Wall clock time and date at job start Sun Mar 29 2020 22:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.57433 * 2 1 4 4 C 1.53115 * 109.51923 * 239.84545 * 2 1 3 5 5 C 1.53038 * 109.27768 * 182.44002 * 4 2 1 6 6 N 1.46847 * 109.52308 * 59.17941 * 5 4 2 7 7 C 1.46900 * 111.00283 * 174.16440 * 6 5 4 8 8 C 1.52999 * 109.46868 * 293.83724 * 7 6 5 9 9 H 1.09000 * 109.47310 * 56.33888 * 8 7 6 10 10 C 1.47205 * 109.47107 * 296.33999 * 8 7 6 11 11 N 5.99190 * 123.17136 * 187.99084 * 2 1 3 12 12 C 1.52999 * 109.47419 * 176.34250 * 8 7 6 13 13 C 1.50696 * 109.47696 * 184.99965 * 12 8 7 14 14 H 1.08002 * 119.99705 * 359.97438 * 13 12 8 15 15 C 1.37869 * 120.00346 * 180.02562 * 13 12 8 16 16 N 1.31512 * 120.00001 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00196 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47120 * 89.99442 * 17 15 13 19 19 H 1.48498 * 109.47289 * 209.99998 * 17 15 13 20 20 H 1.48507 * 109.46835 * 329.99640 * 17 15 13 21 21 C 1.46849 * 111.19599 * 298.25857 * 6 5 4 22 22 C 1.53032 * 109.52319 * 61.74218 * 21 6 5 23 23 H 1.08998 * 109.53650 * 60.78421 * 22 21 6 24 24 C 1.53008 * 109.50363 * 180.87964 * 22 21 6 25 25 H 1.09000 * 109.47269 * 180.15406 * 1 2 3 26 26 H 1.08998 * 109.47042 * 300.15587 * 1 2 3 27 27 H 1.08997 * 109.47147 * 60.15443 * 1 2 3 28 28 H 1.08994 * 109.50708 * 62.49997 * 4 2 1 29 29 H 1.08998 * 109.50600 * 302.37571 * 4 2 1 30 30 H 1.08995 * 109.46324 * 299.16409 * 5 4 2 31 31 H 1.08998 * 109.46089 * 179.18618 * 5 4 2 32 32 H 1.09004 * 109.47430 * 173.83689 * 7 6 5 33 33 H 1.08997 * 109.47091 * 53.83343 * 7 6 5 34 34 H 1.09011 * 109.47111 * 64.99488 * 12 8 7 35 35 H 1.09003 * 109.46734 * 305.00248 * 12 8 7 36 36 H 0.97005 * 120.00166 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.46452 * 181.76070 * 21 6 5 38 38 H 1.08995 * 109.46360 * 301.72342 * 21 6 5 39 39 H 1.09001 * 109.46749 * 179.80814 * 24 22 21 40 40 H 1.09000 * 109.46733 * 299.80132 * 24 22 21 41 41 H 1.08993 * 109.47035 * 59.80458 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2479 5 6 3.5708 -0.7751 -1.2118 6 7 4.0102 -1.4789 -0.0002 7 6 5.4670 -1.6678 -0.0002 8 6 5.8579 -2.6192 -1.1328 9 1 5.4894 -2.2267 -2.0805 10 6 5.2656 -3.9443 -0.8869 11 7 4.8085 -4.9667 -0.6972 12 6 7.3817 -2.7446 -1.1906 13 6 7.7720 -3.5828 -2.3806 14 1 7.0095 -3.9861 -3.0304 15 6 9.1025 -3.8356 -2.6391 16 7 10.0310 -3.3449 -1.8475 17 14 9.5864 -4.8740 -4.1146 18 1 9.7801 -3.9954 -5.2960 19 1 10.8515 -5.5936 -3.8200 20 1 8.5120 -5.8585 -4.4007 21 6 3.5708 -0.7752 1.2115 22 6 2.0418 -0.7251 1.2477 23 1 1.6442 -1.7398 1.2677 24 6 1.5848 0.0273 2.4992 25 1 -0.3634 -1.0276 0.0028 26 1 -0.3633 0.5162 0.8886 27 1 -0.3633 0.5114 -0.8913 28 1 1.7161 -0.1889 -2.1393 29 1 1.6447 -1.7399 -1.2675 30 1 3.9674 0.2401 -1.2060 31 1 3.9376 -1.3034 -2.0918 32 1 5.7785 -2.0919 0.9544 33 1 5.9581 -0.7060 -0.1479 34 1 7.7421 -3.2193 -0.2779 35 1 7.8245 -1.7530 -1.2837 36 1 10.9670 -3.5230 -2.0292 37 1 3.9378 -1.3034 2.0916 38 1 3.9675 0.2400 1.2059 39 1 0.4957 0.0656 2.5226 40 1 1.9493 -0.4893 3.3870 41 1 1.9838 1.0414 2.4793 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245848954.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:11 Heat of formation + Delta-G solvation = -3.652586 kcal Electronic energy + Delta-G solvation = -18549.950745 eV Core-core repulsion = 15849.489531 eV Total energy + Delta-G solvation = -2700.461214 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.52229 -36.77340 -34.80075 -33.42899 -32.20570 -31.54968 -28.57090 -27.04037 -25.59839 -23.40990 -22.29308 -21.72136 -20.97060 -19.61040 -16.63646 -16.48023 -15.53208 -15.01761 -14.71996 -14.62883 -14.43910 -14.23410 -13.33556 -13.24271 -13.01751 -12.61300 -12.27789 -12.10915 -12.06700 -11.94073 -11.83723 -11.71319 -11.35142 -11.18973 -11.04243 -10.99287 -10.67125 -10.63255 -10.52126 -10.34407 -10.16625 -9.94495 -9.49836 -9.19122 -8.44535 -8.11513 -6.08466 -4.11499 3.29934 3.36872 3.41815 3.77667 3.88047 4.03107 4.42499 4.62662 4.71907 4.75144 4.94468 5.07772 5.29735 5.32420 5.37463 5.42228 5.46077 5.48222 5.57228 5.60485 5.66783 5.74637 5.79159 5.83271 5.90949 5.91638 6.06261 6.11325 6.15561 6.18599 6.20716 6.41967 6.46352 6.54997 7.26105 7.28289 7.44310 7.54847 7.86929 8.24800 8.63586 8.93319 9.53957 11.02490 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.038684 B = 0.004442 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.639293 B = 6301.372075 C = 6433.937894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.065 0.935 4 C -0.112 4.112 5 C 0.050 3.950 6 N -0.542 5.542 7 C 0.063 3.937 8 C 0.010 3.990 9 H 0.099 0.901 10 C 0.258 3.742 11 N -0.481 5.481 12 C 0.031 3.969 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.892 5.892 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.062 3.938 22 C -0.085 4.085 23 H 0.077 0.923 24 C -0.147 4.147 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.026 0.974 35 H 0.037 0.963 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.135 10.875 5.057 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.078 4.078 6 N -0.266 5.266 7 C -0.065 4.065 8 C -0.012 4.012 9 H 0.117 0.883 10 C -0.059 4.059 11 N -0.158 5.158 12 C -0.008 4.008 13 C -0.563 4.563 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.719 3.281 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.066 4.066 22 C -0.104 4.104 23 H 0.096 0.904 24 C -0.205 4.205 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.851 8.874 5.371 18.943 hybrid contribution 1.030 0.595 -0.904 1.494 sum -14.821 9.468 4.467 18.146 Atomic orbital electron populations 1.21861 0.95429 1.01789 1.01322 1.21207 0.95369 0.99095 0.94973 0.91655 1.21646 0.95097 1.01162 0.97050 1.22166 0.95353 0.96563 0.93675 1.61929 1.13144 1.49587 1.01937 1.22211 0.86196 0.98488 0.99647 1.19252 0.99489 0.83995 0.98443 0.88306 1.28828 0.90929 0.94297 0.91860 1.80969 1.12129 1.12569 1.10117 1.19174 0.84732 0.98574 0.98274 1.21142 0.92103 1.32263 1.10840 0.92518 1.24946 0.96609 0.95790 0.96590 1.69939 1.00503 1.45025 1.37619 0.86599 0.78083 0.80576 0.82882 1.20485 1.21149 1.19826 1.22095 0.94941 0.96450 0.93076 1.21195 0.94917 1.00043 0.94197 0.90440 1.21845 1.01141 1.00131 0.97358 0.92696 0.92663 0.92966 0.91732 0.91183 0.94825 0.90036 0.90292 0.92979 0.95574 0.94510 0.92817 0.90916 0.95002 0.92393 0.92706 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.90 37.16 0.33 -0.91 16 2 C -0.09 -0.86 2.29 -90.50 -0.21 -1.06 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.11 -1.22 5.38 -26.65 -0.14 -1.36 16 5 C 0.05 0.63 5.30 -3.83 -0.02 0.61 16 6 N -0.54 -7.54 4.32 -234.67 -1.01 -8.55 16 7 C 0.06 0.97 4.34 -3.82 -0.02 0.95 16 8 C 0.01 0.19 2.12 -93.41 -0.20 -0.01 16 9 H 0.10 1.75 6.29 -51.93 -0.33 1.43 16 10 C 0.26 5.51 13.64 -20.76 -0.28 5.23 16 11 N -0.48 -11.15 18.54 42.15 0.78 -10.37 16 12 C 0.03 0.73 4.42 -27.89 -0.12 0.60 16 13 C -0.53 -14.09 8.60 -34.44 -0.30 -14.39 16 14 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 17 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 21 C 0.06 0.74 4.74 -3.84 -0.02 0.72 16 22 C -0.08 -0.88 2.38 -90.54 -0.22 -1.10 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 24 C -0.15 -1.26 8.90 37.16 0.33 -0.92 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.42 6.52 -51.93 -0.34 0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 1.08 6.16 -51.93 -0.32 0.76 16 32 H 0.08 1.22 7.98 -51.93 -0.41 0.81 16 33 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.07 0.87 8.01 -51.93 -0.42 0.45 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.45 6.51 -51.93 -0.34 0.11 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 326.65 15.07 4.92 4.92 Total: -1.00 -29.63 326.65 -7.73 -37.37 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -7.18 Total: -4.82 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -0.96 Total: -10.01 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.50 Total: -43.84 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.63 -7.73 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245848954.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.714 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds