Wall clock time and date at job start Sun Mar 29 2020 22:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47528 * 2 1 4 4 C 1.53001 * 109.46893 * 240.00043 * 2 1 3 5 5 C 1.53002 * 109.46986 * 299.99813 * 4 2 1 6 6 C 1.52996 * 109.47441 * 300.00185 * 5 4 2 7 7 C 1.53001 * 109.47182 * 59.99935 * 6 5 4 8 8 C 1.52998 * 109.47059 * 299.99999 * 7 6 5 9 9 H 1.09003 * 109.47249 * 300.00013 * 8 7 6 10 10 N 1.46893 * 109.47241 * 179.97438 * 8 7 6 11 11 C 1.46910 * 110.99761 * 84.99964 * 10 8 7 12 12 C 1.53002 * 109.46906 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.47407 * 304.99784 * 12 11 10 14 14 C 1.47206 * 109.47021 * 65.00197 * 12 11 10 15 15 N 5.85795 * 70.63005 * 95.75086 * 2 1 3 16 16 C 1.52997 * 109.46817 * 185.00004 * 12 11 10 17 17 C 1.50698 * 109.46933 * 175.00167 * 16 12 11 18 18 H 1.08003 * 120.00121 * 0.02562 * 17 16 12 19 19 C 1.37882 * 119.99840 * 179.97438 * 17 16 12 20 20 N 1.31510 * 120.00071 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99922 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47095 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47107 * 120.00101 * 21 19 17 24 24 H 1.48503 * 109.47150 * 240.00344 * 21 19 17 25 25 H 1.09008 * 109.46984 * 299.99889 * 1 2 3 26 26 H 1.08997 * 109.47467 * 59.99909 * 1 2 3 27 27 H 1.08998 * 109.47528 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47101 * 180.02562 * 4 2 1 29 29 H 1.08998 * 109.47191 * 60.00303 * 4 2 1 30 30 H 1.09008 * 109.46885 * 180.02562 * 5 4 2 31 31 H 1.09003 * 109.47003 * 60.00182 * 5 4 2 32 32 H 1.09003 * 109.47019 * 299.99987 * 6 5 4 33 33 H 1.09004 * 109.46782 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47191 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.46586 * 60.00211 * 7 6 5 36 36 H 1.00899 * 110.99952 * 321.05189 * 10 8 7 37 37 H 1.08997 * 109.46998 * 60.00442 * 11 10 8 38 38 H 1.08997 * 109.46873 * 300.00074 * 11 10 8 39 39 H 1.08998 * 109.47192 * 294.99969 * 16 12 11 40 40 H 1.09000 * 109.47325 * 55.00085 * 16 12 11 41 41 H 0.97004 * 119.99924 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5299 -2.1638 -1.2492 6 6 2.0399 -2.8850 0.0000 7 6 1.5299 -2.1638 1.2493 8 6 2.0400 -0.7213 1.2493 9 1 3.1300 -0.7214 1.2492 10 7 1.5499 -0.0286 2.4483 11 6 2.4332 -0.2744 3.5962 12 6 1.8911 0.4610 4.8235 13 1 1.7678 1.5182 4.5885 14 6 0.5897 -0.1123 5.2038 15 7 -0.4129 -0.5538 5.4986 16 6 2.8748 0.3082 5.9853 17 6 2.4026 1.1326 7.1550 18 1 1.4917 1.7077 7.0777 19 6 3.1329 1.1519 8.3244 20 7 4.2418 0.4512 8.4188 21 14 2.5479 2.1744 9.7742 22 1 1.2832 2.8647 9.4148 23 1 2.3128 1.2881 10.9423 24 1 3.5823 3.1828 10.1182 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1299 -0.7217 -1.2491 29 1 1.6766 -0.2074 -2.1392 30 1 1.8936 -2.6778 -2.1390 31 1 0.4399 -2.1637 -1.2492 32 1 3.1299 -2.8851 0.0000 33 1 1.6768 -3.9128 -0.0003 34 1 1.8929 -2.6779 2.1392 35 1 0.4399 -2.1638 1.2492 36 1 0.6005 -0.2977 2.6586 37 1 3.4352 0.0887 3.3679 38 1 2.4725 -1.3441 3.8019 39 1 2.9306 -0.7401 6.2786 40 1 3.8613 0.6513 5.6736 41 1 4.7557 0.4651 9.2413 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249516580.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:10 Heat of formation + Delta-G solvation = -13.091054 kcal Electronic energy + Delta-G solvation = -18413.503066 eV Core-core repulsion = 15712.632570 eV Total energy + Delta-G solvation = -2700.870496 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.61387 -37.01771 -34.75528 -33.46939 -32.05781 -31.56732 -29.09089 -26.81731 -25.79269 -23.10577 -22.33381 -21.86539 -21.39775 -18.64538 -16.72754 -16.53226 -16.09893 -15.37444 -14.89918 -14.56038 -14.20867 -13.92064 -13.32542 -13.25436 -12.97678 -12.80867 -12.63271 -12.47756 -12.09735 -11.85590 -11.72969 -11.55591 -11.26393 -11.23205 -11.04147 -10.95064 -10.74141 -10.58031 -10.47691 -10.28738 -10.18082 -10.10572 -9.50771 -9.19729 -8.45461 -8.20749 -6.09223 -4.12149 3.28834 3.36987 3.41820 3.58920 3.64319 4.22825 4.42661 4.58059 4.65419 4.82252 4.87542 5.07180 5.12788 5.27452 5.28952 5.29616 5.36478 5.50173 5.55352 5.59218 5.69025 5.77732 5.86182 5.89554 5.91929 5.95918 5.99301 6.15592 6.22289 6.23720 6.29956 6.43243 6.46293 6.57471 7.19709 7.44326 7.50304 7.54560 7.86209 8.23953 8.41254 8.92751 9.53368 11.01735 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.040333 B = 0.004152 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.055946 B = 6741.336550 C = 6897.969985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.114 4.114 7 C -0.153 4.153 8 C 0.093 3.907 9 H 0.079 0.921 10 N -0.686 5.686 11 C 0.067 3.933 12 C 0.006 3.994 13 H 0.110 0.890 14 C 0.242 3.758 15 N -0.478 5.478 16 C 0.032 3.968 17 C -0.525 4.525 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.282 1.282 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.338 0.662 37 H 0.090 0.910 38 H 0.034 0.966 39 H 0.024 0.976 40 H 0.040 0.960 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 -3.333 -19.247 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.192 4.192 8 C -0.017 4.017 9 H 0.097 0.903 10 N -0.316 5.316 11 C -0.063 4.063 12 C -0.016 4.016 13 H 0.128 0.872 14 C -0.075 4.075 15 N -0.155 5.155 16 C -0.007 4.007 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.208 1.208 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.108 0.892 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.058 0.942 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.047 -3.426 -18.829 19.379 hybrid contribution -0.081 -0.278 1.141 1.177 sum -3.128 -3.704 -17.687 18.340 Atomic orbital electron populations 1.21905 0.95586 1.01491 1.01728 1.21060 0.95914 0.99596 0.93164 0.90484 1.21580 1.00544 0.95461 0.97683 1.21582 1.00987 0.95839 0.97491 1.21452 1.00734 0.98595 0.94436 1.22322 1.01335 0.97364 0.98208 1.21566 0.99432 0.90367 0.90346 0.90323 1.60703 1.05983 1.60931 1.03980 1.22109 0.97307 0.98199 0.88692 1.19340 0.86112 0.99721 0.96424 0.87178 1.29273 0.94190 0.92407 0.91586 1.80962 1.13335 1.10811 1.10363 1.19164 0.93174 0.98273 0.90051 1.21194 1.08928 1.28446 0.97784 0.92455 1.24955 0.94844 0.95522 0.98666 1.69948 1.15089 1.40789 1.27236 0.86541 0.78879 0.80160 0.82540 1.19667 1.21016 1.20811 0.92011 0.93275 0.92734 0.92037 0.92081 0.92435 0.91805 0.91988 0.92378 0.92047 0.91662 0.84387 0.89157 0.94804 0.95803 0.94217 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.23 37.16 0.31 -1.18 16 2 C -0.08 -0.78 2.91 -90.62 -0.26 -1.04 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.11 -0.97 5.45 -26.73 -0.15 -1.12 16 5 C -0.12 -1.01 5.65 -26.73 -0.15 -1.16 16 6 C -0.11 -1.04 5.92 -26.73 -0.16 -1.19 16 7 C -0.15 -1.64 4.90 -26.73 -0.13 -1.77 16 8 C 0.09 1.03 2.17 -67.71 -0.15 0.89 16 9 H 0.08 0.89 7.80 -51.93 -0.41 0.48 16 10 N -0.69 -9.05 5.76 -106.72 -0.61 -9.67 16 11 C 0.07 1.00 4.92 -3.82 -0.02 0.98 16 12 C 0.01 0.11 2.42 -93.40 -0.23 -0.12 16 13 H 0.11 1.97 8.14 -51.93 -0.42 1.54 16 14 C 0.24 4.93 12.97 -20.81 -0.27 4.66 16 15 N -0.48 -10.46 18.53 42.09 0.78 -9.68 16 16 C 0.03 0.74 4.42 -27.89 -0.12 0.62 16 17 C -0.53 -14.07 8.60 -34.44 -0.30 -14.37 16 18 H 0.06 1.54 7.59 -52.48 -0.40 1.14 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H 0.06 0.69 7.21 -51.92 -0.37 0.31 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.53 4.81 -51.93 -0.25 0.28 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.72 7.46 -51.93 -0.39 0.34 16 35 H 0.06 0.72 6.42 -51.93 -0.33 0.39 16 36 H 0.34 4.70 6.80 -39.29 -0.27 4.43 16 37 H 0.09 1.27 8.06 -51.93 -0.42 0.85 16 38 H 0.03 0.51 7.43 -51.93 -0.39 0.13 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -28.71 322.17 -7.90 -36.61 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.92 Total: -0.42 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -1.72 Total: -13.18 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.90 Total: -44.25 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.71 -7.90 -36.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249516580.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.519 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds