Wall clock time and date at job start Sun Mar 29 2020 22:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47280 * 2 1 4 4 H 1.09005 * 109.90385 * 306.33277 * 3 2 1 5 5 C 1.53988 * 109.91656 * 185.22767 * 3 2 1 6 6 C 1.54599 * 105.13805 * 239.22352 * 5 3 2 7 7 H 1.09004 * 110.72282 * 96.58094 * 6 5 3 8 8 C 1.52996 * 110.72566 * 219.68399 * 6 5 3 9 9 C 1.54936 * 103.08050 * 338.13469 * 6 5 3 10 10 N 1.47901 * 110.07773 * 67.53878 * 3 2 1 11 11 C 1.46906 * 110.99815 * 265.28805 * 10 3 2 12 12 C 1.52997 * 109.46838 * 183.09831 * 11 10 3 13 13 H 1.08998 * 109.47688 * 305.00283 * 12 11 10 14 14 C 1.47204 * 109.47125 * 65.00420 * 12 11 10 15 15 N 6.12494 * 94.63452 * 28.32251 * 2 1 3 16 16 C 1.53007 * 109.47234 * 184.99800 * 12 11 10 17 17 C 1.50691 * 109.47139 * 175.00075 * 16 12 11 18 18 H 1.07993 * 120.00434 * 0.02562 * 17 16 12 19 19 C 1.37878 * 119.99954 * 180.02562 * 17 16 12 20 20 N 1.31517 * 119.99854 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00408 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46796 * 90.00295 * 21 19 17 23 23 H 1.48495 * 109.47474 * 210.00048 * 21 19 17 24 24 H 1.48502 * 109.47008 * 330.00576 * 21 19 17 25 25 H 1.08999 * 109.47242 * 172.78263 * 1 2 3 26 26 H 1.09000 * 109.46555 * 292.77653 * 1 2 3 27 27 H 1.09001 * 109.47293 * 52.77545 * 1 2 3 28 28 H 1.09004 * 109.46500 * 240.00725 * 2 1 3 29 29 H 1.08997 * 109.47270 * 120.00808 * 2 1 3 30 30 H 1.08999 * 110.31257 * 120.31051 * 5 3 2 31 31 H 1.08999 * 110.31106 * 358.13812 * 5 3 2 32 32 H 1.08997 * 109.47018 * 57.55005 * 8 6 5 33 33 H 1.08997 * 109.47079 * 177.55017 * 8 6 5 34 34 H 1.09000 * 109.47118 * 297.54790 * 8 6 5 35 35 H 1.09010 * 110.66221 * 155.76002 * 9 6 5 36 36 H 1.08993 * 110.66523 * 278.88481 * 9 6 5 37 37 H 1.08999 * 109.46811 * 303.09692 * 11 10 3 38 38 H 1.09000 * 109.46841 * 63.09990 * 11 10 3 39 39 H 1.09004 * 109.46882 * 295.00364 * 16 12 11 40 40 H 1.09006 * 109.46446 * 54.99959 * 16 12 11 41 41 H 0.97005 * 119.99991 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5913 1.9948 -0.8257 5 6 3.5742 1.4564 -0.1319 6 6 4.0817 2.1844 1.1340 7 1 4.3686 1.4667 1.9027 8 6 5.2530 3.1082 0.7945 9 6 2.8479 3.0062 1.5843 10 7 1.7090 2.0981 1.2837 11 6 0.4494 2.8474 1.1827 12 6 0.1803 3.5728 2.5026 13 1 0.1939 2.8539 3.3218 14 6 1.2214 4.5895 2.7248 15 7 2.0249 5.3741 2.8964 16 6 -1.1899 4.2510 2.4418 17 6 -1.5082 4.8613 3.7823 18 1 -0.8037 4.7746 4.5961 19 6 -2.6991 5.5304 3.9698 20 7 -3.5574 5.6356 2.9788 21 14 -3.0942 6.2863 5.6317 22 1 -2.5899 7.6825 5.6728 23 1 -4.5646 6.2849 5.8392 24 1 -2.4421 5.4927 6.7041 25 1 -0.3634 -1.0195 -0.1291 26 1 -0.3632 0.3979 0.9476 27 1 -0.3634 0.6217 -0.8183 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8721 2.0023 -1.0271 31 1 3.9606 0.4377 -0.1630 32 1 4.9420 3.8248 0.0344 33 1 5.5660 3.6428 1.6914 34 1 6.0856 2.5152 0.4159 35 1 2.8992 3.2238 2.6513 36 1 2.7670 3.9267 1.0064 37 1 0.5242 3.5766 0.3760 38 1 -0.3681 2.1573 0.9742 39 1 -1.1754 5.0318 1.6813 40 1 -1.9501 3.5118 2.1892 41 1 -4.3951 6.1066 3.1106 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195532099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:22 Heat of formation + Delta-G solvation = 9.682470 kcal Electronic energy + Delta-G solvation = -18860.333770 eV Core-core repulsion = 16160.450807 eV Total energy + Delta-G solvation = -2699.882962 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.70546 -36.53794 -34.36365 -33.59788 -32.76102 -30.92030 -28.80472 -26.71944 -25.57394 -23.72035 -22.21576 -21.49872 -20.33687 -19.80448 -16.84380 -16.46681 -15.75916 -15.36967 -15.06155 -14.51275 -13.65908 -13.54825 -13.28041 -13.22174 -13.11014 -12.63200 -12.48087 -12.36588 -12.11065 -12.00565 -11.79870 -11.46940 -11.27564 -11.13587 -11.02180 -10.71577 -10.60743 -10.52143 -10.43852 -10.35112 -10.21877 -10.20658 -9.50982 -9.20534 -8.44878 -8.24418 -6.08926 -4.11976 3.30266 3.36786 3.40302 3.58850 3.64449 4.06960 4.41781 4.57908 4.66909 4.83668 4.91399 5.04379 5.28613 5.29112 5.34810 5.44182 5.52175 5.56871 5.64146 5.68814 5.71989 5.76636 5.83090 5.90756 6.02947 6.04977 6.06454 6.15364 6.20714 6.25004 6.35233 6.42549 6.50582 6.58036 7.06232 7.24914 7.44232 7.53781 7.86175 8.24002 8.42217 8.92496 9.53421 11.01978 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.026356 B = 0.005603 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.103470 B = 4995.744472 C = 5812.263956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.104 4.104 3 C 0.064 3.936 4 H 0.051 0.949 5 C -0.122 4.122 6 C -0.096 4.096 7 H 0.080 0.920 8 C -0.142 4.142 9 C 0.033 3.967 10 N -0.511 5.511 11 C 0.050 3.950 12 C 0.006 3.994 13 H 0.109 0.891 14 C 0.248 3.752 15 N -0.481 5.481 16 C 0.033 3.967 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.100 0.900 39 H 0.023 0.977 40 H 0.039 0.961 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.961 -11.235 -7.464 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.142 4.142 3 C -0.044 4.044 4 H 0.069 0.931 5 C -0.160 4.160 6 C -0.115 4.115 7 H 0.099 0.901 8 C -0.200 4.200 9 C -0.094 4.094 10 N -0.235 5.235 11 C -0.079 4.079 12 C -0.016 4.016 13 H 0.127 0.873 14 C -0.068 4.068 15 N -0.158 5.158 16 C -0.006 4.006 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.118 0.882 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.903 -10.364 -6.841 17.201 hybrid contribution -0.643 0.937 0.208 1.155 sum 11.260 -9.428 -6.633 16.114 Atomic orbital electron populations 1.21907 0.95763 1.01136 1.02624 1.21498 0.96198 0.95036 1.01498 1.22440 0.94731 0.95970 0.91288 0.93052 1.22544 0.94742 1.00909 0.97835 1.22071 0.94777 0.97295 0.97402 0.90132 1.21760 0.97504 0.99134 1.01585 1.23636 0.89786 0.94351 1.01663 1.64775 1.02088 1.27478 1.29200 1.22593 0.92661 0.96377 0.96291 1.19338 0.92522 0.91843 0.97911 0.87277 1.29140 0.92174 0.93330 0.92161 1.81049 1.13445 1.11609 1.09704 1.19156 0.87263 0.95969 0.98178 1.21138 1.03196 1.35171 0.96865 0.92531 1.24949 0.96212 0.95976 0.96797 1.69942 1.09438 1.42369 1.31293 0.86596 0.77463 0.79742 0.84302 1.20702 1.21074 1.19715 0.93223 0.91171 0.93134 0.92396 0.91220 0.91720 0.91076 0.92827 0.92483 0.92688 0.89713 0.93556 0.94435 0.88199 0.95841 0.94237 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 8.75 37.16 0.33 -1.36 16 2 C -0.10 -1.09 5.39 -26.73 -0.14 -1.23 16 3 C 0.06 0.76 2.59 -66.65 -0.17 0.59 16 4 H 0.05 0.63 7.68 -51.93 -0.40 0.23 16 5 C -0.12 -1.29 6.15 -25.38 -0.16 -1.45 16 6 C -0.10 -1.14 3.65 -88.76 -0.32 -1.46 16 7 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 8 C -0.14 -1.54 9.14 37.16 0.34 -1.20 16 9 C 0.03 0.49 3.91 -1.79 -0.01 0.49 16 10 N -0.51 -7.21 4.87 -222.40 -1.08 -8.29 16 11 C 0.05 0.77 4.17 -3.82 -0.02 0.76 16 12 C 0.01 0.11 2.37 -93.40 -0.22 -0.11 16 13 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 14 C 0.25 5.10 9.96 -20.76 -0.21 4.89 16 15 N -0.48 -10.46 17.51 42.16 0.74 -9.72 16 16 C 0.03 0.77 4.42 -27.88 -0.12 0.65 16 17 C -0.53 -14.11 8.60 -34.44 -0.30 -14.40 16 18 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 21 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.84 6.27 -51.93 -0.33 0.52 16 27 H 0.05 0.54 8.13 -51.93 -0.42 0.11 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.65 7.85 -51.93 -0.41 0.24 16 31 H 0.07 0.66 7.69 -51.93 -0.40 0.26 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.40 6.17 -51.92 -0.32 1.08 16 36 H 0.05 0.76 6.98 -51.93 -0.36 0.40 16 37 H 0.04 0.60 7.99 -51.93 -0.41 0.19 16 38 H 0.10 1.45 5.35 -51.93 -0.28 1.17 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 322.51 15.07 4.86 4.86 Total: -1.00 -28.79 322.51 -7.96 -36.75 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -7.09 Total: -2.89 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.10 Total: -12.21 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.39 Total: -42.92 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.79 -7.96 -36.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195532099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.430 kcal (2) G-P(sol) polarization free energy of solvation -28.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds