Wall clock time and date at job start Sun Mar 29 2020 22:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34954 * 126.03771 * 2 1 4 4 C 1.35311 * 107.74429 * 179.97438 * 3 2 1 5 5 C 1.39869 * 107.92453 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.90122 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.46986 * 95.00351 * 6 5 4 8 8 C 1.46906 * 111.00119 * 294.30113 * 7 6 5 9 9 C 1.53239 * 109.33872 * 172.74751 * 8 7 6 10 10 N 1.47081 * 108.52020 * 53.83004 * 9 8 7 11 11 C 1.36933 * 120.87729 * 128.79370 * 10 9 8 12 12 H 1.08006 * 119.99929 * 206.66332 * 11 10 9 13 13 C 1.38814 * 120.00239 * 26.66090 * 11 10 9 14 14 N 1.31619 * 120.00163 * 17.01985 * 13 11 10 15 15 Si 1.86805 * 119.99891 * 197.02589 * 13 11 10 16 16 H 1.48503 * 109.47152 * 90.00159 * 15 13 11 17 17 H 1.48497 * 109.46889 * 209.99696 * 15 13 11 18 18 H 1.48494 * 109.47338 * 329.99437 * 15 13 11 19 19 C 1.47078 * 118.23940 * 308.81456 * 10 9 8 20 20 C 1.46905 * 110.99916 * 170.00187 * 7 6 5 21 21 N 1.30840 * 108.19889 * 0.26522 * 5 4 3 22 22 H 1.09000 * 109.46490 * 90.00112 * 1 2 3 23 23 H 1.08996 * 109.47095 * 209.99965 * 1 2 3 24 24 H 1.09005 * 109.47334 * 330.00779 * 1 2 3 25 25 H 1.07994 * 126.12471 * 359.96204 * 3 2 1 26 26 H 1.08004 * 126.04050 * 180.02562 * 4 3 2 27 27 H 1.09008 * 109.46989 * 335.00117 * 6 5 4 28 28 H 1.08999 * 109.47091 * 215.00801 * 6 5 4 29 29 H 1.08999 * 109.48914 * 292.70584 * 8 7 6 30 30 H 1.08995 * 109.48856 * 52.78771 * 8 7 6 31 31 H 1.08997 * 109.62563 * 294.11962 * 9 8 7 32 32 H 1.09001 * 109.78510 * 173.63435 * 9 8 7 33 33 H 0.97001 * 120.00342 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.62886 * 291.47211 * 19 10 9 35 35 H 1.08999 * 109.78759 * 170.99300 * 19 10 9 36 36 H 1.08999 * 109.48868 * 307.21591 * 20 7 6 37 37 H 1.08994 * 109.49202 * 67.26571 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 3.5347 -0.7321 0.0015 6 6 4.7497 -1.6236 0.0019 7 7 5.0733 -2.0097 1.3818 8 6 5.4872 -0.8424 2.1718 9 6 5.6399 -1.2520 3.6405 10 7 6.5497 -2.4055 3.7117 11 6 7.6228 -2.4027 4.5622 12 1 8.4950 -2.9971 4.3331 13 6 7.5898 -1.6359 5.7189 14 7 6.4413 -1.1845 6.1767 15 14 9.1755 -1.2444 6.6256 16 1 9.7468 0.0215 6.0997 17 1 8.8925 -1.0949 8.0756 18 1 10.1475 -2.3484 6.4222 19 6 6.2765 -3.5618 2.8448 20 6 6.0987 -3.0614 1.4074 21 7 2.2891 -1.1327 -0.0042 22 1 -0.3632 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8901 0.5137 25 1 1.9281 2.1193 -0.0006 26 1 4.4211 1.2963 0.0011 27 1 5.5935 -1.0879 -0.4330 28 1 4.5445 -2.5176 -0.5870 29 1 6.4404 -0.4693 1.7972 30 1 4.7321 -0.0608 2.0887 31 1 4.6668 -1.5275 4.0468 32 1 6.0546 -0.4226 4.2136 33 1 6.4182 -0.6490 6.9852 34 1 5.3645 -4.0594 3.1748 35 1 7.1114 -4.2611 2.8885 36 1 5.7870 -3.8888 0.7701 37 1 7.0432 -2.6574 1.0431 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211712476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:46 Heat of formation + Delta-G solvation = 118.071496 kcal Electronic energy + Delta-G solvation = -18494.987284 eV Core-core repulsion = 15696.264079 eV Total energy + Delta-G solvation = -2798.723205 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.02042 -37.92010 -34.66010 -33.05923 -31.19390 -30.06687 -29.73218 -28.25151 -26.13392 -24.28705 -22.49528 -22.22651 -20.98043 -19.43031 -18.95084 -16.86398 -16.68851 -15.52731 -14.94313 -14.65854 -14.36876 -14.04685 -13.69184 -13.52889 -13.26025 -13.05054 -12.95002 -12.51447 -12.49744 -11.83334 -11.56449 -11.31916 -11.00261 -10.70152 -10.49555 -10.31576 -10.20650 -9.96411 -9.67958 -9.55664 -9.09376 -8.44299 -8.41913 -7.69557 -6.58865 -5.71230 -3.12339 2.01656 2.61816 2.92856 3.41936 3.48396 3.49904 4.52494 4.54865 4.65140 4.87728 5.04292 5.07079 5.30576 5.42059 5.47259 5.55365 5.71487 5.82999 5.92490 6.01959 6.05436 6.21142 6.26368 6.38129 6.44462 6.64490 6.78884 6.81554 7.02929 7.11065 7.34402 7.69120 7.75742 7.80034 7.88657 7.94563 8.50558 9.28254 9.92045 10.51256 11.37495 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.033648 B = 0.005167 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.941329 B = 5418.188915 C = 5799.493937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.383 5.383 3 C 0.047 3.953 4 C -0.265 4.265 5 C 0.093 3.907 6 C 0.132 3.868 7 N -0.526 5.526 8 C 0.036 3.964 9 C 0.179 3.821 10 N -0.596 5.596 11 C -0.250 4.250 12 H 0.066 0.934 13 C 0.000 4.000 14 N -0.904 5.904 15 Si 0.902 3.098 16 H -0.288 1.288 17 H -0.292 1.292 18 H -0.279 1.279 19 C 0.149 3.851 20 C 0.046 3.954 21 N -0.279 5.279 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.170 0.830 26 H 0.144 0.856 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.024 0.976 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.087 0.913 33 H 0.253 0.747 34 H 0.025 0.975 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 4.404 -13.723 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.166 5.166 3 C -0.098 4.098 4 C -0.295 4.295 5 C -0.074 4.074 6 C 0.002 3.998 7 N -0.252 5.252 8 C -0.093 4.093 9 C 0.053 3.947 10 N -0.319 5.319 11 C -0.380 4.380 12 H 0.084 0.916 13 C -0.198 4.198 14 N -0.549 5.549 15 Si 0.732 3.268 16 H -0.215 1.215 17 H -0.218 1.218 18 H -0.205 1.205 19 C 0.022 3.978 20 C -0.084 4.084 21 N -0.102 5.102 22 H 0.088 0.912 23 H 0.106 0.894 24 H 0.102 0.898 25 H 0.187 0.813 26 H 0.162 0.838 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -10.134 3.302 -13.342 17.077 hybrid contribution 1.855 1.479 0.197 2.380 sum -8.279 4.781 -13.145 16.254 Atomic orbital electron populations 1.21775 0.74682 1.04392 1.02838 1.48518 1.06442 1.03998 1.57626 1.22436 0.91243 0.93293 1.02850 1.21428 0.96934 0.94656 1.16443 1.22158 0.93167 0.93554 0.98558 1.20372 0.90855 0.96625 0.91943 1.61901 1.43036 1.11220 1.09026 1.22924 0.97215 0.91384 0.97794 1.20840 0.93158 0.91468 0.89203 1.44132 1.30330 1.12586 1.44847 1.19225 0.92751 1.26597 0.99416 0.91619 1.25020 0.96480 1.02153 0.96126 1.70043 1.22984 1.39148 1.22701 0.86288 0.83274 0.78423 0.78794 1.21537 1.21808 1.20480 1.20965 0.98170 0.90429 0.88200 1.22623 0.92041 0.93630 1.00058 1.77359 1.01431 1.07242 1.24162 0.91190 0.89372 0.89752 0.81268 0.83803 0.93480 0.90071 0.95748 0.91755 0.95855 0.89452 0.93701 0.95705 0.92591 0.91921 0.95307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.47 59.85 0.69 1.57 16 2 N -0.38 -5.12 4.01 -68.16 -0.27 -5.40 16 3 C 0.05 0.57 11.49 -17.22 -0.20 0.38 16 4 C -0.26 -3.78 9.55 -40.01 -0.38 -4.16 16 5 C 0.09 1.53 5.93 -82.40 -0.49 1.04 16 6 C 0.13 2.13 5.53 -4.98 -0.03 2.11 16 7 N -0.53 -10.21 4.62 -235.76 -1.09 -11.30 16 8 C 0.04 0.75 5.46 -3.70 -0.02 0.73 16 9 C 0.18 4.58 5.43 -3.60 -0.02 4.56 16 10 N -0.60 -15.72 3.04 -172.02 -0.52 -16.24 16 11 C -0.25 -7.08 9.63 -15.06 -0.15 -7.23 16 12 H 0.07 1.81 7.89 -52.48 -0.41 1.40 16 13 C 0.00 0.01 4.93 -17.43 -0.09 -0.07 16 14 N -0.90 -27.00 11.15 55.49 0.62 -26.38 16 15 Si 0.90 22.08 29.59 -169.99 -5.03 17.05 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.15 3.33 6.69 -3.61 -0.02 3.30 16 20 C 0.05 0.86 5.62 -3.70 -0.02 0.84 16 21 N -0.28 -4.74 12.58 33.67 0.42 -4.31 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 26 H 0.14 1.84 8.06 -52.48 -0.42 1.41 16 27 H 0.05 0.70 8.13 -51.92 -0.42 0.28 16 28 H 0.08 1.22 7.97 -51.93 -0.41 0.81 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.29 6.15 -51.93 -0.32 0.97 16 31 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 2.44 6.11 -51.93 -0.32 2.12 16 33 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 36 H 0.06 1.02 7.99 -51.93 -0.41 0.60 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 301.65 15.07 4.55 4.55 Total: -1.00 -33.67 301.65 -7.71 -41.38 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.65 Total: -2.42 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -0.73 Total: 3.07 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -0.84 Total: -63.63 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.67 -7.71 -41.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211712476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.449 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds