Wall clock time and date at job start Sun Mar 29 2020 22:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47349 * 2 1 4 4 C 1.52999 * 109.46826 * 240.01038 * 2 1 3 5 5 C 1.52995 * 109.47339 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.46911 * 59.99760 * 5 4 2 7 7 C 1.53000 * 109.47166 * 299.99715 * 6 5 4 8 8 C 1.52999 * 109.47581 * 120.00586 * 2 1 3 9 9 H 1.09000 * 109.46735 * 59.99853 * 8 2 1 10 10 N 1.46900 * 109.47086 * 299.99652 * 8 2 1 11 11 C 1.46900 * 110.99761 * 154.99821 * 10 8 2 12 12 C 1.52994 * 109.47023 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.47481 * 55.00359 * 12 11 10 14 14 C 1.47197 * 109.47219 * 294.99996 * 12 11 10 15 15 N 5.85793 * 101.52247 * 73.32757 * 2 1 3 16 16 C 1.52998 * 109.47095 * 175.00276 * 12 11 10 17 17 C 1.50706 * 109.47348 * 184.99906 * 16 12 11 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 12 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 12 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 300.00068 * 21 19 17 24 24 H 1.48504 * 109.47102 * 60.00417 * 21 19 17 25 25 H 1.09007 * 109.46649 * 299.99212 * 1 2 3 26 26 H 1.08992 * 109.47732 * 59.99200 * 1 2 3 27 27 H 1.09000 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47667 * 59.99444 * 4 2 1 29 29 H 1.09008 * 109.46804 * 299.99544 * 4 2 1 30 30 H 1.09000 * 109.47255 * 300.00033 * 5 4 2 31 31 H 1.09006 * 109.47695 * 179.97438 * 5 4 2 32 32 H 1.09009 * 109.46921 * 180.02562 * 6 5 4 33 33 H 1.08995 * 109.47304 * 60.00359 * 6 5 4 34 34 H 1.09003 * 109.47364 * 300.00789 * 7 6 5 35 35 H 1.08992 * 109.47012 * 180.02562 * 7 6 5 36 36 H 1.00894 * 110.99679 * 31.04932 * 10 8 2 37 37 H 1.09004 * 109.47027 * 60.00361 * 11 10 8 38 38 H 1.09002 * 109.47026 * 300.00576 * 11 10 8 39 39 H 1.09001 * 109.47671 * 65.00115 * 16 12 11 40 40 H 1.09006 * 109.47297 * 304.99834 * 16 12 11 41 41 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2494 5 6 3.5699 -0.7205 -1.2498 6 6 4.0804 -1.4417 -0.0007 7 6 3.5706 -0.7205 1.2487 8 6 2.0401 -0.7214 1.2491 9 1 1.6768 -1.7490 1.2490 10 7 1.5506 -0.0289 2.4487 11 6 1.4879 -0.9442 3.5960 12 6 0.9742 -0.1889 4.8233 13 1 0.0184 0.2793 4.5882 14 6 1.9476 0.8474 5.2046 15 7 2.7001 1.6468 5.4986 16 6 0.7905 -1.1679 5.9847 17 6 0.1696 -0.4488 7.1546 18 1 -0.0696 0.6016 7.0776 19 6 -0.0930 -1.1318 8.3230 20 7 0.1987 -2.4107 8.4170 21 14 -0.8619 -0.2402 9.7733 22 1 -1.0415 -1.1908 10.9000 23 1 0.0267 0.8708 10.1991 24 1 -2.1829 0.3079 9.3735 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 1.6765 -0.2072 -2.1393 29 1 1.6766 -1.7488 -1.2495 30 1 3.9329 0.3072 -1.2499 31 1 3.9332 -1.2346 -2.1397 32 1 5.1705 -1.4409 -0.0007 33 1 3.7175 -2.4694 -0.0006 34 1 3.9335 0.3073 1.2486 35 1 3.9347 -1.2340 2.1385 36 1 0.6529 0.3990 2.2780 37 1 2.4833 -1.3379 3.8015 38 1 0.8115 -1.7678 3.3672 39 1 1.7603 -1.5695 6.2783 40 1 0.1388 -1.9839 5.6723 41 1 0.5984 -2.8736 7.6640 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194073449.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:06 Heat of formation + Delta-G solvation = -35.561408 kcal Electronic energy + Delta-G solvation = -18373.617740 eV Core-core repulsion = 15671.772856 eV Total energy + Delta-G solvation = -2701.844884 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.30990 -38.48272 -36.19697 -35.50632 -33.67386 -32.93199 -30.12632 -27.76609 -26.83234 -24.68169 -23.81809 -22.50171 -22.01704 -20.61140 -19.11639 -18.46145 -16.79323 -16.15036 -15.80898 -15.68696 -15.43874 -15.32555 -15.08164 -14.96335 -14.16919 -14.05045 -13.78192 -13.54355 -13.41877 -13.32359 -13.15202 -12.82495 -12.78264 -12.43067 -12.39540 -12.09192 -12.03368 -11.93139 -11.77497 -11.70739 -11.37465 -11.06118 -10.89850 -10.64662 -10.53265 -9.35445 -8.64429 -6.35527 1.53798 1.60276 1.79343 1.96720 2.03666 2.56263 3.07948 3.18215 3.26552 3.73438 3.80851 4.00580 4.09352 4.22132 4.25008 4.35468 4.47265 4.53608 4.59004 4.61177 4.63752 4.67922 4.79229 4.85146 4.93626 5.01709 5.09709 5.18237 5.18954 5.21761 5.30316 5.34972 5.37875 5.40483 5.43315 5.57973 5.92823 6.11443 6.20115 6.51382 6.61560 6.81343 7.42468 8.77594 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.036323 B = 0.004197 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.667741 B = 6670.158148 C = 6754.953050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 H 0.067 0.933 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.109 4.109 8 C 0.096 3.904 9 H 0.047 0.953 10 N -0.700 5.700 11 C 0.080 3.920 12 C 0.027 3.973 13 H 0.118 0.882 14 C 0.264 3.736 15 N -0.510 5.510 16 C 0.022 3.978 17 C -0.616 4.616 18 H 0.046 0.954 19 C -0.030 4.030 20 N -0.935 5.935 21 Si 1.106 2.894 22 H -0.283 1.283 23 H -0.283 1.283 24 H -0.263 1.263 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.349 0.651 37 H 0.065 0.935 38 H 0.064 0.936 39 H -0.005 1.005 40 H 0.032 0.968 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.794 0.721 -21.663 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 H 0.086 0.914 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.013 4.013 9 H 0.065 0.935 10 N -0.334 5.334 11 C -0.051 4.051 12 C 0.005 3.995 13 H 0.136 0.864 14 C -0.052 4.052 15 N -0.188 5.188 16 C -0.017 4.017 17 C -0.654 4.654 18 H 0.065 0.935 19 C -0.228 4.228 20 N -0.573 5.573 21 Si 0.928 3.072 22 H -0.208 1.208 23 H -0.210 1.210 24 H -0.188 1.188 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.171 0.829 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.013 0.987 40 H 0.050 0.950 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.002 1.982 -19.515 19.717 hybrid contribution -0.209 -0.671 -1.381 1.550 sum 1.792 1.311 -20.896 21.014 Atomic orbital electron populations 1.21898 0.94527 1.02185 1.02332 1.21245 0.95956 0.99701 0.93911 0.91408 1.21551 0.95380 1.00765 0.96886 1.21540 0.95764 1.00627 0.97621 1.21522 1.00412 0.99374 0.94089 1.21533 0.95121 1.00367 0.97695 1.21557 0.94967 0.95984 0.88812 0.93498 1.60503 1.34478 1.33736 1.04674 1.21890 1.01119 0.93714 0.88364 1.19030 0.93996 0.90565 0.95914 0.86423 1.29321 0.92898 0.92913 0.90110 1.80998 1.12706 1.13045 1.12017 1.19149 0.95854 0.94463 0.92252 1.22376 1.44575 0.97668 1.00762 0.93541 1.27075 0.96044 0.96243 1.03474 1.70914 1.41540 1.10334 1.34474 0.83059 0.76683 0.74277 0.73147 1.20786 1.20956 1.18805 0.92644 0.91275 0.92403 0.90715 0.91624 0.92366 0.90785 0.91737 0.91714 0.92912 0.93787 0.82916 0.91620 0.91765 0.98658 0.95016 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.96 71.98 0.64 -1.64 16 2 C -0.09 -1.53 2.38 -10.79 -0.03 -1.55 16 3 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 4 C -0.11 -1.51 5.20 30.59 0.16 -1.35 16 5 C -0.12 -1.72 5.92 30.59 0.18 -1.53 16 6 C -0.12 -2.01 5.92 30.60 0.18 -1.82 16 7 C -0.11 -2.45 5.43 30.61 0.17 -2.29 16 8 C 0.10 2.03 1.97 44.93 0.09 2.12 16 9 H 0.05 0.99 7.80 -2.39 -0.02 0.97 16 10 N -0.70 -17.69 6.01 -491.49 -2.95 -20.64 16 11 C 0.08 2.31 4.85 86.30 0.42 2.72 16 12 C 0.03 0.98 2.35 -12.60 -0.03 0.95 16 13 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 14 C 0.26 11.23 13.67 89.43 1.22 12.45 16 15 N -0.51 -23.75 18.54 20.01 0.37 -23.38 16 16 C 0.02 1.00 3.74 29.85 0.11 1.11 16 17 C -0.62 -33.23 8.60 25.60 0.22 -33.01 16 18 H 0.05 2.50 7.59 -2.91 -0.02 2.48 16 19 C -0.03 -1.66 5.46 84.65 0.46 -1.20 16 20 N -0.94 -55.66 13.65 21.45 0.29 -55.37 16 21 Si 1.11 49.97 29.90 68.60 2.05 52.02 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 25 H 0.05 0.88 6.21 -2.38 -0.01 0.86 16 26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.04 1.12 7.46 -2.39 -0.02 1.10 16 36 H 0.35 7.90 6.16 -89.70 -0.55 7.35 16 37 H 0.07 2.05 7.44 -2.39 -0.02 2.03 16 38 H 0.06 1.66 8.06 -2.39 -0.02 1.64 16 39 H 0.00 -0.25 8.01 -2.39 -0.02 -0.27 16 40 H 0.03 1.45 8.01 -2.38 -0.02 1.43 16 41 H 0.26 15.37 7.22 -92.71 -0.67 14.70 16 Total: -1.00 -64.42 327.40 4.10 -60.33 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.54 Total: 12.09 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 3.80 Total: -25.04 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -2.29 Total: -99.39 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.05 Total: 52.02 kcal Total: -64.42 4.10 -60.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194073449.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.764 kcal (2) G-P(sol) polarization free energy of solvation -64.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds