Wall clock time and date at job start Sun Mar 29 2020 22:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.57527 * 2 1 4 4 C 1.53122 * 109.52479 * 239.83891 * 2 1 3 5 5 C 1.53029 * 109.27814 * 182.44519 * 4 2 1 6 6 N 1.46843 * 109.52883 * 59.17808 * 5 4 2 7 7 C 1.46901 * 111.00310 * 174.16002 * 6 5 4 8 8 C 1.53008 * 109.46998 * 196.06870 * 7 6 5 9 9 H 1.09002 * 109.46958 * 305.06501 * 8 7 6 10 10 C 1.47196 * 109.47050 * 65.06512 * 8 7 6 11 11 N 6.03822 * 123.37398 * 176.25336 * 2 1 3 12 12 C 1.52991 * 109.46960 * 185.06363 * 8 7 6 13 13 C 1.50696 * 109.47252 * 174.99857 * 12 8 7 14 14 H 1.08001 * 119.99981 * 359.97438 * 13 12 8 15 15 C 1.37874 * 120.00382 * 179.97438 * 13 12 8 16 16 N 1.31522 * 120.00363 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99915 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47421 * 90.00104 * 17 15 13 19 19 H 1.48502 * 109.46856 * 209.99928 * 17 15 13 20 20 H 1.48503 * 109.47036 * 329.99476 * 17 15 13 21 21 C 1.46846 * 111.19641 * 298.26096 * 6 5 4 22 22 C 1.53041 * 109.52755 * 61.74062 * 21 6 5 23 23 H 1.08999 * 109.50455 * 60.79461 * 22 21 6 24 24 C 1.52995 * 109.50742 * 180.88138 * 22 21 6 25 25 H 1.08997 * 109.47317 * 180.15451 * 1 2 3 26 26 H 1.08994 * 109.47314 * 300.16152 * 1 2 3 27 27 H 1.09007 * 109.46979 * 60.16311 * 1 2 3 28 28 H 1.09002 * 109.49962 * 62.49976 * 4 2 1 29 29 H 1.09004 * 109.50216 * 302.38889 * 4 2 1 30 30 H 1.09005 * 109.46237 * 179.19880 * 5 4 2 31 31 H 1.09003 * 109.46296 * 299.17511 * 5 4 2 32 32 H 1.08999 * 109.47239 * 316.06920 * 7 6 5 33 33 H 1.08995 * 109.46685 * 76.06983 * 7 6 5 34 34 H 1.08996 * 109.47325 * 295.00297 * 12 8 7 35 35 H 1.09005 * 109.47209 * 54.99890 * 12 8 7 36 36 H 0.97001 * 119.99817 * 180.02562 * 16 15 13 37 37 H 1.09008 * 109.46211 * 181.75349 * 21 6 5 38 38 H 1.08994 * 109.46382 * 301.73176 * 21 6 5 39 39 H 1.08999 * 109.47329 * 59.98953 * 24 22 21 40 40 H 1.08992 * 109.47398 * 179.97438 * 24 22 21 41 41 H 1.09007 * 109.46876 * 300.00080 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0418 -0.7251 -1.2478 5 6 3.5708 -0.7753 -1.2115 6 7 4.0102 -1.4790 0.0001 7 6 5.4670 -1.6679 0.0002 8 6 5.8440 -2.7265 1.0386 9 1 5.4417 -2.4414 2.0107 10 6 5.2839 -4.0276 0.6383 11 7 4.8516 -5.0317 0.3295 12 6 7.3675 -2.8330 1.1284 13 6 7.7402 -3.7850 2.2355 14 1 6.9676 -4.2656 2.8173 15 6 9.0675 -4.0423 2.5059 16 7 9.3927 -4.8735 3.4719 17 14 10.4038 -3.2105 1.5001 18 1 10.7794 -1.9254 2.1425 19 1 11.5943 -4.0955 1.4306 20 1 9.9003 -2.9494 0.1277 21 6 3.5707 -0.7752 1.2117 22 6 2.0416 -0.7250 1.2479 23 1 1.6446 -1.7399 1.2682 24 6 1.5846 0.0274 2.4992 25 1 -0.3634 -1.0276 0.0028 26 1 -0.3633 0.5163 0.8885 27 1 -0.3633 0.5113 -0.8915 28 1 1.7162 -0.1891 -2.1393 29 1 1.6446 -1.7400 -1.2674 30 1 3.9378 -1.3035 -2.0916 31 1 3.9675 0.2400 -1.2056 32 1 5.7909 -1.9962 -0.9875 33 1 5.9555 -0.7256 0.2481 34 1 7.7622 -3.2036 0.1824 35 1 7.7888 -1.8497 1.3375 36 1 10.3265 -5.0543 3.6622 37 1 3.9377 -1.3034 2.0918 38 1 3.9672 0.2401 1.2060 39 1 1.9808 1.0426 2.4777 40 1 0.4955 0.0632 2.5242 41 1 1.9521 -0.4872 3.3871 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245848949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:10 Heat of formation + Delta-G solvation = 0.110214 kcal Electronic energy + Delta-G solvation = -18635.698173 eV Core-core repulsion = 15935.400127 eV Total energy + Delta-G solvation = -2700.298046 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.57020 -36.82503 -34.85551 -33.46869 -32.30726 -31.63301 -28.75353 -27.01900 -26.15271 -23.26901 -22.19455 -21.43002 -21.13978 -19.64409 -16.86525 -16.76096 -15.69375 -15.03637 -14.72393 -14.64770 -14.31229 -14.14316 -13.55630 -13.32397 -12.88454 -12.74029 -12.42568 -12.28625 -12.13793 -12.04114 -11.90640 -11.82609 -11.47511 -11.30808 -11.17402 -11.03735 -10.71812 -10.61689 -10.41518 -10.28645 -10.13045 -9.87459 -9.67957 -9.29828 -8.60584 -8.19139 -6.09469 -4.09918 3.26263 3.35288 3.36315 3.73104 3.82653 3.96586 4.39244 4.62244 4.67402 4.71907 4.84210 5.02750 5.25355 5.26738 5.33904 5.40450 5.42592 5.50647 5.53041 5.53296 5.60246 5.72052 5.72624 5.81323 5.87368 5.90380 5.94369 6.02645 6.12053 6.16352 6.18854 6.28033 6.35877 6.44748 6.93801 7.12795 7.17888 7.23176 7.65439 8.42354 8.59602 8.94462 9.50501 11.03691 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.032376 B = 0.004846 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.624974 B = 5776.398050 C = 5846.762419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.065 0.935 4 C -0.112 4.112 5 C 0.057 3.943 6 N -0.541 5.541 7 C 0.060 3.940 8 C 0.022 3.978 9 H 0.104 0.896 10 C 0.255 3.745 11 N -0.474 5.474 12 C -0.006 4.006 13 C -0.527 4.527 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.264 1.264 21 C 0.057 3.943 22 C -0.085 4.085 23 H 0.078 0.922 24 C -0.148 4.148 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.025 0.975 35 H 0.032 0.968 36 H 0.264 0.736 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.953 14.529 -7.057 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.083 0.917 4 C -0.149 4.149 5 C -0.071 4.071 6 N -0.265 5.265 7 C -0.068 4.068 8 C 0.000 4.000 9 H 0.122 0.878 10 C -0.062 4.062 11 N -0.150 5.150 12 C -0.045 4.045 13 C -0.565 4.565 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.704 3.296 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.071 4.071 22 C -0.103 4.103 23 H 0.096 0.904 24 C -0.206 4.206 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.671 12.462 -7.436 20.636 hybrid contribution 1.448 1.480 -0.242 2.084 sum -13.223 13.942 -7.678 20.693 Atomic orbital electron populations 1.21860 0.95381 1.01834 1.01338 1.21208 0.95429 0.99054 0.94947 0.91683 1.21644 0.94890 1.01249 0.97151 1.22057 0.95618 0.96365 0.93041 1.61883 1.12852 1.49741 1.02041 1.22240 0.86642 0.97871 1.00093 1.18959 0.98284 0.84116 0.98662 0.87809 1.28678 0.91234 0.94087 0.92181 1.80986 1.11672 1.12120 1.10244 1.19642 0.87950 0.98280 0.98591 1.21029 0.93456 1.25882 1.16085 0.90787 1.24988 0.98636 0.94680 0.94782 1.69911 1.18007 1.35260 1.30375 0.86824 0.81713 0.79632 0.81432 1.20073 1.21309 1.18864 1.22224 0.94951 0.96500 0.93448 1.21195 0.94906 1.00099 0.94148 0.90358 1.21846 1.01086 1.00145 0.97488 0.92658 0.92535 0.93071 0.91873 0.91115 0.90905 0.95066 0.90357 0.92869 0.95691 0.95025 0.92586 0.89994 0.94812 0.92911 0.92430 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.90 37.16 0.33 -0.87 16 2 C -0.09 -0.82 2.29 -90.49 -0.21 -1.03 16 3 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.11 -1.11 5.38 -26.65 -0.14 -1.25 16 5 C 0.06 0.64 5.44 -3.84 -0.02 0.62 16 6 N -0.54 -7.17 4.31 -234.67 -1.01 -8.18 16 7 C 0.06 0.86 4.34 -3.82 -0.02 0.85 16 8 C 0.02 0.39 2.23 -93.41 -0.21 0.19 16 9 H 0.10 1.81 6.49 -51.93 -0.34 1.48 16 10 C 0.26 5.39 13.67 -20.76 -0.28 5.11 16 11 N -0.47 -10.96 18.54 42.15 0.78 -10.18 16 12 C -0.01 -0.12 3.49 -27.89 -0.10 -0.22 16 13 C -0.53 -14.29 9.15 -34.44 -0.32 -14.60 16 14 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 17 Si 0.88 20.71 27.47 -169.99 -4.67 16.05 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 21 C 0.06 0.68 4.59 -3.83 -0.02 0.66 16 22 C -0.08 -0.89 2.38 -90.54 -0.22 -1.11 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 24 C -0.15 -1.34 8.90 37.15 0.33 -1.01 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.43 6.52 -51.93 -0.34 0.09 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.81 7.96 -51.93 -0.41 0.40 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 1.10 7.87 -51.93 -0.41 0.69 16 33 H 0.05 0.68 8.05 -51.93 -0.42 0.27 16 34 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 35 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.08 1.05 6.42 -51.92 -0.33 0.72 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.47 6.52 -51.93 -0.34 0.13 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -30.77 323.41 -7.37 -38.15 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -7.16 Total: -3.52 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -0.96 Total: -10.77 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.54 Total: -44.78 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.05 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.77 -7.37 -38.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245848949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.259 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds