51508 * 4 2 1 29 29 H 1.08995 * 109.03925 * 162.18475 * 5 4 2 30 30 H 1.09005 * 109.03799 * 43.31532 * 5 4 2 31 31 H 1.09000 * 108.84113 * 300.67449 * 6 5 4 32 32 H 1.09002 * 108.83924 * 182.31929 * 6 5 4 33 33 H 1.09004 * 109.69725 * 38.31361 * 7 6 5 34 34 H 1.08998 * 109.69703 * 158.86259 * 7 6 5 35 35 H 1.08997 * 109.47041 * 284.20720 * 9 8 7 36 36 H 1.09001 * 109.46698 * 44.21219 * 9 8 7 37 37 H 1.09003 * 109.47160 * 304.99617 * 14 10 9 38 38 H 1.08991 * 109.47174 * 65.00532 * 14 10 9 39 39 H 0.97000 * 119.99916 * 179.97438 * 18 17 15 40 40 H 1.08995 * 108.71219 * 197.18833 * 23 8 7 41 41 H 1.08998 * 108.57826 * 79.12016 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8805 1.0321 0.0000 4 6 2.0149 -0.6769 1.2541 5 6 3.3414 -0.0189 1.6959 6 6 4.4650 -0.4744 0.8847 7 6 4.3051 -0.1172 -0.6045 8 7 3.4457 -1.1008 -1.2180 9 6 3.9466 -1.4832 -2.5450 10 6 3.2657 -2.7779 -2.9935 11 1 2.1838 -2.6474 -2.9671 12 6 3.6501 -3.8734 -2.0885 13 7 3.9467 -4.7188 -1.3902 14 6 3.7039 -3.1169 -4.4197 15 6 2.9413 -4.3221 -4.9064 16 1 2.2163 -4.7984 -4.2630 17 6 3.1684 -4.8162 -6.1734 18 7 4.0509 -4.2359 -6.9570 19 14 2.2237 -6.3106 -6.7764 20 1 0.9719 -5.8692 -7.4423 21 1 3.0588 -7.0670 -7.7437 22 1 1.8892 -7.1835 -5.6226 23 6 2.0257 -0.6894 -1.2838 24 1 -0.3633 0.5392 0.8748 25 1 -0.3634 0.4880 -0.9044 26 1 -0.3633 -1.0272 0.0295 27 1 2.1806 -1.7360 1.0568 28 1 1.2711 -0.5644 2.0429 29 1 3.5319 -0.2687 2.7396 30 1 3.2504 1.0632 1.6015 31 1 4.5519 -1.5568 0.9798 32 1 5.3795 -0.0155 1.2607 33 1 3.8570 0.8720 -0.6990 34 1 5.2802 -0.1267 -1.0914 35 1 3.7254 -0.6900 -3.2592 36 1 5.0245 -1.6377 -2.4957 37 1 3.4996 -2.2692 -5.0738 38 1 4.7719 -3.3344 -4.4296 39 1 4.2110 -4.5837 -7.8483 40 1 1.4137 -1.5729 -1.4649 41 1 1.9018 -0.0016 -2.1202 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187940516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:42 Heat of formation + Delta-G solvation = -14.114743 kcal Electronic energy + Delta-G solvation = -18780.117134 eV Core-core repulsion = 16079.202247 eV Total energy + Delta-G solvation = -2700.914887 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.43835 -38.16706 -36.08932 -35.24970 -34.47155 -33.11365 -29.11618 -28.18309 -26.69915 -25.42814 -23.66880 -23.14542 -21.28504 -20.26973 -18.54682 -18.20533 -16.93231 -16.53141 -16.41830 -16.00951 -15.26075 -15.11347 -14.62808 -14.47668 -14.16296 -13.86618 -13.74035 -13.65005 -13.43609 -13.33480 -13.04846 -12.86802 -12.72295 -12.50063 -12.44471 -12.25391 -11.96109 -11.73635 -11.49038 -11.36605 -11.34040 -11.21221 -11.14757 -10.96729 -10.54772 -9.01551 -8.19482 -6.27735 1.39841 1.41905 1.51286 2.08063 2.15780 2.41509 2.95287 3.15935 3.37414 3.78449 3.99039 3.99896 4.13939 4.27530 4.31406 4.39361 4.46479 4.67180 4.69925 4.73433 4.81437 4.84058 4.92377 4.93834 4.98346 5.00802 5.06810 5.22693 5.28688 5.34747 5.43451 5.46188 5.48212 5.57844 5.62081 5.65073 5.79068 6.15029 6.26493 6.46418 6.83186 6.94551 7.40823 8.91452 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.029992 B = 0.005032 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.355643 B = 5563.302779 C = 5781.876158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.107 4.107 5 C -0.110 4.110 6 C -0.112 4.112 7 C 0.065 3.935 8 N -0.564 5.564 9 C 0.077 3.923 10 C 0.022 3.978 11 H 0.111 0.889 12 C 0.268 3.732 13 N -0.515 5.515 14 C 0.038 3.962 15 C -0.539 4.539 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.948 3.052 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.277 1.277 23 C 0.062 3.938 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.034 0.966 38 H 0.001 0.999 39 H 0.264 0.736 40 H 0.060 0.940 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 14.095 13.231 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.145 4.145 5 C -0.148 4.148 6 C -0.150 4.150 7 C -0.063 4.063 8 N -0.288 5.288 9 C -0.051 4.051 10 C 0.000 4.000 11 H 0.129 0.871 12 C -0.048 4.048 13 N -0.193 5.193 14 C 0.000 4.000 15 C -0.577 4.577 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.202 1.202 23 C -0.065 4.065 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.779 12.435 14.411 19.405 hybrid contribution -0.349 -0.273 -1.452 1.518 sum -4.128 12.161 12.959 18.245 Atomic orbital electron populations 1.21875 0.94107 1.01826 1.02392 1.20919 0.96238 0.99506 0.93656 0.90755 1.21370 0.96987 0.99493 0.96604 1.20523 0.94606 1.00462 0.99159 1.20469 0.98852 1.00847 0.94855 1.21826 0.96268 0.93358 0.94888 1.60609 1.02854 1.44079 1.21280 1.22141 0.99128 0.94268 0.89592 1.19178 1.02102 0.87444 0.91299 0.87143 1.29322 0.91246 0.93004 0.91221 1.80961 1.11426 1.12842 1.14077 1.18990 0.95659 0.96474 0.88922 1.21531 1.22754 1.13913 0.99496 0.93021 1.25699 0.96086 0.99640 0.97211 1.70033 1.34905 1.42185 1.09176 0.85694 0.79080 0.79779 0.78025 1.19077 1.20908 1.20206 1.22566 0.87665 0.98877 0.97347 0.91375 0.92255 0.93265 0.93638 0.91344 0.92157 0.91313 0.93958 0.91288 0.92580 0.91330 0.91402 0.90579 0.94734 0.98040 0.92693 0.92152 0.93917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.79 71.98 0.63 -1.74 16 2 C -0.08 -1.58 2.18 -11.28 -0.02 -1.60 16 3 H 0.07 1.25 6.65 -2.39 -0.02 1.23 16 4 C -0.11 -2.13 5.13 30.31 0.16 -1.98 16 5 C -0.11 -1.98 5.34 28.93 0.15 -1.82 16 6 C -0.11 -2.33 5.37 28.74 0.15 -2.18 16 7 C 0.06 1.38 5.40 87.12 0.47 1.86 16 8 N -0.56 -14.61 3.66 -896.12 -3.28 -17.89 16 9 C 0.08 2.26 4.24 86.30 0.37 2.63 16 10 C 0.02 0.81 2.17 -12.60 -0.03 0.78 16 11 H 0.11 3.86 6.69 -2.39 -0.02 3.85 16 12 C 0.27 11.45 13.66 89.44 1.22 12.67 16 13 N -0.52 -23.97 18.54 20.01 0.37 -23.60 16 14 C 0.04 1.80 4.42 29.85 0.13 1.93 16 15 C -0.54 -28.96 8.60 25.60 0.22 -28.74 16 16 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 17 C 0.01 0.70 5.46 84.65 0.46 1.16 16 18 N -0.92 -53.27 13.29 21.45 0.28 -52.98 16 19 Si 0.95 43.78 29.54 68.60 2.03 45.81 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 C 0.06 1.44 4.33 86.40 0.37 1.81 16 24 H 0.07 0.94 8.07 -2.39 -0.02 0.92 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.04 1.17 7.79 -2.39 -0.02 1.16 16 28 H 0.07 1.19 7.70 -2.39 -0.02 1.17 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.04 7.59 -2.38 -0.02 1.03 16 31 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.04 6.79 -2.38 -0.02 1.03 16 34 H 0.07 1.44 7.30 -2.39 -0.02 1.42 16 35 H 0.07 1.79 7.92 -2.39 -0.02 1.77 16 36 H 0.08 2.26 7.61 -2.39 -0.02 2.25 16 37 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 40 H 0.06 1.56 6.81 -2.39 -0.02 1.55 16 41 H 0.04 0.92 7.87 -2.39 -0.02 0.91 16 Total: -1.00 -62.36 323.07 4.67 -57.69 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 0.98 Total: 6.20 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 4.29 Total: -15.22 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -2.63 Total: -94.47 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -62.36 4.67 -57.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187940516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.579 kcal (2) G-P(sol) polarization free energy of solvation -62.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds