Wall clock time and date at job start Sun Mar 29 2020 22:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.53481 * 2 1 4 4 C 1.53119 * 109.50208 * 239.90137 * 2 1 3 5 5 C 1.53126 * 109.16048 * 182.40224 * 4 2 1 6 6 H 1.09006 * 109.50177 * 297.71578 * 5 4 2 7 7 C 1.52996 * 109.50254 * 177.59784 * 5 4 2 8 8 C 1.53034 * 109.27454 * 57.65518 * 5 4 2 9 9 N 1.46845 * 109.52676 * 300.81918 * 8 5 4 10 10 C 1.46898 * 111.00565 * 185.84030 * 9 8 5 11 11 C 1.53005 * 109.46979 * 65.79001 * 10 9 8 12 12 H 1.09005 * 109.46795 * 305.00617 * 11 10 9 13 13 C 1.47203 * 109.46763 * 65.00212 * 11 10 9 14 14 N 5.45530 * 145.88602 * 61.19619 * 2 1 3 15 15 C 1.52996 * 109.47411 * 185.00275 * 11 10 9 16 16 C 1.50698 * 109.47258 * 174.99915 * 15 11 10 17 17 H 1.07998 * 120.00120 * 0.02562 * 16 15 11 18 18 C 1.37882 * 119.99887 * 179.97438 * 16 15 11 19 19 N 1.31509 * 119.99843 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00149 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47361 * 89.99347 * 20 18 16 22 22 H 1.48497 * 109.47113 * 210.00060 * 20 18 16 23 23 H 1.48501 * 109.46738 * 329.99441 * 20 18 16 24 24 C 1.46850 * 111.19654 * 61.74248 * 9 8 5 25 25 H 1.09004 * 109.47208 * 180.09906 * 1 2 3 26 26 H 1.09003 * 109.47038 * 300.09416 * 1 2 3 27 27 H 1.08996 * 109.47273 * 60.09885 * 1 2 3 28 28 H 1.08999 * 109.52185 * 62.50116 * 4 2 1 29 29 H 1.09000 * 109.57842 * 302.33810 * 4 2 1 30 30 H 1.08999 * 109.47332 * 59.99997 * 7 5 4 31 31 H 1.09001 * 109.46812 * 180.02562 * 7 5 4 32 32 H 1.08995 * 109.47049 * 299.99849 * 7 5 4 33 33 H 1.08995 * 109.46502 * 60.83953 * 8 5 4 34 34 H 1.09005 * 109.46032 * 180.80589 * 8 5 4 35 35 H 1.08999 * 109.47807 * 185.78920 * 10 9 8 36 36 H 1.09002 * 109.47253 * 305.79710 * 10 9 8 37 37 H 1.09004 * 109.47209 * 295.00633 * 15 11 10 38 38 H 1.09002 * 109.46812 * 54.99796 * 15 11 10 39 39 H 0.96998 * 120.00419 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.46186 * 178.24176 * 24 9 8 41 41 H 1.09004 * 109.45360 * 58.27331 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2487 5 6 3.5712 -0.7719 -1.2108 6 1 3.9678 0.2433 -1.2298 7 6 4.0882 -1.5460 -2.4250 8 6 4.0229 -1.4729 0.0723 9 7 3.5093 -0.7421 1.2378 10 6 4.0372 -1.3058 2.4874 11 6 5.5497 -1.0827 2.5486 12 1 6.0145 -1.4973 1.6540 13 6 5.8301 0.3604 2.6233 14 7 6.0466 1.4741 2.6810 15 6 6.1180 -1.7775 3.7875 16 6 7.6206 -1.6627 3.7830 17 1 8.1202 -1.1454 2.9772 18 6 8.3575 -2.2170 4.8081 19 7 9.6687 -2.1164 4.8044 20 14 7.4933 -3.1110 6.2021 21 1 7.3543 -4.5487 5.8574 22 1 8.2914 -2.9754 7.4471 23 1 6.1472 -2.5195 6.4102 24 6 2.0409 -0.7234 1.2480 25 1 -0.3634 -1.0277 0.0018 26 1 -0.3633 0.5153 0.8892 27 1 -0.3633 0.5123 -0.8908 28 1 1.7156 -0.1870 -2.1398 29 1 1.6453 -1.7392 -1.2701 30 1 3.7631 -1.0482 -3.3386 31 1 5.1773 -1.5803 -2.3972 32 1 3.6924 -2.5613 -2.4040 33 1 3.6375 -2.4924 0.0842 34 1 5.1121 -1.4961 0.1094 35 1 3.5629 -0.8143 3.3368 36 1 3.8260 -2.3746 2.5217 37 1 5.7200 -1.3034 4.6847 38 1 5.8340 -2.8298 3.7763 39 1 10.1872 -2.5067 5.5253 40 1 1.6905 -0.2022 2.1390 41 1 1.6649 -1.7465 1.2543 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249514898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:02 Heat of formation + Delta-G solvation = -1.066194 kcal Electronic energy + Delta-G solvation = -18628.655758 eV Core-core repulsion = 15928.306699 eV Total energy + Delta-G solvation = -2700.349059 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.53912 -36.72400 -34.54638 -33.55401 -33.27201 -31.53179 -27.62912 -26.73371 -26.61191 -24.44145 -21.62151 -21.47983 -20.79978 -19.71366 -16.87475 -16.73272 -15.76903 -15.21823 -14.77215 -14.59863 -14.46540 -14.01539 -13.33139 -13.22597 -12.86652 -12.71620 -12.55164 -12.41422 -12.23573 -12.06614 -12.01146 -11.76463 -11.41787 -11.32606 -11.19160 -10.85910 -10.72550 -10.61337 -10.46539 -10.34934 -10.18625 -9.87594 -9.67833 -9.29878 -8.61051 -8.19285 -6.09888 -4.10379 3.26040 3.35085 3.36129 3.71891 3.81273 3.94500 4.38923 4.58938 4.73128 4.76518 4.85817 4.94743 5.24981 5.28203 5.32995 5.35231 5.47082 5.48849 5.52328 5.55855 5.60000 5.66646 5.76985 5.78666 5.79877 5.91765 5.96979 6.01243 6.09230 6.16927 6.20066 6.26885 6.36765 6.42836 6.93185 7.12414 7.17709 7.22352 7.64894 8.41782 8.58453 8.93918 9.50052 11.03281 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.028541 B = 0.005058 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.824497 B = 5534.162902 C = 5751.666111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.078 0.922 4 C -0.108 4.108 5 C -0.091 4.091 6 H 0.078 0.922 7 C -0.146 4.146 8 C 0.055 3.945 9 N -0.542 5.542 10 C 0.061 3.939 11 C 0.020 3.980 12 H 0.105 0.895 13 C 0.254 3.746 14 N -0.472 5.472 15 C -0.005 4.005 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.877 3.123 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.264 1.264 24 C 0.063 3.937 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.025 0.975 38 H 0.032 0.968 39 H 0.264 0.736 40 H 0.072 0.928 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.005 -1.715 -11.068 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.096 0.904 4 C -0.146 4.146 5 C -0.109 4.109 6 H 0.096 0.904 7 C -0.204 4.204 8 C -0.073 4.073 9 N -0.265 5.265 10 C -0.068 4.068 11 C -0.002 4.002 12 H 0.123 0.877 13 C -0.063 4.063 14 N -0.149 5.149 15 C -0.044 4.044 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.704 3.296 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.065 4.065 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -17.349 0.403 -10.906 20.496 hybrid contribution -0.546 -1.784 0.882 2.064 sum -17.895 -1.381 -10.024 20.558 Atomic orbital electron populations 1.21785 0.95205 1.01605 1.01678 1.21167 0.94793 1.00517 0.94499 0.90403 1.21696 0.95283 1.00213 0.97401 1.21165 0.95262 1.00494 0.94029 0.90406 1.21786 1.01382 0.99955 0.97244 1.22238 1.00839 0.94643 0.89546 1.61880 1.07563 1.54675 1.02427 1.22234 0.94402 0.98366 0.91784 1.18997 0.94120 0.83670 1.03421 0.87738 1.28671 0.91478 0.94442 0.91683 1.80988 1.10142 1.13523 1.10228 1.19642 0.97675 0.95514 0.91605 1.21027 0.88886 1.36793 1.09787 0.90788 1.24985 0.94679 0.95641 0.97760 1.69902 1.05231 1.45208 1.33187 0.86824 0.80241 0.80408 0.82139 1.20070 1.21300 1.18858 1.22100 0.87461 0.98690 0.98268 0.92884 0.92641 0.92656 0.92136 0.92347 0.92738 0.92291 0.92855 0.94749 0.89935 0.90252 0.92991 0.95667 0.95014 0.92575 0.90948 0.94990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.20 37.16 0.34 -0.83 16 2 C -0.09 -0.91 2.88 -90.54 -0.26 -1.17 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.11 -1.03 4.57 -26.60 -0.12 -1.15 16 5 C -0.09 -0.97 2.88 -90.54 -0.26 -1.23 16 6 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 7 C -0.15 -1.35 9.20 37.16 0.34 -1.01 16 8 C 0.06 0.67 4.58 -3.84 -0.02 0.65 16 9 N -0.54 -7.22 4.36 -234.67 -1.02 -8.24 16 10 C 0.06 0.87 4.32 -3.82 -0.02 0.86 16 11 C 0.02 0.36 2.14 -93.40 -0.20 0.16 16 12 H 0.10 1.82 6.22 -51.93 -0.32 1.50 16 13 C 0.25 5.37 13.67 -20.76 -0.28 5.08 16 14 N -0.47 -10.91 18.54 42.15 0.78 -10.13 16 15 C -0.01 -0.12 3.49 -27.89 -0.10 -0.21 16 16 C -0.53 -14.28 9.15 -34.44 -0.32 -14.60 16 17 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 19 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 20 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 24 C 0.06 0.70 4.74 -3.83 -0.02 0.68 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 1.09 6.12 -51.93 -0.32 0.77 16 35 H 0.08 1.13 7.99 -51.93 -0.41 0.71 16 36 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 37 H 0.03 0.56 7.20 -51.93 -0.37 0.18 16 38 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.07 0.81 8.02 -51.93 -0.42 0.39 16 41 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -30.71 326.46 -7.53 -38.25 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -7.31 Total: -3.59 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -1.01 Total: -10.85 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 0.53 Total: -44.76 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.71 -7.53 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249514898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.179 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds