Wall clock time and date at job start Sun Mar 29 2020 22:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.53481 * 2 1 4 4 C 1.53119 * 109.50208 * 239.90137 * 2 1 3 5 5 C 1.53126 * 109.16048 * 182.40224 * 4 2 1 6 6 H 1.09006 * 109.50177 * 297.71578 * 5 4 2 7 7 C 1.52996 * 109.50254 * 177.59784 * 5 4 2 8 8 C 1.53034 * 109.27454 * 57.65518 * 5 4 2 9 9 N 1.46845 * 109.52676 * 300.81918 * 8 5 4 10 10 C 1.46898 * 111.00565 * 185.84030 * 9 8 5 11 11 C 1.53005 * 109.46979 * 65.79001 * 10 9 8 12 12 H 1.09005 * 109.46795 * 305.00617 * 11 10 9 13 13 C 1.47203 * 109.46763 * 65.00212 * 11 10 9 14 14 N 5.45530 * 145.88602 * 61.19619 * 2 1 3 15 15 C 1.52996 * 109.47411 * 185.00275 * 11 10 9 16 16 C 1.50698 * 109.47258 * 174.99915 * 15 11 10 17 17 H 1.07998 * 120.00120 * 0.02562 * 16 15 11 18 18 C 1.37882 * 119.99887 * 179.97438 * 16 15 11 19 19 N 1.31509 * 119.99843 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00149 * 0.02562 * 18 16 15 21 21 H 1.48493 * 109.47361 * 89.99347 * 20 18 16 22 22 H 1.48497 * 109.47113 * 210.00060 * 20 18 16 23 23 H 1.48501 * 109.46738 * 329.99441 * 20 18 16 24 24 C 1.46850 * 111.19654 * 61.74248 * 9 8 5 25 25 H 1.09004 * 109.47208 * 180.09906 * 1 2 3 26 26 H 1.09003 * 109.47038 * 300.09416 * 1 2 3 27 27 H 1.08996 * 109.47273 * 60.09885 * 1 2 3 28 28 H 1.08999 * 109.52185 * 62.50116 * 4 2 1 29 29 H 1.09000 * 109.57842 * 302.33810 * 4 2 1 30 30 H 1.08999 * 109.47332 * 59.99997 * 7 5 4 31 31 H 1.09001 * 109.46812 * 180.02562 * 7 5 4 32 32 H 1.08995 * 109.47049 * 299.99849 * 7 5 4 33 33 H 1.08995 * 109.46502 * 60.83953 * 8 5 4 34 34 H 1.09005 * 109.46032 * 180.80589 * 8 5 4 35 35 H 1.08999 * 109.47807 * 185.78920 * 10 9 8 36 36 H 1.09002 * 109.47253 * 305.79710 * 10 9 8 37 37 H 1.09004 * 109.47209 * 295.00633 * 15 11 10 38 38 H 1.09002 * 109.46812 * 54.99796 * 15 11 10 39 39 H 0.96998 * 120.00419 * 180.02562 * 19 18 16 40 40 H 1.09005 * 109.46186 * 178.24176 * 24 9 8 41 41 H 1.09004 * 109.45360 * 58.27331 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2487 5 6 3.5712 -0.7719 -1.2108 6 1 3.9678 0.2433 -1.2298 7 6 4.0882 -1.5460 -2.4250 8 6 4.0229 -1.4729 0.0723 9 7 3.5093 -0.7421 1.2378 10 6 4.0372 -1.3058 2.4874 11 6 5.5497 -1.0827 2.5486 12 1 6.0145 -1.4973 1.6540 13 6 5.8301 0.3604 2.6233 14 7 6.0466 1.4741 2.6810 15 6 6.1180 -1.7775 3.7875 16 6 7.6206 -1.6627 3.7830 17 1 8.1202 -1.1454 2.9772 18 6 8.3575 -2.2170 4.8081 19 7 9.6687 -2.1164 4.8044 20 14 7.4933 -3.1110 6.2021 21 1 7.3543 -4.5487 5.8574 22 1 8.2914 -2.9754 7.4471 23 1 6.1472 -2.5195 6.4102 24 6 2.0409 -0.7234 1.2480 25 1 -0.3634 -1.0277 0.0018 26 1 -0.3633 0.5153 0.8892 27 1 -0.3633 0.5123 -0.8908 28 1 1.7156 -0.1870 -2.1398 29 1 1.6453 -1.7392 -1.2701 30 1 3.7631 -1.0482 -3.3386 31 1 5.1773 -1.5803 -2.3972 32 1 3.6924 -2.5613 -2.4040 33 1 3.6375 -2.4924 0.0842 34 1 5.1121 -1.4961 0.1094 35 1 3.5629 -0.8143 3.3368 36 1 3.8260 -2.3746 2.5217 37 1 5.7200 -1.3034 4.6847 38 1 5.8340 -2.8298 3.7763 39 1 10.1872 -2.5067 5.5253 40 1 1.6905 -0.2022 2.1390 41 1 1.6649 -1.7465 1.2543 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249514898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:02 Heat of formation + Delta-G solvation = -19.508774 kcal Electronic energy + Delta-G solvation = -18629.455489 eV Core-core repulsion = 15928.306699 eV Total energy + Delta-G solvation = -2701.148789 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.49110 -38.19681 -35.97388 -35.03355 -34.33248 -33.23127 -29.20178 -27.54843 -27.39983 -25.75235 -23.30130 -22.71017 -21.64604 -20.54703 -18.90497 -18.23587 -16.92335 -16.22929 -16.06827 -15.77285 -15.41996 -15.28991 -14.96630 -14.53509 -14.25300 -13.94914 -13.63126 -13.55433 -13.40717 -13.27856 -13.11385 -12.82922 -12.74620 -12.61383 -12.50433 -12.22871 -11.99000 -11.68046 -11.64735 -11.63500 -11.41931 -11.35483 -11.03749 -10.91151 -10.72864 -9.16297 -8.24610 -6.30433 1.42285 1.45682 1.55931 2.04254 2.12360 2.41213 2.92663 3.11816 3.31817 3.80609 3.87728 3.96510 4.09194 4.24384 4.33026 4.49118 4.49529 4.60703 4.66741 4.70927 4.74194 4.80360 4.84791 4.90636 4.92436 4.93995 5.00559 5.11302 5.16822 5.22203 5.28736 5.36437 5.39990 5.44861 5.47686 5.61399 5.64060 6.16473 6.27059 6.28184 6.76768 6.90030 7.34049 8.92470 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.028541 B = 0.005058 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.824497 B = 5534.162902 C = 5751.666111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.057 0.943 4 C -0.103 4.103 5 C -0.090 4.090 6 H 0.055 0.945 7 C -0.142 4.142 8 C 0.054 3.946 9 N -0.560 5.560 10 C 0.070 3.930 11 C 0.025 3.975 12 H 0.110 0.890 13 C 0.264 3.736 14 N -0.516 5.516 15 C -0.002 4.002 16 C -0.532 4.532 17 H 0.027 0.973 18 C 0.004 3.996 19 N -0.954 5.954 20 Si 0.949 3.051 21 H -0.256 1.256 22 H -0.295 1.295 23 H -0.238 1.238 24 C 0.063 3.937 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.028 0.972 38 H 0.062 0.938 39 H 0.265 0.735 40 H 0.071 0.929 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.144 -3.499 -10.996 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.076 0.924 4 C -0.140 4.140 5 C -0.109 4.109 6 H 0.073 0.927 7 C -0.200 4.200 8 C -0.074 4.074 9 N -0.284 5.284 10 C -0.059 4.059 11 C 0.003 3.997 12 H 0.128 0.872 13 C -0.052 4.052 14 N -0.193 5.193 15 C -0.041 4.041 16 C -0.570 4.570 17 H 0.045 0.955 18 C -0.193 4.193 19 N -0.595 5.595 20 Si 0.772 3.228 21 H -0.181 1.181 22 H -0.221 1.221 23 H -0.161 1.161 24 C -0.064 4.064 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.521 -1.377 -10.861 23.259 hybrid contribution 0.504 -1.160 0.766 1.479 sum -20.017 -2.537 -10.094 22.561 Atomic orbital electron populations 1.21734 0.93511 1.02335 1.02125 1.21148 0.96131 0.99263 0.94329 0.92413 1.21661 0.93997 1.00868 0.97507 1.21140 0.96395 0.99285 0.94047 0.92651 1.21755 1.00854 1.00417 0.96952 1.22257 0.99887 0.95429 0.89784 1.61822 1.09130 1.55235 1.02228 1.22107 0.91058 1.00020 0.92667 1.19099 0.97226 0.81230 1.02156 0.87217 1.29379 0.90175 0.95146 0.90491 1.80979 1.11718 1.15065 1.11545 1.19583 0.93754 0.97618 0.93159 1.21382 0.92043 1.35354 1.08195 0.95453 1.26037 0.95264 0.96869 1.01088 1.70087 1.07463 1.47333 1.34588 0.85679 0.79785 0.79832 0.77535 1.18072 1.22124 1.16070 1.22154 0.85882 0.99581 0.98805 0.91942 0.92551 0.91952 0.91266 0.91247 0.91758 0.93141 0.91800 0.93398 0.91625 0.89791 0.90476 0.95395 0.92017 0.92631 0.91029 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.20 71.98 0.66 -1.22 16 2 C -0.09 -1.61 2.88 -10.74 -0.03 -1.64 16 3 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.10 -1.70 4.57 30.68 0.14 -1.56 16 5 C -0.09 -1.81 2.88 -10.74 -0.03 -1.84 16 6 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 7 C -0.14 -2.40 9.20 71.98 0.66 -1.74 16 8 C 0.05 1.23 4.58 86.33 0.40 1.62 16 9 N -0.56 -13.88 4.36 -896.36 -3.91 -17.78 16 10 C 0.07 1.83 4.32 86.31 0.37 2.20 16 11 C 0.02 0.87 2.14 -12.60 -0.03 0.84 16 12 H 0.11 3.77 6.22 -2.38 -0.01 3.75 16 13 C 0.26 11.22 13.67 89.44 1.22 12.45 16 14 N -0.52 -24.33 18.54 20.01 0.37 -23.96 16 15 C 0.00 -0.09 3.49 29.85 0.10 0.02 16 16 C -0.53 -29.12 9.15 25.60 0.23 -28.89 16 17 H 0.03 1.70 7.84 -2.91 -0.02 1.67 16 18 C 0.00 0.23 5.47 84.66 0.46 0.69 16 19 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 20 Si 0.95 41.66 27.47 68.60 1.88 43.55 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.24 -9.36 6.54 99.48 0.65 -8.70 16 24 C 0.06 1.25 4.74 86.32 0.41 1.66 16 25 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.69 6.12 -2.38 -0.01 1.67 16 35 H 0.08 2.13 7.99 -2.39 -0.02 2.11 16 36 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16 37 H 0.03 1.15 7.20 -2.39 -0.02 1.13 16 38 H 0.06 2.23 7.57 -2.39 -0.02 2.21 16 39 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.07 1.43 8.02 -2.38 -0.02 1.41 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -68.32 326.46 4.14 -64.18 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.92 Total: 10.59 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 4.58 Total: -17.42 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -3.24 Total: -100.90 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.88 Total: 43.55 kcal Total: -68.32 4.14 -64.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249514898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.672 kcal (2) G-P(sol) polarization free energy of solvation -68.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds