Wall clock time and date at job start Sun Mar 29 2020 22:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46912 * 2 1 4 4 H 1.08997 * 109.50199 * 305.08306 * 3 2 1 5 5 C 1.53119 * 109.50183 * 65.20011 * 3 2 1 6 6 C 1.53116 * 109.16089 * 177.59141 * 5 3 2 7 7 C 1.53029 * 109.28021 * 302.34640 * 6 5 3 8 8 N 1.46846 * 109.52433 * 59.17765 * 7 6 5 9 9 C 1.46900 * 111.00253 * 174.16418 * 8 7 6 10 10 C 1.53002 * 109.47269 * 200.06216 * 9 8 7 11 11 H 1.09006 * 109.46922 * 305.21339 * 10 9 8 12 12 C 1.47198 * 109.47350 * 65.21172 * 10 9 8 13 13 N 6.50129 * 119.78418 * 325.20783 * 2 1 3 14 14 C 1.52998 * 109.47196 * 185.21684 * 10 9 8 15 15 C 1.50703 * 109.47252 * 174.99581 * 14 10 9 16 16 H 1.08002 * 119.99709 * 0.02562 * 15 14 10 17 17 C 1.37876 * 119.99998 * 179.97438 * 15 14 10 18 18 N 1.31512 * 120.00302 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99681 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47292 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46778 * 120.00373 * 19 17 15 22 22 H 1.48506 * 109.46997 * 240.00051 * 19 17 15 23 23 C 1.46846 * 111.19824 * 298.25728 * 8 7 6 24 24 H 1.08998 * 109.47123 * 59.99751 * 1 2 3 25 25 H 1.08995 * 109.46808 * 299.99527 * 1 2 3 26 26 H 1.08999 * 109.46984 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47123 * 120.00249 * 2 1 3 28 28 H 1.09005 * 109.46894 * 240.00399 * 2 1 3 29 29 H 1.09004 * 109.52458 * 297.50200 * 5 3 2 30 30 H 1.09004 * 109.52425 * 57.68326 * 5 3 2 31 31 H 1.09002 * 109.50375 * 182.40261 * 6 5 3 32 32 H 1.09000 * 109.49807 * 62.28879 * 6 5 3 33 33 H 1.09005 * 109.46088 * 299.16394 * 7 6 5 34 34 H 1.09001 * 109.45867 * 179.18645 * 7 6 5 35 35 H 1.09001 * 109.46827 * 320.05399 * 9 8 7 36 36 H 1.08994 * 109.47558 * 80.05654 * 9 8 7 37 37 H 1.09000 * 109.47255 * 294.99272 * 14 10 9 38 38 H 1.09002 * 109.47535 * 54.99732 * 14 10 9 39 39 H 0.96993 * 120.00502 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.46678 * 301.72539 * 23 8 7 41 41 H 1.08998 * 109.46350 * 181.75554 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6045 1.9824 -0.8408 5 6 1.6396 2.1263 1.3102 6 6 2.2050 3.5491 1.3279 7 6 3.7253 3.4908 1.1636 8 7 4.0569 2.8288 -0.1045 9 6 5.5023 2.8777 -0.3618 10 6 5.7630 2.6525 -1.8525 11 1 5.2939 1.7200 -2.1666 12 6 5.1966 3.7708 -2.6242 13 7 4.7595 4.6338 -3.2196 14 6 7.2707 2.5737 -2.1005 15 6 7.5249 2.2300 -3.5456 16 1 6.6941 2.0830 -4.2199 17 6 8.8180 2.1044 -4.0072 18 7 9.8296 2.2839 -3.1863 19 14 9.1330 1.6791 -5.7987 20 1 7.8366 1.5303 -6.5075 21 1 9.9222 2.7650 -6.4338 22 1 9.8908 0.4045 -5.8790 23 6 3.5652 1.4452 -0.1257 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 0.5527 2.1652 1.3835 30 1 2.0423 1.5638 2.1526 31 1 1.9594 4.0266 2.2765 32 1 1.7721 4.1228 0.5083 33 1 4.1586 2.9286 1.9909 34 1 4.1294 4.5031 1.1612 35 1 5.8908 3.8530 -0.0684 36 1 6.0008 2.0993 0.2159 37 1 7.7276 3.5361 -1.8701 38 1 7.7042 1.8037 -1.4623 39 1 10.7393 2.1952 -3.5109 40 1 3.9993 0.8927 0.7076 41 1 3.8530 0.9718 -1.0644 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248901212.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:16 Heat of formation + Delta-G solvation = -22.790510 kcal Electronic energy + Delta-G solvation = -18492.711173 eV Core-core repulsion = 15791.420077 eV Total energy + Delta-G solvation = -2701.291096 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.36100 -38.13400 -36.12300 -35.35218 -33.94293 -32.37301 -30.24308 -28.57037 -25.85528 -24.72800 -23.84593 -23.08129 -21.70986 -20.51760 -18.52801 -18.17079 -16.95919 -16.43218 -15.94904 -15.66570 -15.51741 -15.11122 -14.88127 -14.44287 -14.29635 -14.10570 -13.87350 -13.72428 -13.35498 -13.25802 -13.03914 -12.80961 -12.70088 -12.51165 -12.35163 -12.22008 -12.01844 -11.82942 -11.71850 -11.47248 -11.39435 -11.24221 -11.03028 -10.83096 -10.55671 -9.17473 -8.19710 -6.27921 1.38780 1.41888 1.52481 2.06696 2.14506 2.41404 2.94671 3.15774 3.36065 3.85885 3.89784 3.99441 4.20406 4.28443 4.36559 4.43858 4.48102 4.56487 4.66934 4.71049 4.74938 4.79948 4.86713 4.90284 4.98356 5.05499 5.07622 5.12275 5.18714 5.28560 5.30098 5.38431 5.46292 5.56060 5.61435 5.63430 5.79094 6.12259 6.24715 6.28628 6.82984 6.93528 7.40757 8.91496 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.027258 B = 0.004797 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.965233 B = 5835.586322 C = 6200.723203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.082 4.082 4 H 0.058 0.942 5 C -0.110 4.110 6 C -0.114 4.114 7 C 0.055 3.945 8 N -0.556 5.556 9 C 0.073 3.927 10 C 0.024 3.976 11 H 0.112 0.888 12 C 0.268 3.732 13 N -0.516 5.516 14 C 0.038 3.962 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.948 3.052 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.056 3.944 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.001 0.999 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.044 0.956 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.539 -4.948 12.518 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.101 4.101 4 H 0.077 0.923 5 C -0.147 4.147 6 C -0.152 4.152 7 C -0.072 4.072 8 N -0.281 5.281 9 C -0.056 4.056 10 C 0.002 3.998 11 H 0.129 0.871 12 C -0.048 4.048 13 N -0.193 5.193 14 C -0.001 4.001 15 C -0.576 4.576 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.563 5.563 19 Si 0.774 3.226 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.072 4.072 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.020 0.980 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.258 -3.390 11.263 20.067 hybrid contribution 1.262 -0.687 -0.411 1.494 sum -14.996 -4.076 10.852 18.954 Atomic orbital electron populations 1.21779 0.95177 1.01882 1.01867 1.21510 0.96463 0.95234 1.02220 1.21178 0.93914 0.96565 0.98424 0.92330 1.21640 1.01032 0.95212 0.96837 1.21569 0.94011 0.97648 1.01933 1.22128 0.97102 0.98699 0.89296 1.61844 1.13611 1.17891 1.34755 1.22032 0.88133 1.02640 0.92824 1.19154 0.96970 0.91204 0.92480 0.87071 1.29340 0.90252 0.93559 0.91645 1.80961 1.13112 1.13218 1.12054 1.18999 0.88065 0.96949 0.96084 1.21565 0.92148 1.47571 0.96330 0.92963 1.25696 0.96242 0.95271 1.01417 1.70032 0.99091 1.50632 1.36585 0.85648 0.78227 0.78053 0.80672 1.19458 1.21065 1.19687 1.22248 0.95647 0.88056 1.01203 0.93405 0.91971 0.92184 0.91296 0.92293 0.90810 0.91461 0.89956 0.92851 0.93859 0.91470 0.90724 0.91237 0.98019 0.94690 0.92686 0.93822 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.67 71.98 0.70 -1.48 16 2 C -0.12 -1.93 5.40 30.60 0.17 -1.76 16 3 C -0.08 -1.63 2.35 -10.74 -0.03 -1.65 16 4 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 5 C -0.11 -1.84 4.98 30.67 0.15 -1.69 16 6 C -0.11 -2.14 6.09 30.64 0.19 -1.95 16 7 C 0.06 1.21 5.43 86.32 0.47 1.68 16 8 N -0.56 -14.73 4.29 -896.38 -3.85 -18.58 16 9 C 0.07 2.15 4.37 86.30 0.38 2.53 16 10 C 0.02 0.89 2.27 -12.60 -0.03 0.86 16 11 H 0.11 3.90 6.70 -2.38 -0.02 3.89 16 12 C 0.27 11.48 13.67 89.44 1.22 12.71 16 13 N -0.52 -24.02 18.54 20.00 0.37 -23.65 16 14 C 0.04 1.78 4.42 29.85 0.13 1.91 16 15 C -0.54 -28.93 8.60 25.60 0.22 -28.71 16 16 H 0.05 2.81 7.59 -2.91 -0.02 2.78 16 17 C 0.01 0.70 5.46 84.65 0.46 1.16 16 18 N -0.92 -53.30 13.29 21.45 0.28 -53.02 16 19 Si 0.95 43.79 29.54 68.60 2.03 45.82 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C 0.06 1.29 4.57 86.33 0.39 1.69 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.81 6.63 -2.39 -0.02 0.79 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.07 1.09 6.70 -2.38 -0.02 1.07 16 30 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.07 1.53 7.93 -2.39 -0.02 1.51 16 35 H 0.07 2.24 7.79 -2.39 -0.02 2.23 16 36 H 0.07 1.86 8.00 -2.39 -0.02 1.84 16 37 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 1.72 6.65 -2.39 -0.02 1.71 16 Total: -1.00 -62.46 328.26 4.24 -58.22 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.97 Total: 5.91 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 4.42 Total: -14.71 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -3.19 Total: -95.25 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -62.46 4.24 -58.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248901212.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.434 kcal (2) G-P(sol) polarization free energy of solvation -62.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds