Wall clock time and date at job start Sun Mar 29 2020 22:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46912 * 2 1 4 4 H 1.08997 * 109.50199 * 305.08306 * 3 2 1 5 5 C 1.53119 * 109.50183 * 65.20011 * 3 2 1 6 6 C 1.53116 * 109.16089 * 177.59141 * 5 3 2 7 7 C 1.53029 * 109.28021 * 302.34640 * 6 5 3 8 8 N 1.46846 * 109.52433 * 59.17765 * 7 6 5 9 9 C 1.46900 * 111.00253 * 174.16418 * 8 7 6 10 10 C 1.53002 * 109.47269 * 200.06216 * 9 8 7 11 11 H 1.09006 * 109.46922 * 305.21339 * 10 9 8 12 12 C 1.47198 * 109.47350 * 65.21172 * 10 9 8 13 13 N 6.50129 * 119.78418 * 325.20783 * 2 1 3 14 14 C 1.52998 * 109.47196 * 185.21684 * 10 9 8 15 15 C 1.50703 * 109.47252 * 174.99581 * 14 10 9 16 16 H 1.08002 * 119.99709 * 0.02562 * 15 14 10 17 17 C 1.37876 * 119.99998 * 179.97438 * 15 14 10 18 18 N 1.31512 * 120.00302 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99681 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47292 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46778 * 120.00373 * 19 17 15 22 22 H 1.48506 * 109.46997 * 240.00051 * 19 17 15 23 23 C 1.46846 * 111.19824 * 298.25728 * 8 7 6 24 24 H 1.08998 * 109.47123 * 59.99751 * 1 2 3 25 25 H 1.08995 * 109.46808 * 299.99527 * 1 2 3 26 26 H 1.08999 * 109.46984 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47123 * 120.00249 * 2 1 3 28 28 H 1.09005 * 109.46894 * 240.00399 * 2 1 3 29 29 H 1.09004 * 109.52458 * 297.50200 * 5 3 2 30 30 H 1.09004 * 109.52425 * 57.68326 * 5 3 2 31 31 H 1.09002 * 109.50375 * 182.40261 * 6 5 3 32 32 H 1.09000 * 109.49807 * 62.28879 * 6 5 3 33 33 H 1.09005 * 109.46088 * 299.16394 * 7 6 5 34 34 H 1.09001 * 109.45867 * 179.18645 * 7 6 5 35 35 H 1.09001 * 109.46827 * 320.05399 * 9 8 7 36 36 H 1.08994 * 109.47558 * 80.05654 * 9 8 7 37 37 H 1.09000 * 109.47255 * 294.99272 * 14 10 9 38 38 H 1.09002 * 109.47535 * 54.99732 * 14 10 9 39 39 H 0.96993 * 120.00502 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.46678 * 301.72539 * 23 8 7 41 41 H 1.08998 * 109.46350 * 181.75554 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6045 1.9824 -0.8408 5 6 1.6396 2.1263 1.3102 6 6 2.2050 3.5491 1.3279 7 6 3.7253 3.4908 1.1636 8 7 4.0569 2.8288 -0.1045 9 6 5.5023 2.8777 -0.3618 10 6 5.7630 2.6525 -1.8525 11 1 5.2939 1.7200 -2.1666 12 6 5.1966 3.7708 -2.6242 13 7 4.7595 4.6338 -3.2196 14 6 7.2707 2.5737 -2.1005 15 6 7.5249 2.2300 -3.5456 16 1 6.6941 2.0830 -4.2199 17 6 8.8180 2.1044 -4.0072 18 7 9.8296 2.2839 -3.1863 19 14 9.1330 1.6791 -5.7987 20 1 7.8366 1.5303 -6.5075 21 1 9.9222 2.7650 -6.4338 22 1 9.8908 0.4045 -5.8790 23 6 3.5652 1.4452 -0.1257 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 0.5527 2.1652 1.3835 30 1 2.0423 1.5638 2.1526 31 1 1.9594 4.0266 2.2765 32 1 1.7721 4.1228 0.5083 33 1 4.1586 2.9286 1.9909 34 1 4.1294 4.5031 1.1612 35 1 5.8908 3.8530 -0.0684 36 1 6.0008 2.0993 0.2159 37 1 7.7276 3.5361 -1.8701 38 1 7.7042 1.8037 -1.4623 39 1 10.7393 2.1952 -3.5109 40 1 3.9993 0.8927 0.7076 41 1 3.8530 0.9718 -1.0644 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248901212.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:17 Heat of formation + Delta-G solvation = -6.714284 kcal Electronic energy + Delta-G solvation = -18492.014055 eV Core-core repulsion = 15791.420077 eV Total energy + Delta-G solvation = -2700.593979 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.36024 -36.62501 -34.87757 -33.62589 -32.55779 -30.96400 -29.40745 -26.90712 -24.57664 -23.82768 -22.36123 -21.59032 -20.81116 -19.65626 -16.66046 -16.49898 -15.74434 -15.00473 -14.73318 -14.60622 -14.35372 -14.09106 -13.66299 -13.22648 -13.03640 -12.78405 -12.54045 -12.24885 -12.11854 -11.89035 -11.67098 -11.26176 -11.20824 -11.17459 -11.05016 -10.94589 -10.69739 -10.59233 -10.52173 -10.32664 -10.22212 -9.99692 -9.49166 -9.18021 -8.44544 -8.11954 -6.08220 -4.11033 3.29414 3.37661 3.42583 3.78227 3.88803 4.01463 4.42789 4.68023 4.76661 4.82975 4.95796 5.05055 5.18763 5.21348 5.30104 5.42390 5.48671 5.57597 5.59052 5.62004 5.65761 5.79120 5.82186 5.86311 5.90715 5.98284 6.04649 6.05869 6.07938 6.17054 6.30694 6.42392 6.44963 6.55833 7.25730 7.28523 7.44979 7.55652 7.87561 8.25471 8.64355 8.94142 9.54445 11.02811 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.027258 B = 0.004797 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.965233 B = 5835.586322 C = 6200.723203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.086 4.086 4 H 0.078 0.922 5 C -0.114 4.114 6 C -0.117 4.117 7 C 0.057 3.943 8 N -0.542 5.542 9 C 0.063 3.937 10 C 0.013 3.987 11 H 0.099 0.901 12 C 0.259 3.741 13 N -0.483 5.483 14 C 0.030 3.970 15 C -0.524 4.524 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.058 3.942 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.033 0.967 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.521 -3.982 11.648 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.104 4.104 4 H 0.096 0.904 5 C -0.152 4.152 6 C -0.155 4.155 7 C -0.071 4.071 8 N -0.266 5.266 9 C -0.066 4.066 10 C -0.009 4.009 11 H 0.116 0.884 12 C -0.058 4.058 13 N -0.160 5.160 14 C -0.008 4.008 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.070 4.070 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.225 -2.418 10.387 18.588 hybrid contribution 0.955 -0.998 -0.152 1.390 sum -14.270 -3.416 10.234 17.890 Atomic orbital electron populations 1.21794 0.96001 1.01275 1.01819 1.21537 0.95778 0.96355 1.02070 1.21222 0.95189 0.95628 0.98395 0.90399 1.21661 1.00294 0.95890 0.97348 1.21581 0.95267 0.97086 1.01554 1.22061 0.95965 0.99057 0.90016 1.61901 1.14923 1.16673 1.33125 1.22219 0.86564 1.02228 0.95584 1.19208 1.00088 0.91484 0.90145 0.88367 1.28855 0.90947 0.93698 0.92310 1.80968 1.12039 1.12085 1.10897 1.19183 0.85230 0.98589 0.97825 1.21187 0.92227 1.48111 0.94697 0.92457 1.24949 0.96213 0.95129 0.97671 1.69944 0.98716 1.49552 1.34899 0.86549 0.78400 0.78030 0.85188 1.19656 1.20972 1.20871 1.22190 0.94507 0.88926 1.01359 0.92748 0.92718 0.93045 0.92182 0.91701 0.91963 0.92452 0.91924 0.91232 0.95064 0.90952 0.90478 0.92723 0.95617 0.94511 0.92881 0.94853 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.67 37.16 0.36 -0.89 16 2 C -0.12 -1.10 5.40 -26.73 -0.14 -1.25 16 3 C -0.09 -0.92 2.35 -90.54 -0.21 -1.13 16 4 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 5 C -0.11 -1.10 4.98 -26.61 -0.13 -1.23 16 6 C -0.12 -1.22 6.09 -26.66 -0.16 -1.38 16 7 C 0.06 0.68 5.43 -3.84 -0.02 0.65 16 8 N -0.54 -7.51 4.29 -234.68 -1.01 -8.52 16 9 C 0.06 0.96 4.37 -3.82 -0.02 0.94 16 10 C 0.01 0.24 2.27 -93.41 -0.21 0.03 16 11 H 0.10 1.76 6.70 -51.93 -0.35 1.41 16 12 C 0.26 5.54 13.67 -20.76 -0.28 5.26 16 13 N -0.48 -11.20 18.54 42.15 0.78 -10.42 16 14 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 15 C -0.52 -14.08 8.60 -34.44 -0.30 -14.37 16 16 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.06 0.71 4.57 -3.83 -0.02 0.70 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.42 6.63 -51.93 -0.34 0.08 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.55 6.70 -51.93 -0.35 0.20 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.87 7.93 -51.93 -0.41 0.46 16 35 H 0.08 1.19 7.79 -51.93 -0.40 0.78 16 36 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 1.04 6.65 -51.93 -0.35 0.69 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -29.68 328.26 -8.15 -37.82 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -7.22 Total: -4.86 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -1.36 Total: -10.45 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.51 Total: -43.87 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.68 -8.15 -37.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248901212.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.108 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds